data_4XP4 # _model_server_result.job_id 2AbN1z5Im-k4KmYkh2e9vg _model_server_result.datetime_utc '2024-11-21 14:23:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xp4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":702}' # _entry.id 4XP4 # _exptl.entry_id 4XP4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 162.227 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XP4 _cell.length_a 97.063 _cell.length_b 140.727 _cell.length_c 166.688 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XP4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D GLC 1 B 1 GLC A 704 MAL 4 n D GLC 2 B 2 GLC A 704 MAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 129 A CYS 148 1_555 A SG CYS 138 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 B SG CYS 45 L CYS 23 1_555 B SG CYS 111 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 B SG CYS 157 L CYS 135 1_555 B SG CYS 217 L CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 C SG CYS 41 H CYS 22 1_555 C SG CYS 115 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 C SG CYS 165 H CYS 146 1_555 C SG CYS 220 H CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 D O4 GLC . B GLC 1 1_555 D C1 GLC . B GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.415 sing metalc ? metalc1 A O GLY 23 A GLY 42 1_555 K NA NA . A NA 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc2 A O ALA 25 A ALA 44 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.601 ? metalc ? metalc3 A O VAL 26 A VAL 45 1_555 K NA NA . A NA 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc4 A OD1 ASN 30 A ASN 49 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? metalc ? metalc5 A O SER 260 A SER 320 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.91 ? metalc ? metalc6 A OG SER 260 A SER 320 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? metalc ? metalc7 A OD1 ASN 292 A ASN 352 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.131 ? metalc ? metalc8 A O LEU 357 A LEU 417 1_555 K NA NA . A NA 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc9 A OD1 ASP 360 A ASP 420 1_555 K NA NA . A NA 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc10 A OG SER 361 A SER 421 1_555 K NA NA . A NA 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? # _chem_comp.formula 'C8 H18 O3' _chem_comp.formula_weight 162.227 _chem_comp.id P4G _chem_comp.mon_nstd_flag . _chem_comp.name 1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 C7 P4G sing 383 n n C8 H81 P4G sing 384 n n C8 H82 P4G sing 385 n n C8 H83 P4G sing 386 n n C7 O4 P4G sing 387 n n C7 H71 P4G sing 388 n n C7 H72 P4G sing 389 n n O4 C6 P4G sing 390 n n C6 C5 P4G sing 391 n n C6 H61 P4G sing 392 n n C6 H62 P4G sing 393 n n C5 O3 P4G sing 394 n n C5 H51 P4G sing 395 n n C5 H52 P4G sing 396 n n O3 C4 P4G sing 397 n n C4 C3 P4G sing 398 n n C4 H41 P4G sing 399 n n C4 H42 P4G sing 400 n n C3 O2 P4G sing 401 n n C3 H31 P4G sing 402 n n C3 H32 P4G sing 403 n n O2 C2 P4G sing 404 n n C2 C1 P4G sing 405 n n C2 H21 P4G sing 406 n n C2 H22 P4G sing 407 n n C1 H11 P4G sing 408 n n C1 H12 P4G sing 409 n n C1 H13 P4G sing 410 n n # _atom_sites.entry_id 4XP4 _atom_sites.fract_transf_matrix[1][1] 0.010303 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007106 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005999 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 Y01 A 1 701 701 Y01 Y01 . F 6 P4G A 1 702 702 P4G P4G . G 6 P4G A 1 703 703 P4G P4G . H 7 CLR A 1 705 705 CLR CLR . I 8 COC A 1 706 706 COC COC . J 9 NA A 1 707 707 NA NA . K 9 NA A 1 708 708 NA NA . L 10 CL A 1 709 709 CL CL . M 11 HOH A 1 801 801 HOH HOH . M 11 HOH A 2 802 808 HOH HOH . M 11 HOH A 3 803 803 HOH HOH . M 11 HOH A 4 804 807 HOH HOH . M 11 HOH A 5 805 802 HOH HOH . M 11 HOH A 6 806 806 HOH HOH . M 11 HOH A 7 807 805 HOH HOH . M 11 HOH A 8 808 804 HOH HOH . N 11 HOH L 1 301 301 HOH HOH . N 11 HOH L 2 302 302 HOH HOH . O 11 HOH H 1 301 302 HOH HOH . O 11 HOH H 2 302 301 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 P4G . . . F 6 201.744 267.814 33.302 1 91.2 ? C8 P4G 702 A 1 HETATM 2 C C7 P4G . . . F 6 203.147 268.159 33.684 1 98.89 ? C7 P4G 702 A 1 HETATM 3 O O4 P4G . . . F 6 203.497 269.434 33.145 1 98.41 ? O4 P4G 702 A 1 HETATM 4 C C6 P4G . . . F 6 204.824 269.871 33.504 1 90.44 ? C6 P4G 702 A 1 HETATM 5 C C5 P4G . . . F 6 205.701 269.881 32.261 1 94.06 ? C5 P4G 702 A 1 HETATM 6 O O3 P4G . . . F 6 205.696 271.192 31.671 1 89.65 ? O3 P4G 702 A 1 HETATM 7 C C4 P4G . . . F 6 205.45 271.227 30.271 1 99.19 ? C4 P4G 702 A 1 HETATM 8 C C3 P4G . . . F 6 203.95 271.568 29.998 1 105.83 ? C3 P4G 702 A 1 HETATM 9 O O2 P4G . . . F 6 203.853 272.882 29.411 1 93.49 ? O2 P4G 702 A 1 HETATM 10 C C2 P4G . . . F 6 202.532 273.417 29.447 1 89.37 ? C2 P4G 702 A 1 HETATM 11 C C1 P4G . . . F 6 202.38 274.446 28.356 1 93.98 ? C1 P4G 702 A 1 HETATM 12 H H81 P4G . . . F 6 201.674 267.771 32.336 1 109.44 ? H81 P4G 702 A 1 HETATM 13 H H82 P4G . . . F 6 201.138 268.495 33.642 1 109.44 ? H82 P4G 702 A 1 HETATM 14 H H83 P4G . . . F 6 201.507 266.939 33.689 1 109.44 ? H83 P4G 702 A 1 HETATM 15 H H71 P4G . . . F 6 203.232 268.18 34.64 1 118.67 ? H71 P4G 702 A 1 HETATM 16 H H72 P4G . . . F 6 203.739 267.497 33.331 1 118.67 ? H72 P4G 702 A 1 HETATM 17 H H61 P4G . . . F 6 204.779 270.778 33.883 1 108.53 ? H61 P4G 702 A 1 HETATM 18 H H62 P4G . . . F 6 205.202 269.256 34.169 1 108.53 ? H62 P4G 702 A 1 HETATM 19 H H51 P4G . . . F 6 206.622 269.638 32.507 1 112.88 ? H51 P4G 702 A 1 HETATM 20 H H52 P4G . . . F 6 205.353 269.23 31.61 1 112.88 ? H52 P4G 702 A 1 HETATM 21 H H41 P4G . . . F 6 206.018 271.913 29.858 1 119.03 ? H41 P4G 702 A 1 HETATM 22 H H42 P4G . . . F 6 205.664 270.344 29.879 1 119.03 ? H42 P4G 702 A 1 HETATM 23 H H31 P4G . . . F 6 203.565 270.898 29.373 1 126.99 ? H31 P4G 702 A 1 HETATM 24 H H32 P4G . . . F 6 203.447 271.552 30.852 1 126.99 ? H32 P4G 702 A 1 HETATM 25 H H21 P4G . . . F 6 201.877 272.687 29.307 1 107.24 ? H21 P4G 702 A 1 HETATM 26 H H22 P4G . . . F 6 202.373 273.837 30.318 1 107.24 ? H22 P4G 702 A 1 HETATM 27 H H11 P4G . . . F 6 202.477 274.016 27.489 1 112.77 ? H11 P4G 702 A 1 HETATM 28 H H12 P4G . . . F 6 201.491 274.86 28.42 1 112.77 ? H12 P4G 702 A 1 HETATM 29 H H13 P4G . . . F 6 203.068 275.132 28.459 1 112.77 ? H13 P4G 702 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 29 #