data_4XON # _model_server_result.job_id WxZQ44ZPLwn65DvQvxU7vw _model_server_result.datetime_utc '2025-09-04 08:07:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xon # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":805}' # _entry.id 4XON # _exptl.entry_id 4XON _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4XON _cell.length_a 74.172 _cell.length_b 74.172 _cell.length_c 174.611 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XON _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 74.172 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 37.086 64.234836 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ALA 455 A ALA 565 1_555 F NA NA . A NA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? metalc ? metalc2 A O SER 482 A SER 592 1_555 F NA NA . A NA 805 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc3 A O SER 482 A SER 592 1_555 F NA NA . A NA 805 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.588 ? metalc ? metalc4 A OE1 GLN 484 A GLN 594 1_555 F NA NA . A NA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc5 F NA NA . A NA 805 1_555 G O HOH . A HOH 1130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4XON _atom_sites.fract_transf_matrix[1][1] 0.013482 _atom_sites.fract_transf_matrix[1][2] 0.007784 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015568 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005727 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TRS A 1 801 1007 TRS TRS . C 3 FMT A 1 802 1008 FMT FMT . D 3 FMT A 1 803 1009 FMT FMT . E 3 FMT A 1 804 1010 FMT FMT . F 4 NA A 1 805 1011 NA NA . G 5 HOH A 1 901 2159 HOH HOH . G 5 HOH A 2 902 2058 HOH HOH . G 5 HOH A 3 903 2192 HOH HOH . G 5 HOH A 4 904 2035 HOH HOH . G 5 HOH A 5 905 2152 HOH HOH . G 5 HOH A 6 906 2013 HOH HOH . G 5 HOH A 7 907 2209 HOH HOH . G 5 HOH A 8 908 2111 HOH HOH . G 5 HOH A 9 909 2165 HOH HOH . G 5 HOH A 10 910 2063 HOH HOH . G 5 HOH A 11 911 2027 HOH HOH . G 5 HOH A 12 912 2085 HOH HOH . G 5 HOH A 13 913 2213 HOH HOH . G 5 HOH A 14 914 2057 HOH HOH . G 5 HOH A 15 915 2172 HOH HOH . G 5 HOH A 16 916 2032 HOH HOH . G 5 HOH A 17 917 2099 HOH HOH . G 5 HOH A 18 918 2171 HOH HOH . G 5 HOH A 19 919 2200 HOH HOH . G 5 HOH A 20 920 2102 HOH HOH . G 5 HOH A 21 921 2197 HOH HOH . G 5 HOH A 22 922 2228 HOH HOH . G 5 HOH A 23 923 2061 HOH HOH . G 5 HOH A 24 924 2073 HOH HOH . G 5 HOH A 25 925 2221 HOH HOH . G 5 HOH A 26 926 2075 HOH HOH . G 5 HOH A 27 927 2062 HOH HOH . G 5 HOH A 28 928 2227 HOH HOH . G 5 HOH A 29 929 2176 HOH HOH . G 5 HOH A 30 930 2042 HOH HOH . G 5 HOH A 31 931 2174 HOH HOH . G 5 HOH A 32 932 2146 HOH HOH . G 5 HOH A 33 933 2166 HOH HOH . G 5 HOH A 34 934 2039 HOH HOH . G 5 HOH A 35 935 2097 HOH HOH . G 5 HOH A 36 936 2017 HOH HOH . G 5 HOH A 37 937 2237 HOH HOH . G 5 HOH A 38 938 2019 HOH HOH . G 5 HOH A 39 939 2001 HOH HOH . G 5 HOH A 40 940 2149 HOH HOH . G 5 HOH A 41 941 2030 HOH HOH . G 5 HOH A 42 942 2056 HOH HOH . G 5 HOH A 43 943 2037 HOH HOH . G 5 HOH A 44 944 2110 HOH HOH . G 5 HOH A 45 945 2050 HOH HOH . G 5 HOH A 46 946 2114 HOH HOH . G 5 HOH A 47 947 2011 HOH HOH . G 5 HOH A 48 948 2188 HOH HOH . G 5 HOH A 49 949 2147 HOH HOH . G 5 HOH A 50 950 2033 HOH HOH . G 5 HOH A 51 951 2083 HOH HOH . G 5 HOH A 52 952 2004 HOH HOH . G 5 HOH A 53 953 2125 HOH HOH . G 5 HOH A 54 954 2173 HOH HOH . G 5 HOH A 55 955 2141 HOH HOH . G 5 HOH A 56 956 2074 HOH HOH . G 5 HOH A 57 957 2113 HOH HOH . G 5 HOH A 58 958 2154 HOH HOH . G 5 HOH A 59 959 2134 HOH HOH . G 5 HOH A 60 960 2023 HOH HOH . G 5 HOH A 61 961 2155 HOH HOH . G 5 HOH A 62 962 2101 HOH HOH . G 5 HOH A 63 963 2055 HOH HOH . G 5 HOH A 64 964 2223 HOH HOH . G 5 HOH A 65 965 2211 HOH HOH . G 5 HOH A 66 966 2208 HOH HOH . G 5 HOH A 67 967 2194 HOH HOH . G 5 HOH A 68 968 2038 HOH HOH . G 5 HOH A 69 969 2178 HOH HOH . G 5 HOH A 70 970 2127 HOH HOH . G 5 HOH A 71 971 2129 HOH HOH . G 5 HOH A 72 972 2108 HOH HOH . G 5 HOH A 73 973 2235 HOH HOH . G 5 HOH A 74 974 2144 HOH HOH . G 5 HOH A 75 975 2051 HOH HOH . G 5 HOH A 76 976 2082 HOH HOH . G 5 HOH A 77 977 2126 HOH HOH . G 5 HOH A 78 978 2021 HOH HOH . G 5 HOH A 79 979 2096 HOH HOH . G 5 HOH A 80 980 2009 HOH HOH . G 5 HOH A 81 981 2084 HOH HOH . G 5 HOH A 82 982 2121 HOH HOH . G 5 HOH A 83 983 2007 HOH HOH . G 5 HOH A 84 984 2179 HOH HOH . G 5 HOH A 85 985 2163 HOH HOH . G 5 HOH A 86 986 2008 HOH HOH . G 5 HOH A 87 987 2003 HOH HOH . G 5 HOH A 88 988 2069 HOH HOH . G 5 HOH A 89 989 2012 HOH HOH . G 5 HOH A 90 990 2026 HOH HOH . G 5 HOH A 91 991 2206 HOH HOH . G 5 HOH A 92 992 2241 HOH HOH . G 5 HOH A 93 993 2059 HOH HOH . G 5 HOH A 94 994 2100 HOH HOH . G 5 HOH A 95 995 2094 HOH HOH . G 5 HOH A 96 996 2076 HOH HOH . G 5 HOH A 97 997 2234 HOH HOH . G 5 HOH A 98 998 2203 HOH HOH . G 5 HOH A 99 999 2024 HOH HOH . G 5 HOH A 100 1000 2229 HOH HOH . G 5 HOH A 101 1001 2005 HOH HOH . G 5 HOH A 102 1002 2031 HOH HOH . G 5 HOH A 103 1003 2068 HOH HOH . G 5 HOH A 104 1004 2047 HOH HOH . G 5 HOH A 105 1005 2231 HOH HOH . G 5 HOH