data_4XP1 # _model_server_result.job_id PtGzx90ErD05xCqxi-4iPQ _model_server_result.datetime_utc '2025-02-17 17:03:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xp1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":708}' # _entry.id 4XP1 # _exptl.entry_id 4XP1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 153.178 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description L-DOPAMINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XP1 _cell.length_a 96.797 _cell.length_b 140.181 _cell.length_c 166.195 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XP1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 9 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D GLC 1 B 1 GLC M 1 MAL 4 n D GLC 2 B 2 GLC M 1 MAL 4 n E GLC 1 C 1 GLC M 2 MAL 4 n E GLC 2 C 2 GLC M 2 MAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 124 A CYS 148 1_555 A SG CYS 133 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf2 B SG CYS 23 L CYS 23 1_555 B SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf3 B SG CYS 135 L CYS 135 1_555 B SG CYS 195 L CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 C SG CYS 22 H CYS 22 1_555 C SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf5 C SG CYS 146 H CYS 146 1_555 C SG CYS 201 H CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? covale ? covale1 A ND2 ASN 117 A ASN 141 1_555 I C1 NAG . A NAG 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale2 D O4 GLC . B GLC 1 1_555 D C1 GLC . B GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 sing covale ? covale3 E O4 GLC . C GLC 1 1_555 E C1 GLC . C GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 sing metalc ? metalc1 A O GLY 18 A GLY 42 1_555 G NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc2 A O ALA 20 A ALA 44 1_555 F NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc3 A O VAL 21 A VAL 45 1_555 G NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? metalc ? metalc4 A OD1 ASN 25 A ASN 49 1_555 F NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc5 A O SER 255 A SER 320 1_555 F NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.643 ? metalc ? metalc6 A OG SER 255 A SER 320 1_555 F NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc7 A OD1 ASN 287 A ASN 352 1_555 F NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc8 A O LEU 352 A LEU 417 1_555 G NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc9 A OD2 ASP 355 A ASP 420 1_555 G NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.043 ? metalc ? metalc10 A OG SER 356 A SER 421 1_555 G NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? metalc ? metalc11 F NA NA . A NA 701 1_555 P O HOH . A HOH 814 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.886 ? metalc ? metalc12 B O ASP 152 L ASP 152 1_555 O NA NA . L NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc13 B OG1 THR 194 L THR 194 1_555 O NA NA . L NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? # _chem_comp.formula 'C8 H11 N O2' _chem_comp.formula_weight 153.178 _chem_comp.id LDP _chem_comp.mon_nstd_flag . _chem_comp.name L-DOPAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DOPAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 C1 LDP sing 283 n n C7 C8 LDP sing 284 n n C7 H71 LDP sing 285 n n C7 H72 LDP sing 286 n n C1 C2 LDP doub 287 n y C1 C6 LDP sing 288 n y C4 C5 LDP sing 289 n y C4 C3 LDP doub 290 n y C4 O2 LDP sing 291 n n C2 C3 LDP sing 292 n y C2 H2 LDP sing 293 n n C6 C5 LDP doub 294 n y C6 H6 LDP sing 295 n n C5 H5 LDP sing 296 n n C3 O1 LDP sing 297 n n O1 HO1 LDP sing 298 n n O2 HO2 LDP sing 299 n n C8 N1 LDP sing 300 n n C8 H81 LDP sing 301 n n C8 H82 LDP sing 302 n n N1 HN11 LDP sing 303 n n N1 HN12 LDP sing 304 n n # _atom_sites.entry_id 4XP1 _atom_sites.fract_transf_matrix[1][1] 0.010331 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007134 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006017 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 5 NA A 1 701 701 NA NA . G 5 NA A 1 702 702 NA NA . H 6 CL A 1 703 704 CL CL . I 7 NAG A 1 706 1 NAG NAG . J 8 P4G A 1 707 1 P4G P4G . K 9 LDP A 1 708 2 LDP LDP . L 10 EDO A 1 709 3 EDO EDO . M 11 Y01 A 1 710 4 Y01 CHS . N 12 CLR A 1 711 5 CLR CLR . O 5 NA L 1 301 703 NA NA . P 13 HOH A 1 801 12 HOH HOH . P 13 HOH A 2 802 2 HOH HOH . P 13 HOH A 3 803 6 HOH HOH . P 13 HOH A 4 804 19 HOH HOH . P 13 HOH A 5 805 11 HOH HOH . P 13 HOH A 6 806 5 HOH HOH . P 13 HOH A 7 807 4 HOH HOH . P 13 HOH A 8 808 20 HOH HOH . P 13 HOH A 9 809 3 HOH HOH . P 13 HOH A 10 810 9 HOH HOH . P 13 HOH A 11 811 18 HOH HOH . P 13 HOH A 12 812 13 HOH HOH . P 13 HOH A 13 813 10 HOH HOH . P 13 HOH A 14 814 1 HOH HOH . P 13 HOH A 15 815 17 HOH HOH . Q 13 HOH L 1 401 21 HOH HOH . Q 13 HOH L 2 402 14 HOH HOH . Q 13 HOH L 3 403 15 HOH HOH . R 13 HOH H 1 301 16 HOH HOH . R 13 HOH H 2 302 8 HOH HOH . R 13 HOH H 3 303 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 LDP . . . K 9 -9.19 2.991 -26.818 1 74.6 ? C7 LDP 708 A 1 HETATM 2 C C1 LDP . . . K 9 -10.34 3.577 -26.027 1 67.35 ? C1 LDP 708 A 1 HETATM 3 C C4 LDP . . . K 9 -12.498 4.64 -24.661 1 69.83 ? C4 LDP 708 A 1 HETATM 4 C C2 LDP . . . K 9 -10.201 3.953 -24.698 1 64.63 ? C2 LDP 708 A 1 HETATM 5 C C6 LDP . . . K 9 -11.552 3.736 -26.67 1 67.79 ? C6 LDP 708 A 1 HETATM 6 C C5 LDP . . . K 9 -12.63 4.265 -25.988 1 70.47 ? C5 LDP 708 A 1 HETATM 7 C C3 LDP . . . K 9 -11.286 4.483 -24.014 1 67.57 ? C3 LDP 708 A 1 HETATM 8 O O1 LDP . . . K 9 -11.168 4.87 -22.666 1 67.63 ? O1 LDP 708 A 1 HETATM 9 O O2 LDP . . . K 9 -13.604 5.179 -23.976 1 71.74 ? O2 LDP 708 A 1 HETATM 10 C C8 LDP . . . K 9 -8.275 2.214 -25.896 1 78.41 ? C8 LDP 708 A 1 HETATM 11 N N1 LDP . . . K 9 -7.384 1.41 -26.667 1 86.24 ? N1 LDP 708 A 1 HETATM 12 H H71 LDP . . . K 9 -8.685 3.713 -27.243 1 89.52 ? H71 LDP 708 A 1 HETATM 13 H H72 LDP . . . K 9 -9.541 2.392 -27.507 1 89.52 ? H72 LDP 708 A 1 HETATM 14 H H2 LDP . . . K 9 -9.344 3.84 -24.244 1 77.55 ? H2 LDP 708 A 1 HETATM 15 H H6 LDP . . . K 9 -11.647 3.471 -27.604 1 81.34 ? H6 LDP 708 A 1 HETATM 16 H H5 LDP . . . K 9 -13.487 4.376 -26.443 1 84.56 ? H5 LDP 708 A 1 HETATM 17 H HO1 LDP . . . K 9 -10.973 5.736 -22.623 1 81.16 ? HO1 LDP 708 A 1 HETATM 18 H HO2 LDP . . . K 9 -14.25 4.57 -23.931 1 86.09 ? HO2 LDP 708 A 1 HETATM 19 H H81 LDP . . . K 9 -8.813 1.638 -25.314 1 94.09 ? H81 LDP 708 A 1 HETATM 20 H H82 LDP . . . K 9 -7.758 2.84 -25.348 1 94.09 ? H82 LDP 708 A 1 HETATM 21 H HN11 LDP . . . K 9 -7.39 0.553 -26.344 1 103.49 ? HN11 LDP 708 A 1 HETATM 22 H HN12 LDP . . . K 9 -6.536 1.753 -26.609 1 103.49 ? HN12 LDP 708 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #