data_4XP5 # _model_server_result.job_id E46zc8oukiwhc9AnwQkgOg _model_server_result.datetime_utc '2024-11-24 07:40:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xp5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":602}' # _entry.id 4XP5 # _exptl.entry_id 4XP5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 385.24 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'methyl (1R,2S,3S,5S)-3-(4-iodophenyl)-8-methyl-8-azabicyclo[3.2.1]octane-2-carboxylate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XP5 _cell.length_a 95.25 _cell.length_b 137.98 _cell.length_c 163.39 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XP5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D GLC 1 B 1 GLC A 1 MAL 4 n D GLC 2 B 2 GLC A 1 MAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 124 A CYS 148 1_555 A SG CYS 133 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 B SG CYS 23 L CYS 23 1_555 B SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 B SG CYS 135 L CYS 135 1_555 B SG CYS 195 L CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 C SG CYS 22 H CYS 22 1_555 C SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 C SG CYS 146 H CYS 146 1_555 C SG CYS 201 H CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 D O4 GLC . B GLC 1 1_555 D C1 GLC . B GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.411 sing metalc ? metalc1 A O GLY 18 A GLY 42 1_555 K NA NA . A NA 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc2 A O ALA 20 A ALA 44 1_555 I NA NA . A NA 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.819 ? metalc ? metalc3 A O VAL 21 A VAL 45 1_555 K NA NA . A NA 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc4 A OD1 ASN 25 A ASN 49 1_555 I NA NA . A NA 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc5 A O SER 255 A SER 320 1_555 I NA NA . A NA 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? metalc ? metalc6 A OG SER 255 A SER 320 1_555 I NA NA . A NA 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? metalc ? metalc7 A O LEU 352 A LEU 417 1_555 K NA NA . A NA 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc8 A OD1 ASP 355 A ASP 420 1_555 K NA NA . A NA 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc9 A OG SER 356 A SER 421 1_555 K NA NA . A NA 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? # _chem_comp.formula 'C16 H20 I N O2' _chem_comp.formula_weight 385.24 _chem_comp.id 42F _chem_comp.mon_nstd_flag . _chem_comp.name 'methyl (1R,2S,3S,5S)-3-(4-iodophenyl)-8-methyl-8-azabicyclo[3.2.1]octane-2-carboxylate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag I C11 42F sing 1 n n C12 C11 42F doub 2 n y C12 C13 42F sing 3 n y C11 C10 42F sing 4 n y C13 C8 42F doub 5 n y C10 C9 42F doub 6 n y O1 C14 42F sing 7 n n O1 C15 42F sing 8 n n O C14 42F doub 9 n n C8 C9 42F sing 10 n y C8 C6 42F sing 11 n n C14 C5 42F sing 12 n n C7 C6 42F sing 13 n n C7 C1 42F sing 14 n n C6 C5 42F sing 15 n n C5 C4 42F sing 16 n n C1 N 42F sing 17 n n C1 C2 42F sing 18 n n N C4 42F sing 19 n n N C 42F sing 20 n n C4 C3 42F sing 21 n n C2 C3 42F sing 22 n n C15 H1 42F sing 23 n n C15 H2 42F sing 24 n n C15 H3 42F sing 25 n n C5 H4 42F sing 26 n n C4 H5 42F sing 27 n n C3 H6 42F sing 28 n n C3 H7 42F sing 29 n n C2 H8 42F sing 30 n n C2 H9 42F sing 31 n n C H11 42F sing 32 n n C H12 42F sing 33 n n C H13 42F sing 34 n n C6 H14 42F sing 35 n n C7 H15 42F sing 36 n n C7 H16 42F sing 37 n n C1 H17 42F sing 38 n n C13 H18 42F sing 39 n n C12 H19 42F sing 40 n n C10 H20 42F sing 41 n n C9 H21 42F sing 42 n n # _atom_sites.entry_id 4XP5 _atom_sites.fract_transf_matrix[1][1] 0.010499 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007247 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00612 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 42F A 1 602 1 42F DUM . F 6 CLR A 1 603 2 CLR CLR . G 7 P4G A 1 604 1 P4G P4G . H 6 CLR A 1 605 1 CLR CLR . I 8 NA A 1 606 1 NA NA . J 9 CL A 1 607 1 CL CL . K 8 NA A 1 608 1 NA NA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O 42F . . . E 5 197.586 275.589 26.342 1 73.5 ? O 42F 602 A 1 HETATM 2 C C14 42F . . . E 5 198.689 275.957 26.745 1 72.85 ? C14 42F 602 A 1 HETATM 3 O O1 42F . . . E 5 199.87 275.603 26.17 1 71.58 ? O1 42F 602 A 1 HETATM 4 C C15 42F . . . E 5 200.343 274.392 26.769 1 68.04 ? C15 42F 602 A 1 HETATM 5 C C5 42F . . . E 5 198.819 276.829 27.996 1 69.45 ? C5 42F 602 A 1 HETATM 6 C C4 42F . . . E 5 197.73 276.428 28.983 1 65.01 ? C4 42F 602 A 1 HETATM 7 C C3 42F . . . E 5 197.677 277.417 30.141 1 61.48 ? C3 42F 602 A 1 HETATM 8 C C2 42F . . . E 5 196.699 278.503 29.656 1 58.32 ? C2 42F 602 A 1 HETATM 9 N N 42F . . . E 5 196.379 276.575 28.419 1 63.65 ? N 42F 602 A 1 HETATM 10 C C 42F . . . E 5 195.386 276.15 29.413 1 66.61 ? C 42F 602 A 1 HETATM 11 C C6 42F . . . E 5 198.654 278.305 27.675 1 68.41 ? C6 42F 602 A 1 HETATM 12 C C7 42F . . . E 5 197.237 278.555 27.219 1 67.93 ? C7 42F 602 A 1 HETATM 13 C C1 42F . . . E 5 196.278 278.031 28.268 1 64.09 ? C1 42F 602 A 1 HETATM 14 C C8 42F . . . E 5 199.539 278.742 26.687 1 64.39 ? C8 42F 602 A 1 HETATM 15 C C13 42F . . . E 5 199.082 278.893 25.383 1 70.12 ? C13 42F 602 A 1 HETATM 16 C C12 42F . . . E 5 199.943 279.337 24.387 1 69.62 ? C12 42F 602 A 1 HETATM 17 C C11 42F . . . E 5 201.264 279.639 24.691 1 68.48 ? C11 42F 602 A 1 HETATM 18 I I 42F . . . E 5 202.536 280.311 23.165 1 106.17 ? I 42F 602 A 1 HETATM 19 C C10 42F . . . E 5 201.722 279.494 25.998 1 67.17 ? C10 42F 602 A 1 HETATM 20 C C9 42F . . . E 5 200.859 279.049 26.997 1 61.3 ? C9 42F 602 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 20 #