data_4XNV
#
_model_server_result.job_id            tgMlFhqKGuYO6EK29zRGAg 
_model_server_result.datetime_utc      '2024-11-21 14:32:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4xnv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":1111}' 
#
_entry.id    4XNV 
#
_exptl.entry_id    4XNV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4XNV 
_cell.length_a            66.27 
_cell.length_b            66.27 
_cell.length_c            239.07 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4XNV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 H N N 
? 5 I N N 
? 5 J N N 
? 5 K N N 
? 5 L N N 
? 5 M N N 
? 5 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 41 A CYS 42 1_555 A SG CYS 344 A CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf2 A SG CYS 123 A CYS 124 1_555 A SG CYS 201 A CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
metalc ? metalc1 A SG CYS 252 A CYS 1006 1_555 P ZN ZN . A ZN 1115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.879 ? 
metalc ? metalc2 A SG CYS 255 A CYS 1009 1_555 P ZN ZN . A ZN 1115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? 
metalc ? metalc3 A SG CYS 285 A CYS 1039 1_555 P ZN ZN . A ZN 1115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.603 ? 
metalc ? metalc4 A SG CYS 288 A CYS 1042 1_555 P ZN ZN . A ZN 1115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                OLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Oleoyl-R-glycerol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 C17 OLC sing 407 n n 
C10 C9 OLC doub 408 n n 
C10 C11 OLC sing 409 n n 
C9 C8 OLC sing 410 n n 
C17 C16 OLC sing 411 z n 
C11 C12 OLC sing 412 n n 
C8 C7 OLC sing 413 n n 
C24 C22 OLC sing 414 n n 
C24 O25 OLC sing 415 n n 
C16 C15 OLC sing 416 n n 
C12 C13 OLC sing 417 n n 
C7 C6 OLC sing 418 n n 
C15 C14 OLC sing 419 n n 
C13 C14 OLC sing 420 n n 
C6 C5 OLC sing 421 n n 
C5 C4 OLC sing 422 n n 
C4 C3 OLC sing 423 n n 
C3 C2 OLC sing 424 n n 
C2 C1 OLC sing 425 n n 
C21 C22 OLC sing 426 n n 
C21 O20 OLC sing 427 n n 
C1 O19 OLC doub 428 n n 
C1 O20 OLC sing 429 n n 
C22 O23 OLC sing 430 n n 
C18 H18 OLC sing 431 n n 
C18 H18A OLC sing 432 n n 
C18 H18B OLC sing 433 n n 
C10 H10 OLC sing 434 n n 
C9 H9 OLC sing 435 n n 
C17 H17 OLC sing 436 n n 
C17 H17A OLC sing 437 n n 
C11 H11 OLC sing 438 n n 
C11 H11A OLC sing 439 n n 
C8 H8 OLC sing 440 n n 
C8 H8A OLC sing 441 n n 
C24 H24 OLC sing 442 n n 
C24 H24A OLC sing 443 n n 
C16 H16 OLC sing 444 n n 
C16 H16A OLC sing 445 n n 
C12 H12 OLC sing 446 n n 
C12 H12A OLC sing 447 n n 
C7 H7 OLC sing 448 n n 
C7 H7A OLC sing 449 n n 
C15 H15 OLC sing 450 n n 
C15 H15A OLC sing 451 n n 
C13 H13 OLC sing 452 n n 
C13 H13A OLC sing 453 n n 
C6 H6 OLC sing 454 n n 
C6 H6A OLC sing 455 n n 
C14 H14 OLC sing 456 n n 
C14 H14A OLC sing 457 n n 
C5 H5 OLC sing 458 n n 
C5 H5A OLC sing 459 n n 
C4 H4 OLC sing 460 n n 
C4 H4A OLC sing 461 n n 
C3 H3 OLC sing 462 n n 
C3 H3A OLC sing 463 n n 
C2 H2 OLC sing 464 n n 
C2 H2A OLC sing 465 n n 
C21 H21 OLC sing 466 n n 
C21 H21A OLC sing 467 n n 
C22 H22 OLC sing 468 n n 
O25 HO25 OLC sing 469 n n 
O23 HO23 OLC sing 470 n n 
#
_atom_sites.entry_id                     4XNV 
_atom_sites.fract_transf_matrix[1][1]    0.01509 
_atom_sites.fract_transf_matrix[1][2]    0.008712 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017424 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004183 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 BUR A 1 1101 1 BUR BUR . 
C 3 CLR A 1 1102 1 CLR CLR . 
D 4 Y01 A 1 1103 2 Y01 Y01 . 
E 4 Y01 A 1 1104 3 Y01 Y01 . 
F 4 Y01 A 1 1105 4 Y01 Y01 . 
G 5 OLC A 1 1106 5 OLC OLC . 
H 5 OLC A 1 1107 6 OLC OLC . 
I 5 OLC A 1 1108 7 OLC OLC . 
J 5 OLC A 1 1109 8 OLC OLC . 
K 5 OLC A 1 1110 10 OLC OLC . 
L 5 OLC A 1 1111 11 OLC OLC . 
M 5 OLC A 1 1112 12 OLC OLC . 
N 5 OLC A 1 1113 13 OLC OLC . 
O 6 1PE A 1 1114 200 1PE 1PE . 
P 7 ZN A 1 1115 1 ZN ZN . 
Q 8 HOH A 1 1201 108 HOH HOH . 
Q 8 HOH A 2 1202 102 HOH HOH . 
Q 8 HOH A 3 1203 105 HOH HOH . 
Q 8 HOH A 4 1204 116 HOH HOH . 
Q 8 HOH A 5 1205 115 HOH HOH . 
Q 8 HOH A 6 1206 7 HOH HOH . 
Q 8 HOH A 7 1207 119 HOH HOH . 
Q 8 HOH A 8 1208 125 HOH HOH . 
Q 8 HOH A 9 1209 123 HOH HOH . 
Q 8 HOH A 10 1210 4 HOH HOH . 
Q 8 HOH A 11 1211 118 HOH HOH . 
Q 8 HOH A 12 1212 124 HOH HOH . 
Q 8 HOH A 13 1213 120 HOH HOH . 
Q 8 HOH A 14 1214 3 HOH HOH . 
Q 8 HOH A 15 1215 109 HOH HOH . 
Q 8 HOH A 16 1216 117 HOH HOH . 
Q 8 HOH A 17 1217 10 HOH HOH . 
Q 8 HOH A 18 1218 112 HOH HOH . 
Q 8 HOH A 19 1219 114 HOH HOH . 
Q 8 HOH A 20 1220 106 HOH HOH . 
Q 8 HOH A 21 1221 103 HOH HOH . 
Q 8 HOH A 22 1222 9 HOH HOH . 
Q 8 HOH A 23 1223 121 HOH HOH . 
Q 8 HOH A 24 1224 104 HOH HOH . 
Q 8 HOH A 25 1225 2 HOH HOH . 
Q 8 HOH A 26 1226 8 HOH HOH . 
Q 8 HOH A 27 1227 1 HOH HOH . 
Q 8 HOH A 28 1228 5 HOH HOH . 
Q 8 HOH A 29 1229 107 HOH HOH . 
Q 8 HOH A 30 1230 6 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C18 OLC . . . L 5 -30.127 24.737 14.866 1 79.07 ? C18 OLC 1111 A 1 
HETATM 2 C C10 OLC . . . L 5 -30.391 22.957 5.703 1 76.58 ? C10 OLC 1111 A 1 
HETATM 3 C C9 OLC . . . L 5 -30.318 22.924 4.159 1 74.66 ? C9 OLC 1111 A 1 
HETATM 4 C C17 OLC . . . L 5 -30.891 25.403 13.719 1 78.94 ? C17 OLC 1111 A 1 
HETATM 5 C C11 OLC . . . L 5 -30.31 24.312 6.431 1 77.14 ? C11 OLC 1111 A 1 
HETATM 6 C C8 OLC . . . L 5 -30.167 24.247 3.399 1 72.55 ? C8 OLC 1111 A 1 
HETATM 7 C C24 OLC . . . L 5 -26.223 27.034 -8.191 1 89.44 ? C24 OLC 1111 A 1 
HETATM 8 C C16 OLC . . . L 5 -31.12 24.383 12.599 1 79 ? C16 OLC 1111 A 1 
HETATM 9 C C12 OLC . . . L 5 -29.779 24.086 7.85 1 77.61 ? C12 OLC 1111 A 1 
HETATM 10 C C7 OLC . . . L 5 -29.451 23.978 2.076 1 71.81 ? C7 OLC 1111 A 1 
HETATM 11 C C15 OLC . . . L 5 -30.398 24.853 11.334 1 78.92 ? C15 OLC 1111 A 1 
HETATM 12 C C13 OLC . . . L 5 -30.743 24.695 8.866 1 77.97 ? C13 OLC 1111 A 1 
HETATM 13 C C6 OLC . . . L 5 -30.233 24.621 0.933 1 71.32 ? C6 OLC 1111 A 1 
HETATM 14 C C14 OLC . . . L 5 -30.692 23.9 10.173 1 78.61 ? C14 OLC 1111 A 1 
HETATM 15 C C5 OLC . . . L 5 -29.97 23.854 -0.361 1 71.13 ? C5 OLC 1111 A 1 
HETATM 16 C C4 OLC . . . L 5 -29.17 24.74 -1.315 1 72.01 ? C4 OLC 1111 A 1 
HETATM 17 C C3 OLC . . . L 5 -28.628 23.885 -2.456 1 74.65 ? C3 OLC 1111 A 1 
HETATM 18 C C2 OLC . . . L 5 -27.501 24.645 -3.161 1 77.46 ? C2 OLC 1111 A 1 
HETATM 19 C C21 OLC . . . L 5 -26.148 25.826 -6.004 1 85.53 ? C21 OLC 1111 A 1 
HETATM 20 C C1 OLC . . . L 5 -27.706 24.674 -4.689 1 81.19 ? C1 OLC 1111 A 1 
HETATM 21 C C22 OLC . . . L 5 -26.038 25.671 -7.521 1 87.25 ? C22 OLC 1111 A 1 
HETATM 22 O O19 OLC . . . L 5 -28.831 24.763 -5.187 1 82.52 ? O19 OLC 1111 A 1 
HETATM 23 O O25 OLC . . . L 5 -26.366 26.848 -9.603 1 91.29 ? O25 OLC 1111 A 1 
HETATM 24 O O23 OLC . . . L 5 -24.754 25.142 -7.858 1 86.62 ? O23 OLC 1111 A 1 
HETATM 25 O O20 OLC . . . L 5 -26.557 24.574 -5.423 1 83.55 ? O20 OLC 1111 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           25 
#