data_4XNX # _model_server_result.job_id '_q5MobBJ4jza4Hsx3SGYwg' _model_server_result.datetime_utc '2024-10-14 03:17:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xnx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":703}' # _entry.id 4XNX # _exptl.entry_id 4XNX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.654 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XNX _cell.length_a 97.673 _cell.length_b 141.036 _cell.length_c 167.247 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XNX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 BGC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D BGC 1 B 1 BGC A 701 N9S 4 n D GLC 2 B 2 GLC A 701 N9S # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 124 A CYS 148 1_555 A SG CYS 133 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 B SG CYS 23 L CYS 23 1_555 B SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf3 B SG CYS 135 L CYS 135 1_555 B SG CYS 195 L CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf4 C SG CYS 41 H CYS 22 1_555 C SG CYS 115 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf5 C SG CYS 165 H CYS 146 1_555 C SG CYS 220 H CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 D O4 BGC . B BGC 1 1_555 D C1 GLC . B GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 sing metalc ? metalc1 A O GLY 18 A GLY 42 1_555 H NA NA . A NA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc2 A O ALA 20 A ALA 44 1_555 G NA NA . A NA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? metalc ? metalc3 A O VAL 21 A VAL 45 1_555 H NA NA . A NA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? metalc ? metalc4 A OD1 ASN 25 A ASN 49 1_555 G NA NA . A NA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? metalc ? metalc5 A O SER 255 A SER 320 1_555 G NA NA . A NA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? metalc ? metalc6 A OG SER 255 A SER 320 1_555 G NA NA . A NA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc7 A OD1 ASN 287 A ASN 352 1_555 G NA NA . A NA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.837 ? metalc ? metalc8 A O LEU 352 A LEU 417 1_555 H NA NA . A NA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc9 A OG SER 356 A SER 421 1_555 H NA NA . A NA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.782 ? metalc ? metalc10 G NA NA . A NA 704 1_555 K O HOH . A HOH 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.702 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 142 n n C1 C10 CLR sing 143 n n C1 H11 CLR sing 144 n n C1 H12 CLR sing 145 n n C2 C3 CLR sing 146 n n C2 H21 CLR sing 147 n n C2 H22 CLR sing 148 n n C3 C4 CLR sing 149 n n C3 O1 CLR sing 150 n n C3 H3 CLR sing 151 n n C4 C5 CLR sing 152 n n C4 H41 CLR sing 153 n n C4 H42 CLR sing 154 n n C5 C6 CLR doub 155 n n C5 C10 CLR sing 156 n n C6 C7 CLR sing 157 n n C6 H6 CLR sing 158 n n C7 C8 CLR sing 159 n n C7 H71 CLR sing 160 n n C7 H72 CLR sing 161 n n C8 C9 CLR sing 162 n n C8 C14 CLR sing 163 n n C8 H8 CLR sing 164 n n C9 C10 CLR sing 165 n n C9 C11 CLR sing 166 n n C9 H9 CLR sing 167 n n C10 C19 CLR sing 168 n n C11 C12 CLR sing 169 n n C11 H111 CLR sing 170 n n C11 H112 CLR sing 171 n n C12 C13 CLR sing 172 n n C12 H121 CLR sing 173 n n C12 H122 CLR sing 174 n n C13 C14 CLR sing 175 n n C13 C17 CLR sing 176 n n C13 C18 CLR sing 177 n n C14 C15 CLR sing 178 n n C14 H14 CLR sing 179 n n C15 C16 CLR sing 180 n n C15 H151 CLR sing 181 n n C15 H152 CLR sing 182 n n C16 C17 CLR sing 183 n n C16 H161 CLR sing 184 n n C16 H162 CLR sing 185 n n C17 C20 CLR sing 186 n n C17 H17 CLR sing 187 n n C18 H181 CLR sing 188 n n C18 H182 CLR sing 189 n n C18 H183 CLR sing 190 n n C19 H191 CLR sing 191 n n C19 H192 CLR sing 192 n n C19 H193 CLR sing 193 n n C20 C21 CLR sing 194 n n C20 C22 CLR sing 195 n n C20 H20 CLR sing 196 n n C21 H211 CLR sing 197 n n C21 H212 CLR sing 198 n n C21 H213 CLR sing 199 n n C22 C23 CLR sing 200 n n C22 H221 CLR sing 201 n n C22 H222 CLR sing 202 n n C23 C24 CLR sing 203 n n C23 H231 CLR sing 204 n n C23 H232 CLR sing 205 n n C24 C25 CLR sing 206 n n C24 H241 CLR sing 207 n n C24 H242 CLR sing 208 n n C25 C26 CLR sing 209 n n C25 C27 CLR sing 210 n n C25 H25 CLR sing 211 n n C26 H261 CLR sing 212 n n C26 H262 CLR sing 213 n n C26 H263 CLR sing 214 n n C27 H271 CLR sing 215 n n C27 H272 CLR sing 216 n n C27 H273 CLR sing 217 n n O1 H1 CLR sing 218 n n # _atom_sites.entry_id 4XNX _atom_sites.fract_transf_matrix[1][1] 0.010238 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00709 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005979 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 CLR A 1 702 702 CLR CLR . F 5 CLR A 1 703 703 CLR CLR . G 6 NA A 1 704 704 NA NA . H 6 NA A 1 705 705 NA NA . I 7 CL A 1 706 706 CL CL . J 8 41X A 1 707 707 41X 41X . K 9 HOH A 1 801 801 HOH HOH . K 9 HOH A 2 802 802 HOH HOH . K 9 HOH A 3 803 803 HOH HOH . K 9 HOH A 4 804 804 HOH HOH . K 9 HOH A 5 805 805 HOH HOH . L 9 HOH L 1 301 301 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . F 5 1.722 -4.953 49.985 1 122.02 ? C1 CLR 703 A 1 HETATM 2 C C2 CLR . . . F 5 0.834 -5.447 51.137 1 120.51 ? C2 CLR 703 A 1 HETATM 3 C C3 CLR . . . F 5 1.026 -4.586 52.392 1 123.92 ? C3 CLR 703 A 1 HETATM 4 C C4 CLR . . . F 5 0.601 -3.149 52.05 1 121.28 ? C4 CLR 703 A 1 HETATM 5 C C5 CLR . . . F 5 1.343 -2.628 50.826 1 125.04 ? C5 CLR 703 A 1 HETATM 6 C C6 CLR . . . F 5 1.914 -1.404 50.879 1 125.25 ? C6 CLR 703 A 1 HETATM 7 C C7 CLR . . . F 5 2.89 -0.878 49.84 1 125.24 ? C7 CLR 703 A 1 HETATM 8 C C8 CLR . . . F 5 2.586 -1.469 48.465 1 120.35 ? C8 CLR 703 A 1 HETATM 9 C C9 CLR . . . F 5 2.521 -2.995 48.581 1 122.77 ? C9 CLR 703 A 1 HETATM 10 C C10 CLR . . . F 5 1.432 -3.493 49.57 1 122.57 ? C10 CLR 703 A 1 HETATM 11 C C11 CLR . . . F 5 2.417 -3.666 47.194 1 113.27 ? C11 CLR 703 A 1 HETATM 12 C C12 CLR . . . F 5 3.539 -3.265 46.224 1 109.48 ? C12 CLR 703 A 1 HETATM 13 C C13 CLR . . . F 5 3.551 -1.754 46.079 1 113.13 ? C13 CLR 703 A 1 HETATM 14 C C14 CLR . . . F 5 3.683 -1.117 47.456 1 121.22 ? C14 CLR 703 A 1 HETATM 15 C C15 CLR . . . F 5 3.986 0.353 47.168 1 112.34 ? C15 CLR 703 A 1 HETATM 16 C C16 CLR . . . F 5 4.86 0.285 45.913 1 109.66 ? C16 CLR 703 A 1 HETATM 17 C C17 CLR . . . F 5 4.753 -1.146 45.368 1 112.24 ? C17 CLR 703 A 1 HETATM 18 C C18 CLR . . . F 5 2.278 -1.303 45.376 1 114.26 ? C18 CLR 703 A 1 HETATM 19 C C19 CLR . . . F 5 0.063 -3.445 48.883 1 120.96 ? C19 CLR 703 A 1 HETATM 20 C C20 CLR . . . F 5 4.712 -1.123 43.844 1 115.38 ? C20 CLR 703 A 1 HETATM 21 C C21 CLR . . . F 5 4.936 -2.496 43.219 1 106.82 ? C21 CLR 703 A 1 HETATM 22 C C22 CLR . . . F 5 5.777 -0.121 43.393 1 113.17 ? C22 CLR 703 A 1 HETATM 23 C C23 CLR . . . F 5 5.849 0.096 41.886 1 113.09 ? C23 CLR 703 A 1 HETATM 24 C C24 CLR . . . F 5 6.91 -0.815 41.265 1 119.74 ? C24 CLR 703 A 1 HETATM 25 C C25 CLR . . . F 5 7.394 -0.174 39.964 1 118.47 ? C25 CLR 703 A 1 HETATM 26 C C26 CLR . . . F 5 8.609 -0.882 39.359 1 108.63 ? C26 CLR 703 A 1 HETATM 27 C C27 CLR . . . F 5 7.69 1.306 40.213 1 117.71 ? C27 CLR 703 A 1 HETATM 28 O O1 CLR . . . F 5 0.245 -5.091 53.498 1 121 ? O1 CLR 703 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 28 #