data_4XNV # _model_server_result.job_id ObtIJgwr7tw-ZXyrnBfr6w _model_server_result.datetime_utc '2024-11-23 10:07:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xnv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1101}' # _entry.id 4XNV # _exptl.entry_id 4XNV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 445.434 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[2-(2-tert-butylphenoxy)pyridin-3-yl]-3-[4-(trifluoromethoxy)phenyl]urea _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4XNV _cell.length_a 66.27 _cell.length_b 66.27 _cell.length_c 239.07 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XNV _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 41 A CYS 42 1_555 A SG CYS 344 A CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 A SG CYS 123 A CYS 124 1_555 A SG CYS 201 A CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 A SG CYS 252 A CYS 1006 1_555 P ZN ZN . A ZN 1115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.879 ? metalc ? metalc2 A SG CYS 255 A CYS 1009 1_555 P ZN ZN . A ZN 1115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc3 A SG CYS 285 A CYS 1039 1_555 P ZN ZN . A ZN 1115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.603 ? metalc ? metalc4 A SG CYS 288 A CYS 1042 1_555 P ZN ZN . A ZN 1115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? # _chem_comp.formula 'C23 H22 F3 N3 O3' _chem_comp.formula_weight 445.434 _chem_comp.id BUR _chem_comp.mon_nstd_flag . _chem_comp.name 1-[2-(2-tert-butylphenoxy)pyridin-3-yl]-3-[4-(trifluoromethoxy)phenyl]urea _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAK CAJ BUR doub 107 n y CAK NAS BUR sing 108 n y CAJ CAL BUR sing 109 n y NAS CBC BUR doub 110 n y CAL CBA BUR doub 111 n y CAH CAM BUR doub 112 n y CAH CAI BUR sing 113 n y CAM CBB BUR sing 114 n y CBC CBA BUR sing 115 n y CBC OAV BUR sing 116 n n CBA NAU BUR sing 117 n n CAI CAN BUR doub 118 n y CBB OAV BUR sing 119 n n CBB CBD BUR doub 120 n y NAU CAX BUR sing 121 n n OAD CAX BUR doub 122 n n CAN CBD BUR sing 123 n y CBD CBE BUR sing 124 n n CAX NAT BUR sing 125 n n CAB CBE BUR sing 126 n n CBE CAA BUR sing 127 n n CBE CAC BUR sing 128 n n NAT CAY BUR sing 129 n n CAP CAY BUR doub 130 n y CAP CAR BUR sing 131 n y CAY CAO BUR sing 132 n y CAR CAZ BUR doub 133 n y CAO CAQ BUR doub 134 n y FAG CBF BUR sing 135 n n CAZ CAQ BUR sing 136 n y CAZ OAW BUR sing 137 n n OAW CBF BUR sing 138 n n CBF FAE BUR sing 139 n n CBF FAF BUR sing 140 n n CAQ H1 BUR sing 141 n n CAO H2 BUR sing 142 n n CAR H3 BUR sing 143 n n CAP H4 BUR sing 144 n n NAT H5 BUR sing 145 n n NAU H6 BUR sing 146 n n CAL H7 BUR sing 147 n n CAJ H8 BUR sing 148 n n CAK H9 BUR sing 149 n n CAM H10 BUR sing 150 n n CAH H11 BUR sing 151 n n CAI H12 BUR sing 152 n n CAN H13 BUR sing 153 n n CAC H14 BUR sing 154 n n CAC H15 BUR sing 155 n n CAC H16 BUR sing 156 n n CAA H17 BUR sing 157 n n CAA H18 BUR sing 158 n n CAA H19 BUR sing 159 n n CAB H20 BUR sing 160 n n CAB H21 BUR sing 161 n n CAB H22 BUR sing 162 n n # _atom_sites.entry_id 4XNV _atom_sites.fract_transf_matrix[1][1] 0.01509 _atom_sites.fract_transf_matrix[1][2] 0.008712 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017424 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004183 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BUR A 1 1101 1 BUR BUR . C 3 CLR A 1 1102 1 CLR CLR . D 4 Y01 A 1 1103 2 Y01 Y01 . E 4 Y01 A 1 1104 3 Y01 Y01 . F 4 Y01 A 1 1105 4 Y01 Y01 . G 5 OLC A 1 1106 5 OLC OLC . H 5 OLC A 1 1107 6 OLC OLC . I 5 OLC A 1 1108 7 OLC OLC . J 5 OLC A 1 1109 8 OLC OLC . K 5 OLC A 1 1110 10 OLC OLC . L 5 OLC A 1 1111 11 OLC OLC . M 