data_4XP1 # _model_server_result.job_id c4NwZrY-TWtGAEkPKUQpmw _model_server_result.datetime_utc '2024-11-28 01:17:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xp1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":710}' # _entry.id 4XP1 # _exptl.entry_id 4XP1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 486.726 _entity.id 11 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XP1 _cell.length_a 96.797 _cell.length_b 140.181 _cell.length_c 166.195 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XP1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 11 _struct_asym.id M _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D GLC 1 B 1 GLC M 1 MAL 4 n D GLC 2 B 2 GLC M 1 MAL 4 n E GLC 1 C 1 GLC M 2 MAL 4 n E GLC 2 C 2 GLC M 2 MAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 124 A CYS 148 1_555 A SG CYS 133 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf2 B SG CYS 23 L CYS 23 1_555 B SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf3 B SG CYS 135 L CYS 135 1_555 B SG CYS 195 L CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 C SG CYS 22 H CYS 22 1_555 C SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf5 C SG CYS 146 H CYS 146 1_555 C SG CYS 201 H CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? covale ? covale1 A ND2 ASN 117 A ASN 141 1_555 I C1 NAG . A NAG 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale2 D O4 GLC . B GLC 1 1_555 D C1 GLC . B GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 sing covale ? covale3 E O4 GLC . C GLC 1 1_555 E C1 GLC . C GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 sing metalc ? metalc1 A O GLY 18 A GLY 42 1_555 G NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc2 A O ALA 20 A ALA 44 1_555 F NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc3 A O VAL 21 A VAL 45 1_555 G NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? metalc ? metalc4 A OD1 ASN 25 A ASN 49 1_555 F NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc5 A O SER 255 A SER 320 1_555 F NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.643 ? metalc ? metalc6 A OG SER 255 A SER 320 1_555 F NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc7 A OD1 ASN 287 A ASN 352 1_555 F NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc8 A O LEU 352 A LEU 417 1_555 G NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc9 A OD2 ASP 355 A ASP 420 1_555 G NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.043 ? metalc ? metalc10 A OG SER 356 A SER 421 1_555 G NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? metalc ? metalc11 F NA NA . A NA 701 1_555 P O HOH . A HOH 814 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.886 ? metalc ? metalc12 B O ASP 152 L ASP 152 1_555 O NA NA . L NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc13 B OG1 THR 194 L THR 194 1_555 O NA NA . L NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 566 n n CBA CAB Y01 sing 567 n n CBA CAN Y01 sing 568 n n CAN CAJ Y01 sing 569 n n CAJ CAO Y01 sing 570 n n CAO CBB Y01 