data_4XNV
#
_model_server_result.job_id            KrveJrS-pZzT-e0lSecQ4A 
_model_server_result.datetime_utc      '2024-11-21 14:19:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4xnv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1103}' 
#
_entry.id    4XNV 
#
_exptl.entry_id    4XNV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              486.726 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CHOLESTEROL HEMISUCCINATE' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4XNV 
_cell.length_a            66.27 
_cell.length_b            66.27 
_cell.length_c            239.07 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4XNV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 41 A CYS 42 1_555 A SG CYS 344 A CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf2 A SG CYS 123 A CYS 124 1_555 A SG CYS 201 A CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
metalc ? metalc1 A SG CYS 252 A CYS 1006 1_555 P ZN ZN . A ZN 1115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.879 ? 
metalc ? metalc2 A SG CYS 255 A CYS 1009 1_555 P ZN ZN . A ZN 1115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? 
metalc ? metalc3 A SG CYS 285 A CYS 1039 1_555 P ZN ZN . A ZN 1115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.603 ? 
metalc ? metalc4 A SG CYS 288 A CYS 1042 1_555 P ZN ZN . A ZN 1115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? 
#
_chem_comp.formula           'C31 H50 O4' 
_chem_comp.formula_weight    486.726 
_chem_comp.id                Y01 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CHOLESTEROL HEMISUCCINATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAA CBA Y01 sing 610 n n 
CBA CAB Y01 sing 611 n n 
CBA CAN Y01 sing 612 n n 
CAN CAJ Y01 sing 613 n n 
CAJ CAO Y01 sing 614 n n 
CAO CBB Y01 sing 615 n n 
CBB CAC Y01 sing 616 n n 
CBB CBE Y01 sing 617 n n 
CBE CAP Y01 sing 618 n n 
CBE CBI Y01 sing 619 n n 
CAP CAQ Y01 sing 620 n n 
CAQ CBG Y01 sing 621 n n 
CBG CBI Y01 sing 622 n n 
CBG CBD Y01 sing 623 n n 
CBI CAE Y01 sing 624 n n 
CBI CAU Y01 sing 625 n n 
CAU CAS Y01 sing 626 n n 
CAS CBF Y01 sing 627 n n 
CBF CBD Y01 sing 628 n n 
CBF CBH Y01 sing 629 n n 
CBD CAK Y01 sing 630 n n 
CAK CAI Y01 sing 631 n n 
CAI CAZ Y01 doub 632 n n 
CAZ CAV Y01 sing 633 n n 
CAZ CBH Y01 sing 634 n n 
CAV CBC Y01 sing 635 n n 
CBH CAD Y01 sing 636 n n 
CBH CAT Y01 sing 637 n n 
CAT CAR Y01 sing 638 n n 
CAR CBC Y01 sing 639 n n 
CBC OAW Y01 sing 640 n n 
OAW CAY Y01 sing 641 n n 
CAY OAG Y01 doub 642 n n 
CAY CAM Y01 sing 643 n n 
CAM CAL Y01 sing 644 n n 
CAL CAX Y01 sing 645 n n 
CAX OAH Y01 sing 646 n n 
CAX OAF Y01 doub 647 n n 
CAA HAA1 Y01 sing 648 n n 
CAA HAA2 Y01 sing 649 n n 
CAA HAA3 Y01 sing 650 n n 
CBA HBA Y01 sing 651 n n 
CAB HAB1 Y01 sing 652 n n 
CAB HAB2 Y01 sing 653 n n 
CAB HAB3 Y01 sing 654 n n 
CAN HAN1 Y01 sing 655 n n 
CAN HAN2 Y01 sing 656 n n 
CAJ HAJ1 Y01 sing 657 n n 
CAJ HAJ2 Y01 sing 658 n n 
CAO HAO1 Y01 sing 659 n n 
CAO HAO2 Y01 sing 660 n n 
CBB HBB Y01 sing 661 n n 
CAC HAC1 Y01 sing 662 n n 
CAC HAC2 Y01 sing 663 n n 
CAC HAC3 Y01 sing 664 n n 
CBE HBE Y01 sing 665 n n 
CAP HAP1 Y01 sing 666 n n 
CAP HAP2 Y01 sing 667 n n 
CAQ HAQ1 Y01 sing 668 n n 
CAQ HAQ2 Y01 sing 669 n n 
CBG HBG Y01 sing 670 n n 
CBD HBD Y01 sing 671 n n 
CAE HAE1 Y01 sing 672 n n 
CAE HAE2 Y01 sing 673 n n 
CAE HAE3 Y01 sing 674 n n 
CAU HAU1 Y01 sing 675 n n 
CAU HAU2 Y01 sing 676 n n 
CAS HAS1 Y01 sing 677 n n 
CAS HAS2 Y01 sing 678 n n 
CBF HBF Y01 sing 679 n n 
CAK HAK1 Y01 sing 680 n n 
CAK HAK2 Y01 sing 681 n n 
CAI HAI Y01 sing 682 n n 
CAV HAV1 Y01 sing 683 n n 
CAV HAV2 Y01 sing 684 n n 
CBC HBC Y01 sing 685 n n 
CAD HAD1 Y01 sing 686 n n 
CAD HAD2 Y01 sing 687 n n 
CAD HAD3 Y01 sing 688 n n 
CAT HAT1 Y01 sing 689 n n 
CAT HAT2 Y01 sing 690 n n 
CAR HAR1 Y01 sing 691 n n 
CAR HAR2 Y01 sing 692 n n 
CAM HAM1 Y01 sing 693 n n 
CAM HAM2 Y01 sing 694 n n 
CAL HAL1 Y01 sing 695 n n 
CAL HAL2 Y01 sing 696 n n 
OAH HAH Y01 sing 697 n n 
#
_atom_sites.entry_id                     4XNV 
_atom_sites.fract_transf_matrix[1][1]    0.01509 
_atom_sites.fract_transf_matrix[1][2]    0.008712 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017424 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004183 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 BUR A 1 1101 1 BUR BUR . 
C 3 CLR A 1 1102 1 CLR CLR . 
D 4 Y01 A 1 1103 2 Y01 Y01 . 
E 4 Y01 A 1 1104 3 Y01 Y01 . 
F 4 Y01 A 1 1105 4 Y01 Y01 . 
G 5 OLC A 1 1106 5 OLC OLC . 
H 5 OLC A 1 1107 6 OLC OLC . 
I 5 OLC A 1 1108 7 OLC OLC . 
J 5 OLC A 1 1109 8 OLC OLC . 
K 5 OLC A 1 1110 10 OLC OLC . 
L 5 OLC A 1 1111 11 OLC OLC . 
M 5 OLC A 1 1112 12 OLC OLC . 
N 5 OLC A 1 1113 13 OLC OLC . 
O 6 1PE A 1 1114 200 1PE 1PE . 
P 7 ZN A 1 1115 1 ZN ZN . 
Q 8 HOH A 1 1201 108 HOH HOH . 
Q 8 HOH A 2 1202 102 HOH HOH . 
Q 8 HOH A 3 1203 105 HOH HOH . 
Q 8 HOH A 4 1204 116 HOH HOH . 
Q 8 HOH A 5 1205 115 HOH HOH . 
Q 8 HOH A 6 1206 7 HOH HOH . 
Q 8 HOH A 7 1207 119 HOH HOH . 
Q 8 HOH A 8 1208 125 HOH HOH . 
Q 8 HOH A 9 1209 123 HOH HOH . 
Q 8 HOH A 10 1210 4 HOH HOH . 
Q 8 HOH A 11 1211 118 HOH HOH . 
Q 8 HOH A 12 1212 124 HOH HOH . 
Q 8 HOH A 13 1213 120 HOH HOH . 
Q 8 HOH A 14 1214 3 HOH HOH . 
Q 8 HOH A 15 1215 109 HOH HOH . 
Q 8 HOH A 16 1216 117 HOH HOH . 
Q 8 HOH A 17 1217 10 HOH HOH . 
Q 8 HOH A 18 1218 112 HOH HOH . 
Q 8 HOH A 19 1219 114 HOH HOH . 
Q 8 HOH A 20 1220 106 HOH HOH . 
Q 8 HOH A 21 1221 103 HOH HOH . 
Q 8 HOH A 22 1222 9 HOH HOH . 
Q 8 HOH A 23 1223 121 HOH HOH . 
Q 8 HOH A 24 1224 104 HOH HOH . 
Q 8 HOH A 25 1225 2 HOH HOH . 
Q 8 HOH A 26 1226 8 HOH HOH . 
Q 8 HOH A 27 1227 1 HOH HOH . 
Q 8 HOH A 28 1228 5 HOH HOH . 
Q 8 HOH A 29 1229 107 HOH HOH . 
Q 8 HOH A 30 1230 6 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA Y01 . . . D 4 -15.091 -4.185 9.771 1 41.91 ? CAA Y01 1103 A 1 
HETATM 2 C CBA Y01 . . . D 4 -15.171 -3.377 11.067 1 43.35 ? CBA Y01 1103 A 1 
HETATM 3 C CAB Y01 . . . D 4 -15.891 -4.216 12.12 1 42.92 ? CAB Y01 1103 A 1 
HETATM 4 C CAN Y01 . . . D 4 -15.951 -2.069 10.834 1 45.72 ? CAN Y01 1103 A 1 
HETATM 5 C CAJ Y01 . . . D 4 -14.995 -0.934 10.445 1 44.72 ? CAJ Y01 1103 A 1 
HETATM 6 C CAO Y01 . . . D 4 -15.72 0.43 10.472 1 43.98 ? CAO Y01 1103 A 1 
HETATM 7 C CBB Y01 . . . D 4 -15.192 1.425 9.397 1 43 ? CBB Y01 1103 A 1 
HETATM 8 C CAC Y01 . . . D 4 -13.644 1.456 9.43 1 43.14 ? CAC Y01 1103 A 1 
HETATM 9 C CBE Y01 . . . D 4 -15.818 1.147 7.978 1 41.3 ? CBE Y01 1103 A 1 
HETATM 10 C CAP Y01 . . . D 4 -17.383 1.313 8.011 1 42.7 ? CAP Y01 1103 A 1 
HETATM 11 C CAQ Y01 . . . D 4 -17.81 1.867 6.641 1 42.43 ? CAQ Y01 1103 A 1 
HETATM 12 C CBG Y01 . . . D 4 -16.554 1.647 5.799 1 40.4 ? CBG Y01 1103 A 1 
HETATM 13 C CBI Y01 . . . D 4 -15.36 2.013 6.735 1 39.23 ? CBI Y01 1103 A 1 
HETATM 14 C CAE Y01 . . . D 4 -15.213 3.546 7.06 1 38.04 ? CAE Y01 1103 A 1 
HETATM 15 C CAU Y01 . . . D 4 -14.074 1.471 6.029 1 36.67 ? CAU Y01 1103 A 1 
HETATM 16 C CAS Y01 . . . D 4 -13.859 2.088 4.599 1 36.89 ? CAS Y01 1103 A 1 
HETATM 17 C CBF Y01 . . . D 4 -15.146 1.999 3.662 1 38.32 ? CBF Y01 1103 A 1 
HETATM 18 C CBD Y01 . . . D 4 -16.501 2.361 4.403 1 39.69 ? CBD Y01 1103 A 1 
HETATM 19 C CAK Y01 . . . D 4 -17.696 1.978 3.494 1 39.65 ? CAK Y01 1103 A 1 
HETATM 20 C CAI Y01 . . . D 4 -17.519 2.432 2.173 1 39.15 ? CAI Y01 1103 A 1 
HETATM 21 C CAZ Y01 . . . D 4 -16.289 2.772 1.577 1 39.05 ? CAZ Y01 1103 A 1 
HETATM 22 C CAV Y01 . . . D 4 -16.374 3.17 0.224 1 39.61 ? CAV Y01 1103 A 1 
HETATM 23 C CBH Y01 . . . D 4 -15.021 2.791 2.297 1 37.28 ? CBH Y01 1103 A 1 
HETATM 24 C CAD Y01 . . . D 4 -14.589 4.271 2.573 1 35.44 ? CAD Y01 1103 A 1 
HETATM 25 C CAT Y01 . . . D 4 -13.934 2.078 1.434 1 35.31 ? CAT Y01 1103 A 1 
HETATM 26 C CAR Y01 . . . D 4 -13.958 2.52 -0.057 1 36.68 ? CAR Y01 1103 A 1 
HETATM 27 C CBC Y01 . . . D 4 -15.368 2.423 -0.657 1 40.82 ? CBC Y01 1103 A 1 
HETATM 28 O OAW Y01 . . . D 4 -15.372 3.061 -1.957 1 46.91 ? OAW Y01 1103 A 1 
HETATM 29 C CAY Y01 . . . D 4 -15.327 2.274 -3.071 1 49.87 ? CAY Y01 1103 A 1 
HETATM 30 O OAG Y01 . . . D 4 -15.622 1.077 -3.108 1 51.65 ? OAG Y01 1103 A 1 
HETATM 31 C CAM Y01 . . . D 4 -14.888 3.035 -4.33 1 52.23 ? CAM Y01 1103 A 1 
HETATM 32 C CAL Y01 . . . D 4 -15.77 2.758 -5.559 1 56.16 ? CAL Y01 1103 A 1 
HETATM 33 C CAX Y01 . . . D 4 -17.27 2.77 -5.231 1 59.58 ? CAX Y01 1103 A 1 
HETATM 34 O OAH Y01 . . . D 4 -17.769 3.835 -4.805 1 59.44 ? OAH Y01 1103 A 1 
HETATM 35 O OAF Y01 . . . D 4 -17.888 1.701 -5.433 1 62.19 ? OAF Y01 1103 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          15 
_model_server_stats.element_count           35 
#