data_4XNV # _model_server_result.job_id tcacGW-twx2eYeFztizYCQ _model_server_result.datetime_utc '2024-10-28 02:22:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xnv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":1111}' # _entry.id 4XNV # _exptl.entry_id 4XNV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4XNV _cell.length_a 66.27 _cell.length_b 66.27 _cell.length_c 239.07 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XNV _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 H N N ? 5 I N N ? 5 J N N ? 5 K N N ? 5 L N N ? 5 M N N ? 5 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 41 A CYS 42 1_555 A SG CYS 344 A CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 A SG CYS 123 A CYS 124 1_555 A SG CYS 201 A CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 A SG CYS 252 A CYS 1006 1_555 P ZN ZN . A ZN 1115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.879 ? metalc ? metalc2 A SG CYS 255 A CYS 1009 1_555 P ZN ZN . A ZN 1115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc3 A SG CYS 285 A CYS 1039 1_555 P ZN ZN . A ZN 1115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.603 ? metalc ? metalc4 A SG CYS 288 A CYS 1042 1_555 P ZN ZN . A ZN 1115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # _atom_sites.entry_id 4XNV _atom_sites.fract_transf_matrix[1][1] 0.01509 _atom_sites.fract_transf_matrix[1][2] 0.008712 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017424 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004183 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BUR A 1 1101 1 BUR BUR . C 3 CLR A 1 1102 1 CLR CLR . D 4 Y01 A 1 1103 2 Y01 Y01 . E 4 Y01 A 1 1104 3 Y01 Y01 . F 4 Y01 A 1 1105 4 Y01 Y01 . G 5 OLC A 1 1106 5 OLC OLC . H 5 OLC A 1 1107 6 OLC OLC . I 5 OLC A 1 1108 7 OLC OLC . J 5 OLC A 1 1109 8 OLC OLC . K 5 OLC A 1 1110 10 OLC OLC . L 5 OLC A 1 1111 11 OLC OLC . M 5 OLC A 1 1112 12 OLC OLC . N 5 OLC A 1 1113 13 OLC OLC . O 6 1PE A 1 1114 200 1PE 1PE . P 7 ZN A 1 1115 1 ZN ZN . Q 8 HOH A 1 1201 108 HOH HOH . Q 8 HOH A 2 1202 102 HOH HOH . Q 8 HOH A 3 1203 105 HOH HOH . Q 8 HOH A 4 1204 116 HOH HOH . Q 8 HOH A 5 1205 115 HOH HOH . Q 8 HOH A 6 1206 7 HOH HOH . Q 8 HOH A 7 1207 119 HOH HOH . Q 8 HOH A 8 1208 125 HOH HOH . Q 8 HOH A 9 1209 123 HOH HOH . Q 8 HOH A 10 1210 4 HOH HOH . Q 8 HOH A 11 1211 118 HOH HOH . Q 8 HOH A 12 1212 124 HOH HOH . Q 8 HOH A 13 1213 120 HOH HOH . Q 8 HOH A 14 1214 3 HOH HOH . Q 8 HOH A 15 1215 109 HOH HOH . Q 8 HOH A 16 1216 117 HOH HOH . Q 8 HOH A 17 1217 10 HOH HOH . Q 8 HOH A 18 1218 112 HOH HOH . Q 8 HOH A 19 1219 114 HOH HOH . Q 8 HOH A 20 1220 106 HOH HOH . Q 8 HOH A 21 1221 103 HOH HOH . Q 8 HOH A 22 1222 9 HOH HOH . Q 8 HOH A 23 1223 121 HOH HOH . Q 8 HOH A 24 1224 104 HOH HOH . Q 8 HOH A 25 1225 2 HOH HOH . Q 8 HOH A 26 1226 8 HOH HOH . Q 8 HOH A 27 1227 1 HOH HOH . Q 8 HOH A 28 1228 5 HOH HOH . Q 8 HOH A 29 1229 107 HOH HOH . Q 8 HOH A 30 1230 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . L 5 -30.127 24.737 14.866 1 79.07 ? C18 OLC 1111 A 1 HETATM 2 C C10 OLC . . . L 5 -30.391 22.957 5.703 1 76.58 ? C10 OLC 1111 A 1 HETATM 3 C C9 OLC . . . L 5 -30.318 22.924 4.159 1 74.66 ? C9 OLC 1111 A 1 HETATM 4 C C17 OLC . . . L 5 -30.891 25.403 13.719 1 78.94 ? C17 OLC 1111 A 1 HETATM 5 C C11 OLC . . . L 5 -30.31 24.312 6.431 1 77.14 ? C11 OLC 1111 A 1 HETATM 6 C C8 OLC . . . L 5 -30.167 24.247 3.399 1 72.55 ? C8 OLC 1111 A 1 HETATM 7 C C24 OLC . . . L 5 -26.223 27.034 -8.191 1 89.44 ? C24 OLC 1111 A 1 HETATM 8 C C16 OLC . . . L 5 -31.12 24.383 12.599 1 79 ? C16 OLC 1111 A 1 HETATM 9 C C12 OLC . . . L 5 -29.779 24.086 7.85 1 77.61 ? C12 OLC 1111 A 1 HETATM 10 C C7 OLC . . . L 5 -29.451 23.978 2.076 1 71.81 ? C7 OLC 1111 A 1 HETATM 11 C C15 OLC . . . L 5 -30.398 24.853 11.334 1 78.92 ? C15 OLC 1111 A 1 HETATM 12 C C13 OLC . . . L 5 -30.743 24.695 8.866 1 77.97 ? C13 OLC 1111 A 1 HETATM 13 C C6 OLC . . . L 5 -30.233 24.621 0.933 1 71.32 ? C6 OLC 1111 A 1 HETATM 14 C C14 OLC . . . L 5 -30.692 23.9 10.173 1 78.61 ? C14 OLC 1111 A 1 HETATM 15 C C5 OLC . . . L 5 -29.97 23.854 -0.361 1 71.13 ? C5 OLC 1111 A 1 HETATM 16 C C4 OLC . . . L 5 -29.17 24.74 -1.315 1 72.01 ? C4 OLC 1111 A 1 HETATM 17 C C3 OLC . . . L 5 -28.628 23.885 -2.456 1 74.65 ? C3 OLC 1111 A 1 HETATM 18 C C2 OLC . . . L 5 -27.501 24.645 -3.161 1 77.46 ? C2 OLC 1111 A 1 HETATM 19 C C21 OLC . . . L 5 -26.148 25.826 -6.004 1 85.53 ? C21 OLC 1111 A 1 HETATM 20 C C1 OLC . . . L 5 -27.706 24.674 -4.689 1 81.19 ? C1 OLC 1111 A 1 HETATM 21 C C22 OLC . . . L 5 -26.038 25.671 -7.521 1 87.25 ? C22 OLC 1111 A 1 HETATM 22 O O19 OLC . . . L 5 -28.831 24.763 -5.187 1 82.52 ? O19 OLC 1111 A 1 HETATM 23 O O25 OLC . . . L 5 -26.366 26.848 -9.603 1 91.29 ? O25 OLC 1111 A 1 HETATM 24 O O23 OLC . . . L 5 -24.754 25.142 -7.858 1 86.62 ? O23 OLC 1111 A 1 HETATM 25 O O20 OLC . . . L 5 -26.557 24.574 -5.423 1 83.55 ? O20 OLC 1111 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 25 #