data_4XNW
#
_model_server_result.job_id            eGIemHzLVTkgMESXmMt9qw 
_model_server_result.datetime_utc      '2024-11-02 09:21:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4xnw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1101}' 
#
_entry.id    4XNW 
#
_exptl.entry_id    4XNW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              561.163 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(1R,2S,4S,5S)-4-[2-iodo-6-(methylamino)-9H-purin-9-yl]-2-(phosphonooxy)bicyclo[3.1.0]hex-1-yl]methyl dihydrogen phosphate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         101.82 
_cell.angle_beta          95.7 
_cell.angle_gamma         100.85 
_cell.entry_id            4XNW 
_cell.length_a            40.67 
_cell.length_b            64.97 
_cell.length_c            77.57 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4XNW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 41 A CYS 42 1_555 A SG CYS 344 A CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
disulf ? disulf2 A SG CYS 123 A CYS 124 1_555 A SG CYS 201 A CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
disulf ? disulf3 B SG CYS 41 C CYS 42 1_555 B SG CYS 344 C CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
disulf ? disulf4 B SG CYS 123 C CYS 124 1_555 B SG CYS 201 C CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
metalc ? metalc1 A SG CYS 252 A CYS 1006 1_555 D ZN ZN . A ZN 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
metalc ? metalc2 A SG CYS 255 A CYS 1009 1_555 D ZN ZN . A ZN 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? 
metalc ? metalc3 A SG CYS 285 A CYS 1039 1_555 D ZN ZN . A ZN 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? 
metalc ? metalc4 A SG CYS 288 A CYS 1042 1_555 D ZN ZN . A ZN 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? 
metalc ? metalc5 B SG CYS 252 C CYS 1006 1_555 F ZN ZN . C ZN 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? 
metalc ? metalc6 B SG CYS 285 C CYS 1039 1_555 F ZN ZN . C ZN 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc7 B SG CYS 288 C CYS 1042 1_555 F ZN ZN . C ZN 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? 
#
_chem_comp.formula           'C13 H18 I N5 O8 P2' 
_chem_comp.formula_weight    561.163 
_chem_comp.id                2ID 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(1R,2S,4S,5S)-4-[2-iodo-6-(methylamino)-9H-purin-9-yl]-2-(phosphonooxy)bicyclo[3.1.0]hex-1-yl]methyl dihydrogen phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OAB PBB 2ID doub 1 n n 
OAD PBB 2ID sing 2 n n 
OAE PBB 2ID sing 3 n n 
PBB OAQ 2ID sing 4 n n 
OAQ CAJ 2ID sing 5 n n 
CAJ CBA 2ID sing 6 n n 
N7 C8 2ID doub 7 n y 
N7 C5 2ID sing 8 n y 
C8 N9 2ID sing 9 n y 
N6 CAA 2ID sing 10 n n 
N6 C6 2ID sing 11 n n 
CBA CAW 2ID sing 12 n n 
CBA CAY 2ID sing 13 n n 
CBA CAL 2ID sing 14 n n 
OAC PBC 2ID doub 15 n n 
C5 C6 2ID doub 16 n y 
C5 C4 2ID sing 17 n y 
OAG PBC 2ID sing 18 n n 
CAW OAR 2ID sing 19 n n 
CAW CAK 2ID sing 20 n n 
C6 N1 2ID sing 21 n y 
CAY CAL 2ID sing 22 n n 
CAY CAX 2ID sing 23 n n 
N9 C4 2ID sing 24 n y 
N9 CAX 2ID sing 25 n n 
PBC OAR 2ID sing 26 n n 
PBC OAF 2ID sing 27 n n 
C4 N3 2ID doub 28 n y 
CAX CAK 2ID sing 29 n n 
N1 C2 2ID doub 30 n y 
N3 C2 2ID sing 31 n y 
C2 I2 2ID sing 32 n n 
OAF H1 2ID sing 33 n n 
OAG H2 2ID sing 34 n n 
CAW H3 2ID sing 35 n n 
CAK H4 2ID sing 36 n n 
CAK H5 2ID sing 37 n n 
CAJ H6 2ID sing 38 n n 
CAJ H7 2ID sing 39 n n 
OAD H8 2ID sing 40 n n 
OAE H9 2ID sing 41 n n 
CAL H10 2ID sing 42 n n 
CAL H11 2ID sing 43 n n 
CAY H12 2ID sing 44 n n 
CAX H13 2ID sing 45 n n 
C8 H14 2ID sing 46 n n 
N6 H15 2ID sing 47 n n 
CAA H16 2ID sing 48 n n 
CAA H17 2ID sing 49 n n 
CAA H18 2ID sing 50 n n 
#
_atom_sites.entry_id                     4XNW 
_atom_sites.fract_transf_matrix[1][1]    0.024588 
_atom_sites.fract_transf_matrix[1][2]    0.004713 
_atom_sites.fract_transf_matrix[1][3]    0.003628 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015672 
_atom_sites.fract_transf_matrix[2][3]    0.003682 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013308 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 2ID A 1 1101 400 2ID 2ID . 
D 3 ZN A 1 1102 2 ZN ZN . 
E 2 2ID C 1 1101 400 2ID 2ID . 
F 3 ZN C 1 1102 1 ZN ZN . 
G 4 HOH A 1 1201 9 HOH HOH . 
G 4 HOH A 2 1202 10 HOH HOH . 
G 4 HOH A 3 1203 6 HOH HOH . 
G 4 HOH A 4 1204 1 HOH HOH . 
G 4 HOH A 5 1205 3 HOH HOH . 
G 4 HOH A 6 1206 7 HOH HOH . 
H 4 HOH C 1 1201 5 HOH HOH . 
H 4 HOH C 2 1202 8 HOH HOH . 
H 4 HOH C 3 1203 11 HOH HOH . 
H 4 HOH C 4 1204 2 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OAF 2ID . . . C 2 24.56 20.554 12.04 1 50.14 ? OAF 2ID 1101 A 1 
HETATM 2 P PBC 2ID . . . C 2 24.196 21.03 10.556 1 53.68 ? PBC 2ID 1101 A 1 
HETATM 3 O OAG 2ID . . . C 2 23.076 19.99 10.056 1 51.64 ? OAG 2ID 1101 A 1 
HETATM 4 O OAC 2ID . . . C 2 25.441 20.99 9.735 1 54.03 ? OAC 2ID 1101 A 1 
HETATM 5 O OAR 2ID . . . C 2 23.501 22.51 10.652 1 50.48 ? OAR 2ID 1101 A 1 
HETATM 6 C CAW 2ID . . . C 2 22.171 22.773 10.156 1 48.46 ? CAW 2ID 1101 A 1 
HETATM 7 C CAK 2ID . . . C 2 21.206 22.586 11.3 1 46.2 ? CAK 2ID 1101 A 1 
HETATM 8 C CBA 2ID . . . C 2 22.016 24.266 9.678 1 47.94 ? CBA 2ID 1101 A 1 
HETATM 9 C CAJ 2ID . . . C 2 21.874 24.566 8.207 1 48.51 ? CAJ 2ID 1101 A 1 
HETATM 10 O OAQ 2ID . . . C 2 22.447 23.561 7.393 1 42.65 ? OAQ 2ID 1101 A 1 
HETATM 11 P PBB 2ID . . . C 2 22.24 23.721 5.803 1 42.28 ? PBB 2ID 1101 A 1 
HETATM 12 O OAD 2ID . . . C 2 22.504 25.255 5.471 1 36.71 ? OAD 2ID 1101 A 1 
HETATM 13 O OAE 2ID . . . C 2 20.645 23.499 5.538 1 47.94 ? OAE 2ID 1101 A 1 
HETATM 14 O OAB 2ID . . . C 2 23.085 22.754 5.047 1 41.79 ? OAB 2ID 1101 A 1 
HETATM 15 C CAL 2ID . . . C 2 22.064 25.395 10.646 1 47.78 ? CAL 2ID 1101 A 1 
HETATM 16 C CAY 2ID . . . C 2 20.761 24.755 10.304 1 47.72 ? CAY 2ID 1101 A 1 
HETATM 17 C CAX 2ID . . . C 2 20.126 23.662 11.11 1 47.36 ? CAX 2ID 1101 A 1 
HETATM 18 N N9 2ID . . . C 2 18.96 23.143 10.358 1 46.25 ? N9 2ID 1101 A 1 
HETATM 19 C C8 2ID . . . C 2 18.875 22.84 9.07 1 43.71 ? C8 2ID 1101 A 1 
HETATM 20 N N7 2ID . . . C 2 17.654 22.376 8.819 1 43.6 ? N7 2ID 1101 A 1 
HETATM 21 C C5 2ID . . . C 2 16.979 22.391 9.955 1 50.66 ? C5 2ID 1101 A 1 
HETATM 22 C C4 2ID . . . C 2 17.789 22.866 10.903 1 53.25 ? C4 2ID 1101 A 1 
HETATM 23 N N3 2ID . . . C 2 17.345 22.982 12.161 1 68.9 ? N3 2ID 1101 A 1 
HETATM 24 C C2 2ID . . . C 2 16.081 22.617 12.458 1 84.05 ? C2 2ID 1101 A 1 
HETATM 25 I I2 2ID . . . C 2 15.369 22.781 14.426 1 169.07 ? I2 2ID 1101 A 1 
HETATM 26 N N1 2ID . . . C 2 15.265 22.146 11.501 1 63.75 ? N1 2ID 1101 A 1 
HETATM 27 C C6 2ID . . . C 2 15.733 22.036 10.26 1 52.14 ? C6 2ID 1101 A 1 
HETATM 28 N N6 2ID . . . C 2 14.987 21.579 9.275 1 52.26 ? N6 2ID 1101 A 1 
HETATM 29 C CAA 2ID . . . C 2 13.803 20.78 9.641 1 53.98 ? CAA 2ID 1101 A 1 
#
_model_server_stats.io_time_ms              59 
_model_server_stats.parse_time_ms           29 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           351 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           29 
#