A 106 1006 2187 HOH HOH . G 5 HOH A 107 1007 2233 HOH HOH . G 5 HOH A 108 1008 2139 HOH HOH . G 5 HOH A 109 1009 2022 HOH HOH . G 5 HOH A 110 1010 2118 HOH HOH . G 5 HOH A 111 1011 2216 HOH HOH . G 5 HOH A 112 1012 2028 HOH HOH . G 5 HOH A 113 1013 2015 HOH HOH . G 5 HOH A 114 1014 2214 HOH HOH . G 5 HOH A 115 1015 2145 HOH HOH . G 5 HOH A 116 1016 2133 HOH HOH . G 5 HOH A 117 1017 2098 HOH HOH . G 5 HOH A 118 1018 2151 HOH HOH . G 5 HOH A 119 1019 2053 HOH HOH . G 5 HOH A 120 1020 2010 HOH HOH . G 5 HOH A 121 1021 2239 HOH HOH . G 5 HOH A 122 1022 2041 HOH HOH . G 5 HOH A 123 1023 2124 HOH HOH . G 5 HOH A 124 1024 2222 HOH HOH . G 5 HOH A 125 1025 2044 HOH HOH . G 5 HOH A 126 1026 2158 HOH HOH . G 5 HOH A 127 1027 2095 HOH HOH . G 5 HOH A 128 1028 2088 HOH HOH . G 5 HOH A 129 1029 2002 HOH HOH . G 5 HOH A 130 1030 2046 HOH HOH . G 5 HOH A 131 1031 2140 HOH HOH . G 5 HOH A 132 1032 2138 HOH HOH . G 5 HOH A 133 1033 2054 HOH HOH . G 5 HOH A 134 1034 2089 HOH HOH . G 5 HOH A 135 1035 2093 HOH HOH . G 5 HOH A 136 1036 2225 HOH HOH . G 5 HOH A 137 1037 2036 HOH HOH . G 5 HOH A 138 1038 2014 HOH HOH . G 5 HOH A 139 1039 2226 HOH HOH . G 5 HOH A 140 1040 2142 HOH HOH . G 5 HOH A 141 1041 2156 HOH HOH . G 5 HOH A 142 1042 2183 HOH HOH . G 5 HOH A 143 1043 2077 HOH HOH . G 5 HOH A 144 1044 2123 HOH HOH . G 5 HOH A 145 1045 2238 HOH HOH . G 5 HOH A 146 1046 2081 HOH HOH . G 5 HOH A 147 1047 2045 HOH HOH . G 5 HOH A 148 1048 2162 HOH HOH . G 5 HOH A 149 1049 2161 HOH HOH . G 5 HOH A 150 1050 2175 HOH HOH . G 5 HOH A 151 1051 2160 HOH HOH . G 5 HOH A 152 1052 2020 HOH HOH . G 5 HOH A 153 1053 2016 HOH HOH . G 5 HOH A 154 1054 2034 HOH HOH . G 5 HOH A 155 1055 2116 HOH HOH . G 5 HOH A 156 1056 2185 HOH HOH . G 5 HOH A 157 1057 2006 HOH HOH . G 5 HOH A 158 1058 2043 HOH HOH . G 5 HOH A 159 1059 2236 HOH HOH . G 5 HOH A 160 1060 2240 HOH HOH . G 5 HOH A 161 1061 2104 HOH HOH . G 5 HOH A 162 1062 2092 HOH HOH . G 5 HOH A 163 1063 2048 HOH HOH . G 5 HOH A 164 1064 2070 HOH HOH . G 5 HOH A 165 1065 2136 HOH HOH . G 5 HOH A 166 1066 2029 HOH HOH . G 5 HOH A 167 1067 2135 HOH HOH . G 5 HOH A 168 1068 2130 HOH HOH . G 5 HOH A 169 1069 2180 HOH HOH . G 5 HOH A 170 1070 2193 HOH HOH . G 5 HOH A 171 1071 2128 HOH HOH . G 5 HOH A 172 1072 2218 HOH HOH . G 5 HOH A 173 1073 2181 HOH HOH . G 5 HOH A 174 1074 2220 HOH HOH . G 5 HOH A 175 1075 2224 HOH HOH . G 5 HOH A 176 1076 2205 HOH HOH . G 5 HOH A 177 1077 2119 HOH HOH . G 5 HOH A 178 1078 2199 HOH HOH . G 5 HOH A 179 1079 2198 HOH HOH . G 5 HOH A 180 1080 2105 HOH HOH . G 5 HOH A 181 1081 2201 HOH HOH . G 5 HOH A 182 1082 2066 HOH HOH . G 5 HOH A 183 1083 2078 HOH HOH . G 5 HOH A 184 1084 2018 HOH HOH . G 5 HOH A 185 1085 2217 HOH HOH . G 5 HOH A 186 1086 2132 HOH HOH . G 5 HOH A 187 1087 2091 HOH HOH . G 5 HOH A 188 1088 2204 HOH HOH . G 5 HOH A 189 1089 2112 HOH HOH . G 5 HOH A 190 1090 2106 HOH HOH . G 5 HOH A 191 1091 2107 HOH HOH . G 5 HOH A 192 1092 2143 HOH HOH . G 5 HOH A 193 1093 2067 HOH HOH . G 5 HOH A 194 1094 2148 HOH HOH . G 5 HOH A 195 1095 2071 HOH HOH . G 5 HOH A 196 1096 2196 HOH HOH . G 5 HOH A 197 1097 2080 HOH HOH . G 5 HOH A 198 1098 2232 HOH HOH . G 5 HOH A 199 1099 2191 HOH HOH . G 5 HOH A 200 1100 2168 HOH HOH . G 5 HOH A 201 1101 2025 HOH HOH . G 5 HOH A 202 1102 2184 HOH HOH . G 5 HOH A 203 1103 2230 HOH HOH . G 5 HOH A 204 1104 2186 HOH HOH . G 5 HOH A 205 1105 2040 HOH HOH . G 5 HOH A 206 1106 2190 HOH HOH . G 5 HOH A 207 1107 2115 HOH HOH . G 5 HOH A 208 1108 2212 HOH HOH . G 5 HOH A 209 1109 2164 HOH HOH . G 5 HOH A 210 1110 2137 HOH HOH . G 5 HOH A 211 1111 2117 HOH HOH . G 5 HOH A 212 1112 2182 HOH HOH . G 5 HOH A 213 1113 2215 HOH HOH . G 5 HOH A 214 1114 2170 HOH HOH . G 5 HOH A 215 1115 2219 HOH HOH . G 5 HOH A 216 1116 2060 HOH HOH . G 5 HOH A 217 1117 2150 HOH HOH . G 5 HOH A 218 1118 2052 HOH HOH . G 5 HOH A 219 1119 2131 HOH HOH . G 5 HOH A 220 1120 2065 HOH HOH . G 5 HOH A 221 1121 2120 HOH HOH . G 5 HOH A 222 1122 2079 HOH HOH . G 5 HOH A 223 1123 2087 HOH HOH . G 5 HOH A 224 1124 2207 HOH HOH . G 5 HOH A 225 1125 2109 HOH HOH . G 5 HOH A 226 1126 2189 HOH HOH . G 5 HOH A 227 1127 2064 HOH HOH . G 5 HOH A 228 1128 2167 HOH HOH . G 5 HOH A 229 1129 2049 HOH HOH . G 5 HOH A 230 1130 2210 HOH HOH . G 5 HOH A 231 1131 2157 HOH HOH . G 5 HOH A 232 1132 2169 HOH HOH . G 5 HOH A 233 1133 2090 HOH HOH . G 5 HOH A 234 1134 2195 HOH HOH . G 5 HOH A 235 1135 2103 HOH HOH . G 5 HOH A 236 1136 2086 HOH HOH . G 5 HOH A 237 1137 2072 HOH HOH . G 5 HOH A 238 1138 2202 HOH HOH . G 5 HOH A 239 1139 2122 HOH HOH . G 5 HOH A 240 1140 2177 HOH HOH . G 5 HOH A 241 1141 2153 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 4 _atom_site.Cartn_x 26.696 _atom_site.Cartn_y 50.229 _atom_site.Cartn_z 68.019 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 33.47 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 805 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 364 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #