data_4XP4 # _model_server_result.job_id OSn2BRDfRFiFOCV8436fIg _model_server_result.datetime_utc '2024-11-21 14:03:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xp4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":701}' # _entry.id 4XP4 # _exptl.entry_id 4XP4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 486.726 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XP4 _cell.length_a 97.063 _cell.length_b 140.727 _cell.length_c 166.688 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XP4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D GLC 1 B 1 GLC A 704 MAL 4 n D GLC 2 B 2 GLC A 704 MAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 129 A CYS 148 1_555 A SG CYS 138 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 B SG CYS 45 L CYS 23 1_555 B SG CYS 111 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 B SG CYS 157 L CYS 135 1_555 B SG CYS 217 L CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 C SG CYS 41 H CYS 22 1_555 C SG CYS 115 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 C SG CYS 165 H CYS 146 1_555 C SG CYS 220 H CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 D O4 GLC . B GLC 1 1_555 D C1 GLC . B GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.415 sing metalc ? metalc1 A O GLY 23 A GLY 42 1_555 K NA NA . A NA 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc2 A O ALA 25 A ALA 44 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.601 ? metalc ? metalc3 A O VAL 26 A VAL 45 1_555 K NA NA . A NA 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc4 A OD1 ASN 30 A ASN 49 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? metalc ? metalc5 A O SER 260 A SER 320 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.91 ? metalc ? metalc6 A OG SER 260 A SER 320 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? metalc ? metalc7 A OD1 ASN 292 A ASN 352 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.131 ? metalc ? metalc8 A O LEU 357 A LEU 417 1_555 K NA NA . A NA 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc9 A OD1 ASP 360 A ASP 420 1_555 K NA NA . A NA 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc10 A OG SER 361 A SER 421 1_555 K NA NA . A NA 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 550 n n CBA CAB Y01 sing 551 n n CBA CAN Y01 sing 552 n n CAN CAJ Y01 sing 553 n n CAJ CAO Y01 sing 554 n n CAO CBB Y01 sing 555 n n CBB CAC Y01 sing 556 n n CBB CBE Y01 sing 557 n n CBE CAP Y01 sing 558 n n CBE CBI Y01 sing 559 n n CAP CAQ Y01 sing 560 n n CAQ CBG Y01 sing 561 n n CBG CBI Y01 sing 562 n n CBG CBD Y01 sing 563 n n CBI CAE Y01 sing 564 n n CBI CAU Y01 sing 565 n n CAU CAS Y01 sing 566 n n CAS CBF Y01 sing 567 n n CBF CBD Y01 sing 568 n n CBF CBH Y01 sing 569 n n CBD CAK Y01 sing 570 n n CAK CAI Y01 sing 571 n n CAI CAZ Y01 doub 572 n n CAZ CAV Y01 sing 573 n n CAZ CBH Y01 sing 574 n n CAV CBC Y01 sing 575 n n CBH CAD Y01 sing 576 n n CBH CAT Y01 sing 577 n n CAT CAR Y01 sing 578 n n CAR CBC Y01 sing 579 n n CBC OAW Y01 sing 580 n n OAW CAY Y01 sing 581 n n CAY OAG Y01 doub 582 n n CAY CAM Y01 sing 583 n n CAM CAL Y01 sing 584 n n CAL CAX Y01 sing 585 n n CAX OAH Y01 sing 586 n n CAX OAF Y01 doub 587 n n CAA HAA1 Y01 sing 588 n n CAA HAA2 Y01 sing 589 n n CAA HAA3 Y01 sing 590 n n CBA HBA Y01 sing 591 n n CAB HAB1 Y01 sing 592 n n CAB HAB2 Y01 sing 593 n n CAB HAB3 Y01 sing 594 n n CAN HAN1 Y01 sing 595 n n CAN HAN2 Y01 sing 596 n n CAJ HAJ1 Y01 sing 597 n n CAJ HAJ2 Y01 sing 598 n n CAO HAO1 Y01 sing 599 n n CAO HAO2 Y01 sing 600 n n CBB HBB Y01 sing 601 n n CAC HAC1 Y01 sing 602 n n CAC HAC2 Y01 sing 603 n n CAC HAC3 Y01 sing 604 n n CBE HBE Y01 sing 605 n n CAP HAP1 Y01 sing 606 n n CAP HAP2 Y01 sing 607 n n CAQ HAQ1 Y01 sing 608 n n CAQ HAQ2 Y01 sing 609 n n CBG HBG Y01 sing 610 n n CBD HBD Y01 sing 611 n n CAE HAE1 Y01 sing 612 n n CAE HAE2 Y01 sing 613 n n CAE HAE3 Y01 sing 614 n n CAU HAU1 Y01 sing 615 n n CAU HAU2 Y01 sing 616 n n CAS HAS1 Y01 sing 617 n n CAS HAS2 Y01 sing 618 n n CBF HBF Y01 sing 619 n n CAK HAK1 Y01 sing 620 n n CAK HAK2 Y01 sing 621 n n CAI HAI Y01 sing 622 n n CAV HAV1 Y01 sing 623 n n CAV HAV2 Y01 sing 624 n n CBC HBC Y01 sing 625 n n CAD HAD1 Y01 sing 626 n n CAD HAD2 Y01 sing 627 n n CAD HAD3 Y01 sing 628 n n CAT HAT1 Y01 sing 629 n n CAT HAT2 Y01 sing 630 n n CAR HAR1 Y01 sing 631 n n CAR HAR2 Y01 sing 632 n n CAM HAM1 Y01 sing 633 n n CAM HAM2 Y01 sing 634 n n CAL HAL1 Y01 sing 635 n n CAL HAL2 Y01 sing 636 n n OAH HAH Y01 sing 637 n n # _atom_sites.entry_id 4XP4 _atom_sites.fract_transf_matrix[1][1] 0.010303 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007106 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005999 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 Y01 A 1 701 701 Y01 Y01 . F 6 P4G A 1 702 702 P4G P4G . G 6 P4G A 1 703 703 P4G P4G . H 7 CLR A 1 705 705 CLR CLR . I 8 COC A 1 706 706 COC COC . J 9 NA A 1 707 707 NA NA . K 9 NA A 1 708 708 NA NA . L 10 CL A 1 709 709 CL CL . M 11 HOH A 1 801 801 HOH HOH . M 11 HOH A 2 802 808 HOH HOH . M 11 HOH A 3 803 803 HOH HOH . M 11 HOH A 4 804 807 HOH HOH . M 11 HOH A 5 805 802 HOH HOH . M 11 HOH A 6 806 806 HOH HOH . M 11 HOH A 7 807 805 HOH HOH . M 11 HOH A 8 808 804 HOH HOH . N 11 HOH L 1 301 301 HOH HOH . N 11 HOH L 2 302 302 HOH HOH . O 11 HOH H 1 301 302 HOH HOH . O 11 HOH H 2 302 301 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . E 5 186.406 283.205 39.347 1 74.34 ? CAA Y01 701 A 1 HETATM 2 C CBA Y01 . . . E 5 185.964 281.828 39.864 1 75.85 ? CBA Y01 701 A 1 HETATM 3 C CAB Y01 . . . E 5 184.813 281.247 38.998 1 74.03 ? CAB Y01 701 A 1 HETATM 4 C CAN Y01 . . . E 5 187.148 280.849 39.916 1 72.2 ? CAN Y01 701 A 1 HETATM 5 C CAJ Y01 . . . E 5 187.791 280.762 41.339 1 67.57 ? CAJ Y01 701 A 1 HETATM 6 C CAO Y01 . . . E 5 187.909 282.155 42.049 1 72.49 ? CAO Y01 701 A 1 HETATM 7 C CBB Y01 . . . E 5 188.176 281.992 43.631 1 85.68 ? CBB Y01 701 A 1 HETATM 8 C CAC Y01 . . . E 5 187.685 280.597 44.09 1 84.56 ? CAC Y01 701 A 1 HETATM 9 C CBE Y01 . . . E 5 189.508 282.081 43.891 1 85.74 ? CBE Y01 701 A 1 HETATM 10 C CAP Y01 . . . E 5 190.233 283.261 42.99 1 75.89 ? CAP Y01 701 A 1 HETATM 11 C CAQ Y01 . . . E 5 191.437 283.725 43.876 1 86.69 ? CAQ Y01 701 A 1 HETATM 12 C CBG Y01 . . . E 5 191.26 283.07 45.328 1 79.69 ? CBG Y01 701 A 1 HETATM 13 C CBI Y01 . . . E 5 189.81 282.603 45.41 1 81.88 ? CBI Y01 701 A 1 HETATM 14 C CAE Y01 . . . E 5 189.001 283.859 45.573 1 86.93 ? CAE Y01 701 A 1 HETATM 15 C CAU Y01 . . . E 5 189.553 281.831 46.558 1 79.22 ? CAU Y01 701 A 1 HETATM 16 C CAS Y01 . . . E 5 189.965 282.659 47.916 1 82.32 ? CAS Y01 701 A 1 HETATM 17 C CBF Y01 . . . E 5 191.414 283.104 47.872 1 81.89 ? CBF Y01 701 A 1 HETATM 18 C CBD Y01 . . . E 5 191.762 283.799 46.6 1 76 ? CBD Y01 701 A 1 HETATM 19 C CAK Y01 . . . E 5 193.361 283.99 46.482 1 89.2 ? CAK Y01 701 A 1 HETATM 20 C CAI Y01 . . . E 5 193.948 284.603 47.701 1 83.45 ? CAI Y01 701 A 1 HETATM 21 C CAZ Y01 . . . E 5 192.91 284.92 49.007 1 86.34 ? CAZ Y01 701 A 1 HETATM 22 C CAV Y01 . . . E 5 193.394 285.797 50.121 1 83.39 ? CAV Y01 701 A 1 HETATM 23 C CBH Y01 . . . E 5 191.775 284.068 49.207 1 89.9 ? CBH Y01 701 A 1 HETATM 24 C CAD Y01 . . . E 5 190.549 284.972 49.505 1 93.51 ? CAD Y01 701 A 1 HETATM 25 C CAT Y01 . . . E 5 192.017 283.168 50.401 1 86.46 ? CAT Y01 701 A 1 HETATM 26 C CAR Y01 . . . E 5 192.284 284.04 51.662 1 93.59 ? CAR Y01 701 A 1 HETATM 27 C CBC Y01 . . . E 5 193.39 285.111 51.469 1 90.33 ? CBC Y01 701 A 1 HETATM 28 O OAW Y01 . . . E 5 193.196 286.134 52.434 1 95.55 ? OAW Y01 701 A 1 HETATM 29 C CAY Y01 . . . E 5 194.025 286.047 53.595 1 99.19 ? CAY Y01 701 A 1 HETATM 30 O OAG Y01 . . . E 5 194.771 285.101 53.75 1 102.96 ? OAG Y01 701 A 1 HETATM 31 C CAM Y01 . . . E 5 193.967 287.176 54.635 1 95.4 ? CAM Y01 701 A 1 HETATM 32 C CAL Y01 . . . E 5 195.351 287.666 55.027 1 98.26 ? CAL Y01 701 A 1 HETATM 33 C CAX Y01 . . . E 5 195.579 289.095 54.589 1 108.89 ? CAX Y01 701 A 1 HETATM 34 O OAH Y01 . . . E 5 196.747 289.569 54.605 1 101.12 ? OAH Y01 701 A 1 HETATM 35 O OAF Y01 . . . E 5 194.603 289.812 54.203 1 105.87 1 OAF Y01 701 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 35 #