data_4XNW # _model_server_result.job_id -4yJVlNVFdrSAy4u3j9PqA _model_server_result.datetime_utc '2024-11-26 23:10:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xnw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1101}' # _entry.id 4XNW # _exptl.entry_id 4XNW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 561.163 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(1R,2S,4S,5S)-4-[2-iodo-6-(methylamino)-9H-purin-9-yl]-2-(phosphonooxy)bicyclo[3.1.0]hex-1-yl]methyl dihydrogen phosphate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 101.82 _cell.angle_beta 95.7 _cell.angle_gamma 100.85 _cell.entry_id 4XNW _cell.length_a 40.67 _cell.length_b 64.97 _cell.length_c 77.57 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XNW _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 41 A CYS 42 1_555 A SG CYS 344 A CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf2 A SG CYS 123 A CYS 124 1_555 A SG CYS 201 A CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf3 B SG CYS 41 C CYS 42 1_555 B SG CYS 344 C CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf4 B SG CYS 123 C CYS 124 1_555 B SG CYS 201 C CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc1 A SG CYS 252 A CYS 1006 1_555 D ZN ZN . A ZN 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc2 A SG CYS 255 A CYS 1009 1_555 D ZN ZN . A ZN 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc3 A SG CYS 285 A CYS 1039 1_555 D ZN ZN . A ZN 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc4 A SG CYS 288 A CYS 1042 1_555 D ZN ZN . A ZN 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc5 B SG CYS 252 C CYS 1006 1_555 F ZN ZN . C ZN 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? metalc ? metalc6 B SG CYS 285 C CYS 1039 1_555 F ZN ZN . C ZN 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc7 B SG CYS 288 C CYS 1042 1_555 F ZN ZN . C ZN 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? # _chem_comp.formula 'C13 H18 I N5 O8 P2' _chem_comp.formula_weight 561.163 _chem_comp.id 2ID _chem_comp.mon_nstd_flag . _chem_comp.name '[(1R,2S,4S,5S)-4-[2-iodo-6-(methylamino)-9H-purin-9-yl]-2-(phosphonooxy)bicyclo[3.1.0]hex-1-yl]methyl dihydrogen phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAB PBB 2ID doub 1 n n OAD PBB 2ID sing 2 n n OAE PBB 2ID sing 3 n n PBB OAQ 2ID sing 4 n n OAQ CAJ 2ID sing 5 n n CAJ CBA 2ID sing 6 n n N7 C8 2ID doub 7 n y N7 C5 2ID sing 8 n y C8 N9 2ID sing 9 n y N6 CAA 2ID sing 10 n n N6 C6 2ID sing 11 n n CBA CAW 2ID sing 12 n n CBA CAY 2ID sing 13 n n CBA CAL 2ID sing 14 n n OAC PBC 2ID doub 15 n n C5 C6 2ID doub 16 n y C5 C4 2ID sing 17 n y OAG PBC 2ID sing 18 n n CAW OAR 2ID sing 19 n n CAW CAK 2ID sing 20 n n C6 N1 2ID sing 21 n y CAY CAL 2ID sing 22 n n CAY CAX 2ID sing 23 n n N9 C4 2ID sing 24 n y N9 CAX 2ID sing 25 n n PBC OAR 2ID sing 26 n n PBC OAF 2ID sing 27 n n C4 N3 2ID doub 28 n y CAX CAK 2ID sing 29 n n N1 C2 2ID doub 30 n y N3 C2 2ID sing 31 n y C2 I2 2ID sing 32 n n OAF H1 2ID sing 33 n n OAG H2 2ID sing 34 n n CAW H3 2ID sing 35 n n CAK H4 2ID sing 36 n n CAK H5 2ID sing 37 n n CAJ H6 2ID sing 38 n n CAJ H7 2ID sing 39 n n OAD H8 2ID sing 40 n n OAE H9 2ID sing 41 n n CAL H10 2ID sing 42 n n CAL H11 2ID sing 43 n n CAY H12 2ID sing 44 n n CAX H13 2ID