sing 571 n n CBB CAC Y01 sing 572 n n CBB CBE Y01 sing 573 n n CBE CAP Y01 sing 574 n n CBE CBI Y01 sing 575 n n CAP CAQ Y01 sing 576 n n CAQ CBG Y01 sing 577 n n CBG CBI Y01 sing 578 n n CBG CBD Y01 sing 579 n n CBI CAE Y01 sing 580 n n CBI CAU Y01 sing 581 n n CAU CAS Y01 sing 582 n n CAS CBF Y01 sing 583 n n CBF CBD Y01 sing 584 n n CBF CBH Y01 sing 585 n n CBD CAK Y01 sing 586 n n CAK CAI Y01 sing 587 n n CAI CAZ Y01 doub 588 n n CAZ CAV Y01 sing 589 n n CAZ CBH Y01 sing 590 n n CAV CBC Y01 sing 591 n n CBH CAD Y01 sing 592 n n CBH CAT Y01 sing 593 n n CAT CAR Y01 sing 594 n n CAR CBC Y01 sing 595 n n CBC OAW Y01 sing 596 n n OAW CAY Y01 sing 597 n n CAY OAG Y01 doub 598 n n CAY CAM Y01 sing 599 n n CAM CAL Y01 sing 600 n n CAL CAX Y01 sing 601 n n CAX OAH Y01 sing 602 n n CAX OAF Y01 doub 603 n n CAA HAA1 Y01 sing 604 n n CAA HAA2 Y01 sing 605 n n CAA HAA3 Y01 sing 606 n n CBA HBA Y01 sing 607 n n CAB HAB1 Y01 sing 608 n n CAB HAB2 Y01 sing 609 n n CAB HAB3 Y01 sing 610 n n CAN HAN1 Y01 sing 611 n n CAN HAN2 Y01 sing 612 n n CAJ HAJ1 Y01 sing 613 n n CAJ HAJ2 Y01 sing 614 n n CAO HAO1 Y01 sing 615 n n CAO HAO2 Y01 sing 616 n n CBB HBB Y01 sing 617 n n CAC HAC1 Y01 sing 618 n n CAC HAC2 Y01 sing 619 n n CAC HAC3 Y01 sing 620 n n CBE HBE Y01 sing 621 n n CAP HAP1 Y01 sing 622 n n CAP HAP2 Y01 sing 623 n n CAQ HAQ1 Y01 sing 624 n n CAQ HAQ2 Y01 sing 625 n n CBG HBG Y01 sing 626 n n CBD HBD Y01 sing 627 n n CAE HAE1 Y01 sing 628 n n CAE HAE2 Y01 sing 629 n n CAE HAE3 Y01 sing 630 n n CAU HAU1 Y01 sing 631 n n CAU HAU2 Y01 sing 632 n n CAS HAS1 Y01 sing 633 n n CAS HAS2 Y01 sing 634 n n CBF HBF Y01 sing 635 n n CAK HAK1 Y01 sing 636 n n CAK HAK2 Y01 sing 637 n n CAI HAI Y01 sing 638 n n CAV HAV1 Y01 sing 639 n n CAV HAV2 Y01 sing 640 n n CBC HBC Y01 sing 641 n n CAD HAD1 Y01 sing 642 n n CAD HAD2 Y01 sing 643 n n CAD HAD3 Y01 sing 644 n n CAT HAT1 Y01 sing 645 n n CAT HAT2 Y01 sing 646 n n CAR HAR1 Y01 sing 647 n n CAR HAR2 Y01 sing 648 n n CAM HAM1 Y01 sing 649 n n CAM HAM2 Y01 sing 650 n n CAL HAL1 Y01 sing 651 n n CAL HAL2 Y01 sing 652 n n OAH HAH Y01 sing 653 n n # _atom_sites.entry_id 4XP1 _atom_sites.fract_transf_matrix[1][1] 0.010331 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007134 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006017 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 5 NA A 1 701 701 NA NA . G 5 NA A 1 702 702 NA NA . H 6 CL A 1 703 704 CL CL . I 7 NAG A 1 706 1 NAG NAG . J 8 P4G A 1 707 1 P4G P4G . K 9 LDP A 1 708 2 LDP LDP . L 10 EDO A 1 709 3 EDO EDO . M 11 Y01 A 1 710 4 Y01 CHS . N 12 CLR A 1 711 5 CLR CLR . O 5 NA L 1 301 703 NA NA . P 13 HOH A 1 801 12 HOH HOH . P 13 HOH A 2 802 2 HOH HOH . P 13 HOH A 3 803 6 HOH HOH . P 13 HOH A 4 804 19 HOH HOH . P 13 HOH A 5 805 11 HOH HOH . P 13 HOH A 6 806 5 HOH HOH . P 13 HOH A 7 807 4 HOH HOH . P 13 HOH A 8 808 20 HOH HOH . P 13 HOH A 9 809 3 HOH HOH . P 13 HOH A 10 810 9 HOH HOH . P 13 HOH A 11 811 18 HOH HOH . P 13 HOH A 12 812 13 HOH HOH . P 13 HOH A 13 813 10 HOH HOH . P 13 HOH A 14 814 1 HOH HOH . P 13 HOH A 15 815 17 HOH HOH . Q 13 HOH L 1 401 21 HOH HOH . Q 13 HOH L 2 402 14 HOH HOH . Q 13 HOH L 3 403 15 HOH HOH . R 13 HOH H 1 301 16 HOH HOH . R 13 HOH H 2 302 8 HOH HOH . R 13 HOH H 3 303 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . M 11 7.035 -0.91 -39.892 1 71.38 ? CAA Y01 710 A 1 HETATM 2 C CBA Y01 . . . M 11 7.397 0.386 -39.154 1 70.12 ? CBA Y01 710 A 1 HETATM 3 C CAB Y01 . . . M 11 8.661 0.179 -38.278 1 74.47 ? CAB Y01 710 A 1 HETATM 4 C CAN Y01 . . . M 11 7.609 1.543 -40.14 1 71.01 ? CAN Y01 710 A 1 HETATM 5 C CAJ Y01 . . . M 11 6.292 1.943 -40.889 1 79.72 ? CAJ Y01 710 A 1 HETATM 6 C CAO Y01 . . . M 11 5.824 0.911 -41.979 1 76.97 ? CAO Y01 710 A 1 HETATM 7 C CBB Y01 . . . M 11 4.551 1.474 -42.792 1 84.85 ? CBB Y01 710 A 1 HETATM 8 C CAC Y01 . . . M 11 4.222 2.896 -42.269 1 76.99 ? CAC Y01 710 A 1 HETATM 9 C CBE Y01 . . . M 11 4.855 1.511 -44.12 1 86.79 ? CBE Y01 710 A 1 HETATM 10 C CAP Y01 . . . M 11 5.035 -0.033 -44.69 1 84.57 ? CAP Y01 710 A 1 HETATM 11 C CAQ Y01 . . . M 11 4.197 -0.09 -46.007 1 77.47 ? CAQ Y01 710 A 1 HETATM 12 C CBG Y01 . . . M 11 3.865 1.426 -46.383 1 82.09 ? CBG Y01 710 A 1 HETATM 13 C CBI Y01 . . . M 11 3.647 2.123 -45.04 1 82.72 ? CBI Y01 710 A 1 HETATM 14 C CAE Y01 . . . M 11 2.39 1.528 -44.471 1 85.1 ? CAE Y01 710 A 1 HETATM 15 C CAU Y01 . . . M 11 3.387 3.505 -45.147 1 80.14 ? CAU Y01 710 A 1 HETATM 16 C CAS Y01 . . . M 11 2.212 3.818 -46.249 1 81.74 ? CAS Y01 710 A 1 HETATM 17 C CBF Y01 . . . M 11 2.595 3.227 -47.586 1 83.09 ? CBF Y01 710 A 1 HETATM 18 C CBD Y01 . . . M 11 2.803 1.759 -47.463 1 85.41 ? CBD Y01 710 A 1 HETATM 19 C CAK Y01 . . . M 11 3.245 1.056 -48.854 1 88.53 ? CAK Y01 710 A 1 HETATM 20 C CAI Y01 . . . M 11 2.403 1.454 -50.015 1 90.93 ? CAI Y01 710 A 1 HETATM 21 C CAZ Y01 . . . M 11 1.696 3.006 -50.027 1 95.02 ? CAZ Y01 710 A 1 HETATM 22 C CAV Y01 . . . M 11 0.836 3.403 -51.193 1 90.24 ? CAV Y01 710 A 1 HETATM 23 C CBH Y01 . . . M 11 1.469 3.648 -48.763 1 89.96 ? CBH Y01 710 A 1 HETATM 24 C CAD Y01 . . . M 11 0.058 3.249 -48.263 1 87.16 ? CAD Y01 710 A 1 HETATM 25 C CAT Y01 . . . M 11 1.511 5.159 -48.899 1 86.93 ? CAT Y01 710 A 1 HETATM 26 C CAR Y01 . . . M 11 0.582 5.624 -50.057 1 95.33 ? CAR Y01 710 A 1 HETATM 27 C CBC Y01 . . . M 11 0.947 4.897 -51.371 1 98.06 ? CBC Y01 710 A 1 HETATM 28 O OAW Y01 . . . M 11 0.115 5.347 -52.434 1 105.62 ? OAW Y01 710 A 1 HETATM 29 C CAY Y01 . . . M 11 0.69 6.411 -53.215 1 115.52 ? CAY Y01 710 A 1 HETATM 30 O OAG Y01 . . . M 11 1.681 6.208 -53.889 1 120.14 ? OAG Y01 710 A 1 HETATM 31 C CAM Y01 . . . M 11 0.063 7.818 -53.219 1 109.67 ? CAM Y01 710 A 1 HETATM 32 C CAL Y01 . . . M 11 -0.641 8.103 -54.533 1 111.5 ? CAL Y01 710 A 1 HETATM 33 C CAX Y01 . . . M 11 -1.927 7.322 -54.651 1 108.85 ? CAX Y01 710 A 1 HETATM 34 O OAH Y01 . . . M 11 -3.019 7.941 -54.696 1 105.77 ? OAH Y01 710 A 1 HETATM 35 O OAF Y01 . . . M 11 -1.909 6.056 -54.699 1 100.24 -1 OAF Y01 710 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 35 #