data_4XNU # _model_server_result.job_id jzTYzPgOZQ3Xx6JnxY5tDw _model_server_result.datetime_utc '2024-11-24 15:51:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xnu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":605}' # _entry.id 4XNU # _exptl.entry_id 4XNU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 271.354 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description nisoxetine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XNU _cell.length_a 96.901 _cell.length_b 133.667 _cell.length_c 161.682 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XNU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 124 A CYS 148 1_555 A SG CYS 133 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf2 B SG CYS 23 L CYS 23 1_555 B SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 B SG CYS 135 L CYS 135 1_555 B SG CYS 195 L CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 C SG CYS 41 H CYS 22 1_555 C SG CYS 115 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 C SG CYS 165 H CYS 146 1_555 C SG CYS 220 H CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc1 A O GLY 18 A GLY 42 1_555 E NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc2 A O ALA 20 A ALA 44 1_555 D NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc3 A O VAL 21 A VAL 45 1_555 E NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc4 A OD1 ASN 25 A ASN 49 1_555 D NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.769 ? metalc ? metalc5 A O SER 253 A SER 320 1_555 D NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc6 A OG SER 253 A SER 320 1_555 D NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc7 A OD1 ASN 285 A ASN 352 1_555 D NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.096 ? metalc ? metalc8 A O LEU 350 A LEU 417 1_555 E NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc9 A OD1 ASP 353 A ASP 420 1_555 E NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc10 A OG SER 354 A SER 421 1_555 E NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc11 D NA NA . A NA 601 1_555 I O HOH . A HOH 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? # _chem_comp.formula 'C17 H21 N O2' _chem_comp.formula_weight 271.354 _chem_comp.id 41U _chem_comp.mon_nstd_flag . _chem_comp.name nisoxetine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (3S)-3-(2-methoxyphenoxy)-N-methyl-3-phenylpropan-1-amine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3 C2 41U doub 1 n y C3 C4 41U sing 2 n y C2 C1 41U sing 3 n y C4 C5 41U doub 4 n y C12 C13 41U doub 5 n y C12 C11 41U sing 6 n y C1 C 41U doub 7 n y C13 C8 41U sing 8 n y C11 C10 41U doub 9 n y C5 C 41U sing 10 n y C5 O1 41U sing 11 n n C O 41U sing 12 n n C8 C7 41U sing 13 n n C8 C9 41U doub 14 n y C14 C7 41U sing 15 n n C14 C15 41U sing 16 n n C10 C9 41U sing 17 n y O1 C6 41U sing 18 n n O C7 41U sing 19 n n C15 N 41U sing 20 n n N C16 41U sing 21 n n C16 H1 41U sing 22 n n C16 H2 41U sing 23 n n C16 H3 41U sing 24 n n C15 H4 41U sing 25 n n C15 H5 41U sing 26 n n C14 H6 41U sing 27 n n C14 H7 41U sing 28 n n C13 H8 41U sing 29 n n C12 H9 41U sing 30 n n C11 H10 41U sing 31 n n C10 H11 41U sing 32 n n C3 H12 41U sing 33 n n C2 H13 41U sing 34 n n C1 H14 41U sing 35 n n N H15 41U sing 36 n n C4 H17 41U sing 37 n n C9 H18 41U sing 38 n n C7 H19 41U sing 39 n n C6 H20 41U sing 40 n n C6 H21 41U sing 41 n n C6 H22 41U sing 42 n n # _atom_sites.entry_id 4XNU _atom_sites.fract_transf_matrix[1][1] 0.01032 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007481 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006185 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NA A 1 601 1 NA NA . E 4 NA A 1 602 2 NA NA . F 5 CL A 1 603 3 CL CL . G 6 CLR A 1 604 1 CLR CLR . H 7 41U A 1 605 1 41U DUM . I 8 HOH A 1 701 1 HOH HOH . I 8 HOH A 2 702 2 HOH HOH . I 8 HOH A 3 703 3 HOH HOH . I 8 HOH A 4 704 4 HOH HOH . I 8 HOH A 5 705 5 HOH HOH . I 8 HOH A 6 706 6 HOH HOH . I 8 HOH A 7 707 7 HOH HOH . I 8 HOH A 8 708 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C16 41U . . . H 7 -5.253 -2.344 29.442 1 89.54 ? C16 41U 605 A 1 HETATM 2 O O1 41U . . . H 7 -11.433 -2.929 26.424 1 109.2 ? O1 41U 605 A 1 HETATM 3 C C15 41U . . . H 7 -5.603 -1.258 27.208 1 96.75 ? C15 41U 605 A 1 HETATM 4 C C14 41U . . . H 7 -6.613 -1.704 26.164 1 96.58 ? C14 41U 605 A 1 HETATM 5 C C13 41U . . . H 7 -8.453 -0.059 24.764 1 90.85 ? C13 41U 605 A 1 HETATM 6 C C12 41U . . . H 7 -9.053 1.07 24.219 1 94.25 ? C12 41U 605 A 1 HETATM 7 C C11 41U . . . H 7 -9.867 1.877 25.003 1 99.17 ? C11 41U 605 A 1 HETATM 8 C C10 41U . . . H 7 -10.081 1.555 26.337 1 100.29 ? C10 41U 605 A 1 HETATM 9 O O 41U . . . H 7 -8.76 -2.795 26.523 1 96.56 ? O 41U 605 A 1 HETATM 10 C C3 41U . . . H 7 -10.615 -4.037 23.032 1 104.09 ? C3 41U 605 A 1 HETATM 11 C C2 41U . . . H 7 -9.226 -3.97 23.073 1 91.49 ? C2 41U 605 A 1 HETATM 12 C C1 41U . . . H 7 -8.59 -3.555 24.237 1 88.04 ? C1 41U 605 A 1 HETATM 13 N N 41U . . . H 7 -5.139 -2.379 27.999 1 88.85 ? N 41U 605 A 1 HETATM 14 C C 41U . . . H 7 -9.343 -3.2 25.352 1 94.52 ? C 41U 605 A 1 HETATM 15 C C4 41U . . . H 7 -11.364 -3.69 24.151 1 113.4 ? C4 41U 605 A 1 HETATM 16 C C9 41U . . . H 7 -9.48 0.428 26.882 1 93.87 ? C9 41U 605 A 1 HETATM 17 C C8 41U . . . H 7 -8.672 -0.385 26.097 1 88.8 ? C8 41U 605 A 1 HETATM 18 C C7 41U . . . H 7 -8.031 -1.576 26.707 1 94.6 ? C7 41U 605 A 1 HETATM 19 C C6 41U . . . H 7 -12.491 -3.765 26.88 1 107.69 ? C6 41U 605 A 1 HETATM 20 C C5 41U . . . H 7 -10.719 -3.276 25.31 1 111.07 ? C5 41U 605 A 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #