data_4XNV # _model_server_result.job_id 30LpO2K2HBknk2ekqo6jfA _model_server_result.datetime_utc '2024-10-28 02:25:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xnv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1104}' # _entry.id 4XNV # _exptl.entry_id 4XNV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 486.726 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4XNV _cell.length_a 66.27 _cell.length_b 66.27 _cell.length_c 239.07 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XNV _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 41 A CYS 42 1_555 A SG CYS 344 A CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 A SG CYS 123 A CYS 124 1_555 A SG CYS 201 A CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 A SG CYS 252 A CYS 1006 1_555 P ZN ZN . A ZN 1115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.879 ? metalc ? metalc2 A SG CYS 255 A CYS 1009 1_555 P ZN ZN . A ZN 1115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc3 A SG CYS 285 A CYS 1039 1_555 P ZN ZN . A ZN 1115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.603 ? metalc ? metalc4 A SG CYS 288 A CYS 1042 1_555 P ZN ZN . A ZN 1115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4XNV _atom_sites.fract_transf_matrix[1][1] 0.01509 _atom_sites.fract_transf_matrix[1][2] 0.008712 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017424 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004183 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BUR A 1 1101 1 BUR BUR . C 3 CLR A 1 1102 1 CLR CLR . D 4 Y01 A 1 1103 2 Y01 Y01 . E 4 Y01 A 1 1104 3 Y01 Y01 . F 4 Y01 A 1 1105 4 Y01 Y01 . G 5 OLC A 1 1106 5 OLC OLC . H 5 OLC A 1 1107 6 OLC OLC . I 5 OLC A 1 1108 7 OLC OLC . J 5 OLC A 1 1109 8 OLC OLC . K 5 OLC A 1 1110 10 OLC OLC . L 5 OLC A 1 1111 11 OLC OLC . M 5 OLC A 1 1112 12 OLC OLC . N 5 OLC A 1 1113 13 OLC OLC . O 6 1PE A 1 1114 200 1PE 1PE . P 7 ZN A 1 1115 1 ZN ZN . Q 8 HOH A 1 1201 108 HOH HOH . Q 8 HOH A 2 1202 102 HOH HOH . Q 8 HOH A 3 1203 105 HOH HOH . Q 8 HOH A 4 1204 116 HOH HOH . Q 8 HOH A 5 1205 115 HOH HOH . Q 8 HOH A 6 1206 7 HOH HOH . Q 8 HOH A 7 1207 119 HOH HOH . Q 8 HOH A 8 1208 125 HOH HOH . Q 8 HOH A 9 1209 123 HOH HOH . Q 8 HOH A 10 1210 4 HOH HOH . Q 8 HOH A 11 1211 118 HOH HOH . Q 8 HOH A 12 1212 124 HOH HOH . Q 8 HOH A 13 1213 120 HOH HOH . Q 8 HOH A 14 1214 3 HOH HOH . Q 8 HOH A 15 1215 109 HOH HOH . Q 8 HOH A 16 1216 117 HOH HOH . Q 8 HOH A 17 1217 10 HOH HOH . Q 8 HOH A 18 1218 112 HOH HOH . Q 8 HOH A 19 1219 114 HOH HOH . Q 8 HOH A 20 1220 106 HOH HOH . Q 8 HOH A 21 1221 103 HOH HOH . Q 8 HOH A 22 1222 9 HOH HOH . Q 8 HOH A 23 1223 121 HOH HOH . Q 8 HOH A 24 1224 104 HOH HOH . Q 8 HOH A 25 1225 2 HOH HOH . Q 8 HOH A 26 1226 8 HOH HOH . Q 8 HOH A 27 1227 1 HOH HOH . Q 8 HOH A 28 1228 5 HOH HOH . Q 8 HOH A 29 1229 107 HOH HOH . Q 8 HOH A 30 1230 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . E 4 8.515 9.117 14.329 1 41.78 ? CAA Y01 1104 A 1 HETATM 2 C CBA Y01 . . . E 4 8.421 10.553 13.783 1 43.38 ? CBA Y01 1104 A 1 HETATM 3 C CAB Y01 . . . E 4 9.731 11.274 14.102 1 42.6 ? CAB Y01 1104 A 1 HETATM 4 C CAN Y01 . . . E 4 7.251 11.339 14.412 1 45.28 ? CAN Y01 1104 A 1 HETATM 5 C CAJ Y01 . . . E 4 5.892 10.859 13.881 1 45.57 ? CAJ Y01 1104 A 1 HETATM 6 C CAO Y01 . . . E 4 4.905 12.03 13.711 1 44.36 ? CAO Y01 1104 A 1 HETATM 7 C CBB Y01 . . . E 4 3.581 11.842 14.499 1 45.29 ? CBB Y01 1104 A 1 HETATM 8 C CAC Y01 . . . E 4 3.16 10.361 14.524 1 44.48 ? CAC Y01 1104 A 1 HETATM 9 C CBE Y01 . . . E 4 3.612 12.474 15.936 1 47.21 ? CBE Y01 1104 A 1 HETATM 10 C CAP Y01 . . . E 4 4.398 13.834 15.978 1 48.9 ? CAP Y01 1104 A 1 HETATM 11 C CAQ Y01 . . . E 4 3.666 14.756 16.959 1 48.88 ? CAQ Y01 1104 A 1 HETATM 12 C CBG Y01 . . . E 4 2.76 13.767 17.684 1 49.35 ? CBG Y01 1104 A 1 HETATM 13 C CBI Y01 . . . E 4 2.223 12.817 16.585 1 47.63 ? CBI Y01 1104 A 1 HETATM 14 C CAE Y01 . . . E 4 1.223 13.477 15.575 1 46.46 ? CAE Y01 1104 A 1 HETATM 15 C CAU Y01 . . . E 4 1.559 11.593 17.319 1 46.38 ? CAU Y01 1104 A 1 HETATM 16 C CAS Y01 . . . E 4 0.425 12.022 18.293 1 46.74 ? CAS Y01 1104 A 1 HETATM 17 C CBF Y01 . . . E 4 0.889 13.124 19.332 1 48.02 ? CBF Y01 1104 A 1 HETATM 18 C CBD Y01 . . . E 4 1.658 14.339 18.651 1 48.69 ? CBD Y01 1104 A 1 HETATM 19 C CAK Y01 . . . E 4 2.275 15.231 19.768 1 47.57 ? CAK Y01 1104 A 1 HETATM 20 C CAI Y01 . . . E 4 1.428 15.416 20.876 1 47.83 ? CAI Y01 1104 A 1 HETATM 21 C CAZ Y01 . . . E 4 0.268 14.682 21.185 1 48.7 ? CAZ Y01 1104 A 1 HETATM 22 C CAV Y01 . . . E 4 -0.398 15.085 22.376 1 49.42 ? CAV Y01 1104 A 1 HETATM 23 C CBH Y01 . . . E 4 -0.258 13.642 20.313 1 48.04 ? CBH Y01 1104 A 1 HETATM 24 C CAD Y01 . . . E 4 -1.448 14.203 19.486 1 46.08 ? CAD Y01 1104 A 1 HETATM 25 C CAT Y01 . . . E 4 -0.752 12.43 21.185 1 49.19 ? CAT Y01 1104 A 1 HETATM 26 C CAR Y01 . . . E 4 -1.599 12.856 22.428 1 49.21 ? CAR Y01 1104 A 1 HETATM 27 C CBC Y01 . . . E 4 -0.837 13.893 23.258 1 49.71 ? CBC Y01 1104 A 1 HETATM 28 O OAW Y01 . . . E 4 -1.689 14.38 24.319 1 51.91 ? OAW Y01 1104 A 1 HETATM 29 C CAY Y01 . . . E 4 -1.276 14.132 25.607 1 55.47 ? CAY Y01 1104 A 1 HETATM 30 O OAG Y01 . . . E 4 -0.132 13.795 25.935 1 58.18 ? OAG Y01 1104 A 1 HETATM 31 C CAM Y01 . . . E 4 -2.384 14.314 26.66 1 54.61 ? CAM Y01 1104 A 1 HETATM 32 C CAL Y01 . . . E 4 -1.804 14.64 28.044 1 55 ? CAL Y01 1104 A 1 HETATM 33 C CAX Y01 . . . E 4 -2.929 14.842 29.068 1 55.41 ? CAX Y01 1104 A 1 HETATM 34 O OAH Y01 . . . E 4 -3.563 15.919 29.02 1 55.16 ? OAH Y01 1104 A 1 HETATM 35 O OAF Y01 . . . E 4 -3.117 13.922 29.892 1 55.73 ? OAF Y01 1104 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 35 #