data_4XNL
#
_model_server_result.job_id            3u1Ql2mOb-NJI-15WiCYiA 
_model_server_result.datetime_utc      '2024-10-28 02:33:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4xnl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":515}' 
#
_entry.id    4XNL 
#
_exptl.entry_id    4XNL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4XNL 
_cell.length_a            47.38 
_cell.length_b            73.122 
_cell.length_c            184.84 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4XNL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             P 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 55 A ASP 55 1_555 P CA CA . A CA 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? 
metalc ? metalc2 A OD2 ASP 55 A ASP 55 1_555 P CA CA . A CA 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? 
metalc ? metalc3 A OD1 ASP 57 A ASP 57 1_555 P CA CA . A CA 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.935 ? 
metalc ? metalc4 A OD2 ASP 57 A ASP 57 1_555 P CA CA . A CA 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? 
metalc ? metalc5 A O ALA 61 A ALA 61 1_555 P CA CA . A CA 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.893 ? 
metalc ? metalc6 A O GLY 63 A GLY 63 1_555 P CA CA . A CA 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4XNL 
_atom_sites.fract_transf_matrix[1][1]    0.021106 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013676 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00541 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 LDA A 1 501 1492 LDA LDA . 
C 2 LDA A 1 502 1493 LDA LDA . 
D 2 LDA A 1 503 1495 LDA LDA . 
E 2 LDA A 1 504 1496 LDA LDA . 
F 2 LDA A 1 505 1504 LDA LDA . 
G 2 LDA A 1 506 1506 LDA LDA . 
H 3 78M A 1 507 1510 78M 78M . 
I 3 78M A 1 508 1512 78M 78M . 
J 4 78N A 1 509 1514 78N 78N . 
K 3 78M A 1 510 1515 78M 78M . 
L 5 PE5 A 1 511 1517 PE5 PE5 . 
M 3 78M A 1 512 1511 78M 78M . 
N 2 LDA A 1 513 1490 LDA LDA . 
O 2 LDA A 1 514 1491 LDA LDA . 
P 6 CA A 1 515 1 CA CA . 
Q 7 HOH A 1 601 132 HOH HOH . 
Q 7 HOH A 2 602 6 HOH HOH . 
Q 7 HOH A 3 603 90 HOH HOH . 
Q 7 HOH A 4 604 133 HOH HOH . 
Q 7 HOH A 5 605 11 HOH HOH . 
Q 7 HOH A 6 606 12 HOH HOH . 
Q 7 HOH A 7 607 14 HOH HOH . 
Q 7 HOH A 8 608 27 HOH HOH . 
Q 7 HOH A 9 609 39 HOH HOH . 
Q 7 HOH A 10 610 40 HOH HOH . 
Q 7 HOH A 11 611 52 HOH HOH . 
Q 7 HOH A 12 612 56 HOH HOH . 
Q 7 HOH A 13 613 63 HOH HOH . 
Q 7 HOH A 14 614 68 HOH HOH . 
Q 7 HOH A 15 615 78 HOH HOH . 
Q 7 HOH A 16 616 109 HOH HOH . 
Q 7 HOH A 17 617 111 HOH HOH . 
Q 7 HOH A 18 618 112 HOH HOH . 
Q 7 HOH A 19 619 113 HOH HOH . 
Q 7 HOH A 20 620 123 HOH HOH . 
Q 7 HOH A 21 621 126 HOH HOH . 
Q 7 HOH A 22 622 127 HOH HOH . 
Q 7 HOH A 23 623 129 HOH HOH . 
Q 7 HOH A 24 624 130 HOH HOH . 
Q 7 HOH A 25 625 131 HOH HOH . 
Q 7 HOH A 26 626 139 HOH HOH . 
Q 7 HOH A 27 627 140 HOH HOH . 
Q 7 HOH A 28 628 142 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         P 
_atom_site.label_entity_id       6 
_atom_site.Cartn_x               0.778 
_atom_site.Cartn_y               0.366 
_atom_site.Cartn_z               -43.622 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        54.9 
_atom_site.pdbx_formal_charge    2 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           515 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              67 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           1 
#