sing 45 n n C8 H14 2ID sing 46 n n N6 H15 2ID sing 47 n n CAA H16 2ID sing 48 n n CAA H17 2ID sing 49 n n CAA H18 2ID sing 50 n n # _atom_sites.entry_id 4XNW _atom_sites.fract_transf_matrix[1][1] 0.024588 _atom_sites.fract_transf_matrix[1][2] 0.004713 _atom_sites.fract_transf_matrix[1][3] 0.003628 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015672 _atom_sites.fract_transf_matrix[2][3] 0.003682 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013308 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 2ID A 1 1101 400 2ID 2ID . D 3 ZN A 1 1102 2 ZN ZN . E 2 2ID C 1 1101 400 2ID 2ID . F 3 ZN C 1 1102 1 ZN ZN . G 4 HOH A 1 1201 9 HOH HOH . G 4 HOH A 2 1202 10 HOH HOH . G 4 HOH A 3 1203 6 HOH HOH . G 4 HOH A 4 1204 1 HOH HOH . G 4 HOH A 5 1205 3 HOH HOH . G 4 HOH A 6 1206 7 HOH HOH . H 4 HOH C 1 1201 5 HOH HOH . H 4 HOH C 2 1202 8 HOH HOH . H 4 HOH C 3 1203 11 HOH HOH . H 4 HOH C 4 1204 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAF 2ID . . . E 2 36.599 -4.818 -33.608 1 45.69 ? OAF 2ID 1101 C 1 HETATM 2 P PBC 2ID . . . E 2 37.721 -5.435 -34.613 1 50.02 ? PBC 2ID 1101 C 1 HETATM 3 O OAG 2ID . . . E 2 39.045 -5.67 -33.686 1 48.9 ? OAG 2ID 1101 C 1 HETATM 4 O OAC 2ID . . . E 2 37.987 -4.549 -35.777 1 50.2 ? OAC 2ID 1101 C 1 HETATM 5 O OAR 2ID . . . E 2 37.299 -6.874 -35.089 1 44.41 ? OAR 2ID 1101 C 1 HETATM 6 C CAW 2ID . . . E 2 36.097 -7.478 -34.702 1 46.14 ? CAW 2ID 1101 C 1 HETATM 7 C CAK 2ID . . . E 2 35.209 -7.728 -35.925 1 48.8 ? CAK 2ID 1101 C 1 HETATM 8 C CBA 2ID . . . E 2 36.5 -8.825 -34.261 1 46.12 ? CBA 2ID 1101 C 1 HETATM 9 C CAJ 2ID . . . E 2 37.207 -8.866 -32.919 1 43.46 ? CAJ 2ID 1101 C 1 HETATM 10 O OAQ 2ID . . . E 2 36.156 -9.098 -31.965 1 42.82 ? OAQ 2ID 1101 C 1 HETATM 11 P PBB 2ID . . . E 2 36.416 -9.308 -30.357 1 43.44 ? PBB 2ID 1101 C 1 HETATM 12 O OAD 2ID . . . E 2 34.918 -9.305 -29.683 1 40.14 ? OAD 2ID 1101 C 1 HETATM 13 O OAE 2ID . . . E 2 37.358 -8.34 -29.698 1 38.25 ? OAE 2ID 1101 C 1 HETATM 14 O OAB 2ID . . . E 2 36.978 -10.804 -30.36 1 42.09 ? OAB 2ID 1101 C 1 HETATM 15 C CAL 2ID . . . E 2 37.103 -9.557 -35.338 1 47.75 ? CAL 2ID 1101 C 1 HETATM 16 C CAY 2ID . . . E 2 35.694 -9.907 -34.958 1 48.88 ? CAY 2ID 1101 C 1 HETATM 17 C CAX 2ID . . . E 2 34.539 -9.072 -35.636 1 50.61 ? CAX 2ID 1101 C 1 HETATM 18 N N9 2ID . . . E 2 33.335 -8.717 -34.827 1 53.62 ? N9 2ID 1101 C 1 HETATM 19 C C8 2ID . . . E 2 33.255 -8.447 -33.533 1 53.3 ? C8 2ID 1101 C 1 HETATM 20 N N7 2ID . . . E 2 32 -8.142 -33.245 1 59.34 ? N7 2ID 1101 C 1 HETATM 21 C C5 2ID . . . E 2 31.285 -8.192 -34.368 1 64.97 ? C5 2ID 1101 C 1 HETATM 22 C C4 2ID . . . E 2 32.12 -8.539 -35.351 1 63.08 ? C4 2ID 1101 C 1 HETATM 23 N N3 2ID . . . E 2 31.64 -8.668 -36.606 1 79.33 ? N3 2ID 1101 C 1 HETATM 24 C C2 2ID . . . E 2 30.327 -8.442 -36.866 1 91.56 ? C2 2ID 1101 C 1 HETATM 25 I I2 2ID . . . E 2 29.453 -8.608 -38.782 1 153.73 ? I2 2ID 1101 C 1 HETATM 26 N N1 2ID . . . E 2 29.508 -8.095 -35.875 1 77.63 ? N1 2ID 1101 C 1 HETATM 27 C C6 2ID . . . E 2 29.985 -7.971 -34.642 1 66.06 ? C6 2ID 1101 C 1 HETATM 28 N N6 2ID . . . E 2 29.163 -7.628 -33.657 1 61.5 ? N6 2ID 1101 C 1 HETATM 29 C CAA 2ID . . . E 2 27.808 -7.181 -34.024 1 56.95 ? CAA 2ID 1101 C 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #