data_4XP4 # _model_server_result.job_id uPtboMTEWIVLK8vU6PXbqg _model_server_result.datetime_utc '2024-11-21 13:55:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xp4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":706}' # _entry.id 4XP4 # _exptl.entry_id 4XP4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 303.353 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description COCAINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XP4 _cell.length_a 97.063 _cell.length_b 140.727 _cell.length_c 166.688 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XP4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D GLC 1 B 1 GLC A 704 MAL 4 n D GLC 2 B 2 GLC A 704 MAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 129 A CYS 148 1_555 A SG CYS 138 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 B SG CYS 45 L CYS 23 1_555 B SG CYS 111 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 B SG CYS 157 L CYS 135 1_555 B SG CYS 217 L CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 C SG CYS 41 H CYS 22 1_555 C SG CYS 115 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 C SG CYS 165 H CYS 146 1_555 C SG CYS 220 H CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 D O4 GLC . B GLC 1 1_555 D C1 GLC . B GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.415 sing metalc ? metalc1 A O GLY 23 A GLY 42 1_555 K NA NA . A NA 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc2 A O ALA 25 A ALA 44 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.601 ? metalc ? metalc3 A O VAL 26 A VAL 45 1_555 K NA NA . A NA 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc4 A OD1 ASN 30 A ASN 49 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? metalc ? metalc5 A O SER 260 A SER 320 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.91 ? metalc ? metalc6 A OG SER 260 A SER 320 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? metalc ? metalc7 A OD1 ASN 292 A ASN 352 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.131 ? metalc ? metalc8 A O LEU 357 A LEU 417 1_555 K NA NA . A NA 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc9 A OD1 ASP 360 A ASP 420 1_555 K NA NA . A NA 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc10 A OG SER 361 A SER 421 1_555 K NA NA . A NA 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? # _chem_comp.formula 'C17 H21 N O4' _chem_comp.formula_weight 303.353 _chem_comp.id COC _chem_comp.mon_nstd_flag . _chem_comp.name COCAINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O5 COC sing 147 n n C1 H2 COC sing 148 n n C1 H3 COC sing 149 n n C1 H4 COC sing 150 n n O5 C6 COC sing 151 n n C6 O7 COC doub 152 n n C6 C8 COC sing 153 n n C8 C10 COC sing 154 n n C8 C29 COC sing 155 n n C8 H9 COC sing 156 n n C10 N12 COC sing 157 n n C10 C18 COC sing 158 n n C10 H11 COC sing 159 n n N12 C14 COC sing 160 n n N12 C24 COC sing 161 n n C14 H15 COC sing 162 n n C14 H16 COC sing 163 n n C14 H17 COC sing 164 n n C18 C21 COC sing 165 n n C18 H19 COC sing 166 n n C18 H20 COC sing 167 n n C21 C24 COC sing 168 n n C21 H22 COC sing 169 n n C21 H23 COC sing 170 n n C24 C26 COC sing 171 n n C24 H25 COC sing 172 n n C26 C29 COC sing 173 n n C26 H27 COC sing 174 n n C26 H28 COC sing 175 n n C29 O1 COC sing 176 n n C29 H30 COC sing 177 n n O1 C2 COC sing 178 n n C2 O3 COC doub 179 n n C2 C4 COC sing 180 n n C4 C5 COC doub 181 n y C4 C13 COC sing 182 n y C5 C7 COC sing 183 n y C5 H6 COC sing 184 n n C7 C9 COC doub 185 n y C7 H8 COC sing 186 n n C9 C11 COC sing 187 n y C9 H10 COC sing 188 n n C11 C13 COC doub 189 n y C11 H12 COC sing 190 n n C13 H14 COC sing 191 n n # _atom_sites.entry_id 4XP4 _atom_sites.fract_transf_matrix[1][1] 0.010303 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007106 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005999 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 Y01 A 1 701 701 Y01 Y01 . F 6 P4G A 1 702 702 P4G P4G . G 6 P4G A 1 703 703 P4G P4G . H 7 CLR A 1 705 705 CLR CLR . I 8 COC A 1 706 706 COC COC . J 9 NA A 1 707 707 NA NA . K 9 NA A 1 708 708 NA NA . L 10 CL A 1 709 709 CL CL . M 11 HOH A 1 801 801 HOH HOH . M 11 HOH A 2 802 808 HOH HOH . M 11 HOH A 3 803 803 HOH HOH . M 11 HOH A 4 804 807 HOH HOH . M 11 HOH A 5 805 802 HOH HOH . M 11 HOH A 6 806 806 HOH HOH . M 11 HOH A 7 807 805 HOH HOH . M 11 HOH A 8 808 804 HOH HOH . N 11 HOH L 1 301 301 HOH HOH . N 11 HOH L 2 302 302 HOH HOH . O 11 HOH H 1 301 302 HOH HOH . O 11 HOH H 2 302 301 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 COC . . . I 8 203.95 280.422 26.146 1 64.86 ? C1 COC 706 A 1 HETATM 2 O O5 COC . . . I 8 203.85 280.95 27.49 1 68.59 ? O5 COC 706 A 1 HETATM 3 C C6 COC . . . I 8 202.574 281.585 27.753 1 71.7 ? C6 COC 706 A 1 HETATM 4 O O7 COC . . . I 8 201.64 281.385 26.988 1 72.09 ? O7 COC 706 A 1 HETATM 5 C C8 COC . . . I 8 202.41 282.481 28.927 1 63.24 ? C8 COC 706 A 1 HETATM 6 C C10 COC . . . I 8 201.189 282.115 29.67 1 66.99 ? C10 COC 706 A 1 HETATM 7 N N12 COC . . . I 8 200.083 282.425 29.037 1 66.2 ? N12 COC 706 A 1 HETATM 8 C C14 COC . . . I 8 198.957 281.742 29.677 1 62.13 ? C14 COC 706 A 1 HETATM 9 C C18 COC . . . I 8 201.1 283.028 30.933 1 63.48 ? C18 COC 706 A 1 HETATM 10 C C21 COC . . . I 8 200.204 284.106 30.504 1 65.17 ? C21 COC 706 A 1 HETATM 11 C C24 COC . . . I 8 199.859 283.722 29.043 1 68.09 ? C24 COC 706 A 1 HETATM 12 C C26 COC . . . I 8 200.785 284.492 28.126 1 62.32 ? C26 COC 706 A 1 HETATM 13 C C29 COC . . . I 8 202.325 284.057 28.338 1 65.24 ? C29 COC 706 A 1 HETATM 14 O O1 COC . . . I 8 202.908 284.09 27.216 1 70.3 ? O1 COC 706 A 1 HETATM 15 C C2 COC . . . I 8 204.33 284.513 27.255 1 64.18 ? C2 COC 706 A 1 HETATM 16 O O3 COC . . . I 8 204.949 284.489 28.293 1 65.78 ? O3 COC 706 A 1 HETATM 17 C C4 COC . . . I 8 204.994 284.968 25.983 1 67.49 ? C4 COC 706 A 1 HETATM 18 C C5 COC . . . I 8 206.349 285.22 25.955 1 60.08 ? C5 COC 706 A 1 HETATM 19 C C7 COC . . . I 8 206.927 285.629 24.784 1 65.08 ? C7 COC 706 A 1 HETATM 20 C C9 COC . . . I 8 206.157 285.787 23.638 1 56.02 ? C9 COC 706 A 1 HETATM 21 C C11 COC . . . I 8 204.817 285.531 23.671 1 58.6 ? C11 COC 706 A 1 HETATM 22 C C13 COC . . . I 8 204.231 285.119 24.845 1 67.28 ? C13 COC 706 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 430 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 22 #