5 OLC A 1 1112 12 OLC OLC . N 5 OLC A 1 1113 13 OLC OLC . O 6 1PE A 1 1114 200 1PE 1PE . P 7 ZN A 1 1115 1 ZN ZN . Q 8 HOH A 1 1201 108 HOH HOH . Q 8 HOH A 2 1202 102 HOH HOH . Q 8 HOH A 3 1203 105 HOH HOH . Q 8 HOH A 4 1204 116 HOH HOH . Q 8 HOH A 5 1205 115 HOH HOH . Q 8 HOH A 6 1206 7 HOH HOH . Q 8 HOH A 7 1207 119 HOH HOH . Q 8 HOH A 8 1208 125 HOH HOH . Q 8 HOH A 9 1209 123 HOH HOH . Q 8 HOH A 10 1210 4 HOH HOH . Q 8 HOH A 11 1211 118 HOH HOH . Q 8 HOH A 12 1212 124 HOH HOH . Q 8 HOH A 13 1213 120 HOH HOH . Q 8 HOH A 14 1214 3 HOH HOH . Q 8 HOH A 15 1215 109 HOH HOH . Q 8 HOH A 16 1216 117 HOH HOH . Q 8 HOH A 17 1217 10 HOH HOH . Q 8 HOH A 18 1218 112 HOH HOH . Q 8 HOH A 19 1219 114 HOH HOH . Q 8 HOH A 20 1220 106 HOH HOH . Q 8 HOH A 21 1221 103 HOH HOH . Q 8 HOH A 22 1222 9 HOH HOH . Q 8 HOH A 23 1223 121 HOH HOH . Q 8 HOH A 24 1224 104 HOH HOH . Q 8 HOH A 25 1225 2 HOH HOH . Q 8 HOH A 26 1226 8 HOH HOH . Q 8 HOH A 27 1227 1 HOH HOH . Q 8 HOH A 28 1228 5 HOH HOH . Q 8 HOH A 29 1229 107 HOH HOH . Q 8 HOH A 30 1230 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 F FAE BUR . . . B 2 -22.516 34.054 10.798 1 69.95 ? FAE BUR 1101 A 1 HETATM 2 C CBF BUR . . . B 2 -22.766 35.322 10.367 1 68.21 ? CBF BUR 1101 A 1 HETATM 3 F FAF BUR . . . B 2 -23.565 35.893 11.261 1 70.42 ? FAF BUR 1101 A 1 HETATM 4 F FAG BUR . . . B 2 -23.428 35.265 9.109 1 67.18 ? FAG BUR 1101 A 1 HETATM 5 O OAW BUR . . . B 2 -21.536 36.1 10.285 1 63.03 ? OAW BUR 1101 A 1 HETATM 6 C CAZ BUR . . . B 2 -20.594 35.669 9.384 1 57.58 ? CAZ BUR 1101 A 1 HETATM 7 C CAQ BUR . . . B 2 -19.564 34.807 9.791 1 53.89 ? CAQ BUR 1101 A 1 HETATM 8 C CAO BUR . . . B 2 -18.6 34.38 8.866 1 52.34 ? CAO BUR 1101 A 1 HETATM 9 C CAR BUR . . . B 2 -20.623 36.13 8.058 1 55.65 ? CAR BUR 1101 A 1 HETATM 10 C CAP BUR . . . B 2 -19.66 35.691 7.141 1 53.91 ? CAP BUR 1101 A 1 HETATM 11 C CAY BUR . . . B 2 -18.627 34.812 7.528 1 51.43 ? CAY BUR 1101 A 1 HETATM 12 N NAT BUR . . . B 2 -17.633 34.37 6.711 1 48.52 ? NAT BUR 1101 A 1 HETATM 13 C CAX BUR . . . B 2 -17.344 34.868 5.473 1 49.06 ? CAX BUR 1101 A 1 HETATM 14 O OAD BUR . . . B 2 -18.037 35.735 4.931 1 50.66 ? OAD BUR 1101 A 1 HETATM 15 N NAU BUR . . . B 2 -16.306 34.268 4.819 1 47.93 ? NAU BUR 1101 A 1 HETATM 16 C CBA BUR . . . B 2 -15.808 34.701 3.625 1 46.23 ? CBA BUR 1101 A 1 HETATM 17 C CAL BUR . . . B 2 -16.55 35.332 2.606 1 45.46 ? CAL BUR 1101 A 1 HETATM 18 C CAJ BUR . . . B 2 -15.928 35.768 1.43 1 44.62 ? CAJ BUR 1101 A 1 HETATM 19 C CAK BUR . . . B 2 -14.555 35.568 1.267 1 45.24 ? CAK BUR 1101 A 1 HETATM 20 N NAS BUR . . . B 2 -13.823 34.942 2.302 1 45.23 ? NAS BUR 1101 A 1 HETATM 21 C CBC BUR . . . B 2 -14.431 34.503 3.432 1 45.17 ? CBC BUR 1101 A 1 HETATM 22 O OAV BUR . . . B 2 -13.763 33.867 4.46 1 47.46 ? OAV BUR 1101 A 1 HETATM 23 C CBB BUR . . . B 2 -12.541 33.255 4.26 1 47.34 ? CBB BUR 1101 A 1 HETATM 24 C CAM BUR . . . B 2 -12.339 32.374 3.182 1 47.05 ? CAM BUR 1101 A 1 HETATM 25 C CAH BUR . . . B 2 -11.101 31.766 2.977 1 45.81 ? CAH BUR 1101 A 1 HETATM 26 C CAI BUR . . . B 2 -10.071 31.974 3.89 1 46.01 ? CAI BUR 1101 A 1 HETATM 27 C CAN BUR . . . B 2 -10.282 32.814 4.986 1 46.98 ? CAN BUR 1101 A 1 HETATM 28 C CBD BUR . . . B 2 -11.508 33.468 5.224 1 47.68 ? CBD BUR 1101 A 1 HETATM 29 C CBE BUR . . . B 2 -11.617 34.333 6.389 1 46.67 ? CBE BUR 1101 A 1 HETATM 30 C CAC BUR . . . B 2 -12.719 33.863 7.356 1 45.71 ? CAC BUR 1101 A 1 HETATM 31 C CAA BUR . . . B 2 -10.304 34.38 7.202 1 45.1 ? CAA BUR 1101 A 1 HETATM 32 C CAB BUR . . . B 2 -11.918 35.783 5.979 1 45.74 ? CAB BUR 1101 A 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #