data_4XP5 # _model_server_result.job_id VfQw5St-dZh4U4i61h3D_Q _model_server_result.datetime_utc '2024-11-13 03:08:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xp5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":603}' # _entry.id 4XP5 # _exptl.entry_id 4XP5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.654 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XP5 _cell.length_a 95.25 _cell.length_b 137.98 _cell.length_c 163.39 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XP5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 H N N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D GLC 1 B 1 GLC A 1 MAL 4 n D GLC 2 B 2 GLC A 1 MAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 124 A CYS 148 1_555 A SG CYS 133 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 B SG CYS 23 L CYS 23 1_555 B SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 B SG CYS 135 L CYS 135 1_555 B SG CYS 195 L CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 C SG CYS 22 H CYS 22 1_555 C SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 C SG CYS 146 H CYS 146 1_555 C SG CYS 201 H CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 D O4 GLC . B GLC 1 1_555 D C1 GLC . B GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.411 sing metalc ? metalc1 A O GLY 18 A GLY 42 1_555 K NA NA . A NA 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc2 A O ALA 20 A ALA 44 1_555 I NA NA . A NA 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.819 ? metalc ? metalc3 A O VAL 21 A VAL 45 1_555 K NA NA . A NA 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc4 A OD1 ASN 25 A ASN 49 1_555 I NA NA . A NA 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc5 A O SER 255 A SER 320 1_555 I NA NA . A NA 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? metalc ? metalc6 A OG SER 255 A SER 320 1_555 I NA NA . A NA 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? metalc ? metalc7 A O LEU 352 A LEU 417 1_555 K NA NA . A NA 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc8 A OD1 ASP 355 A ASP 420 1_555 K NA NA . A NA 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc9 A OG SER 356 A SER 421 1_555 K NA NA . A NA 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 112 n n C1 C10 CLR sing 113 n n C1 H11 CLR sing 114 n n C1 H12 CLR sing 115 n n C2 C3 CLR sing 116 n n C2 H21 CLR sing 117 n n C2 H22 CLR sing 118 n n C3 C4 CLR sing 119 n n C3 O1 CLR sing 120 n n C3 H3 CLR sing 121 n n C4 C5 CLR sing 122 n n C4 H41 CLR sing 123 n n C4 H42 CLR sing 124 n n C5 C6 CLR doub 125 n n C5 C10 CLR sing 126 n n C6 C7 CLR sing 127 n n C6 H6 CLR sing 128 n n C7 C8 CLR sing 129 n n C7 H71 CLR sing 130 n n C7 H72 CLR sing 131 n n C8 C9 CLR sing 132 n n C8 C14 CLR sing 133 n n C8 H8 CLR sing 134 n n C9 C10 CLR sing 135 n n C9 C11 CLR sing 136 n n C9 H9 CLR sing 137 n n C10 C19 CLR sing 138 n n C11 C12 CLR sing 139 n n C11 H111 CLR sing 140 n n C11 H112 CLR sing 141 n n C12 C13 CLR sing 142 n n C12 H121 CLR sing 143 n n C12 H122 CLR sing 144 n n C13 C14 CLR sing 145 n n C13 C17 CLR sing 146 n n C13 C18 CLR sing 147 n n C14 C15 CLR sing 148 n n C14 H14 CLR sing 149 n n C15 C16 CLR sing 150 n n C15 H151 CLR sing 151 n n C15 H152 CLR sing 152 n n C16 C17 CLR sing 153 n n C16 H161 CLR sing 154 n n C16 H162 CLR sing 155 n n C17 C20 CLR sing 156 n n C17 H17 CLR sing 157 n n C18 H181 CLR sing 158 n n C18 H182 CLR sing 159 n n C18 H183 CLR sing 160 n n C19 H191 CLR sing 161 n n C19 H192 CLR sing 162 n n C19 H193 CLR sing 163 n n C20 C21 CLR sing 164 n n C20 C22 CLR sing 165 n n C20 H20 CLR sing 166 n n C21 H211 CLR sing 167 n n C21 H212 CLR sing 168 n n C21 H213 CLR sing 169 n n C22 C23 CLR sing 170 n n C22 H221 CLR sing 171 n n C22 H222 CLR sing 172 n n C23 C24 CLR sing 173 n n C23 H231 CLR sing 174 n n C23 H232 CLR sing 175 n n C24 C25 CLR sing 176 n n C24 H241 CLR sing 177 n n C24 H242 CLR sing 178 n n C25 C26 CLR sing 179 n n C25 C27 CLR sing 180 n n C25 H25 CLR sing 181 n n C26 H261 CLR sing 182 n n C26 H262 CLR sing 183 n n C26 H263 CLR sing 184 n n C27 H271 CLR sing 185 n n C27 H272 CLR sing 186 n n C27 H273 CLR sing 187 n n O1 H1 CLR sing 188 n n # _atom_sites.entry_id 4XP5 _atom_sites.fract_transf_matrix[1][1] 0.010499 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007247 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00612 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 42F A 1 602 1 42F DUM . F 6 CLR A 1 603 2 CLR CLR . G 7 P4G A 1 604 1 P4G P4G . H 6 CLR A 1 605 1 CLR CLR . I 8 NA A 1 606 1 NA NA . J 9 CL A 1 607 1 CL CL . K 8 NA A 1 608 1 NA NA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . F 6 189.81 280.499 49.12 1 76.53 ? C1 CLR 603 A 1 HETATM 2 C C2 CLR . . . F 6 190.716 280.824 50.297 1 80.47 ? C2 CLR 603 A 1 HETATM 3 C C3 CLR . . . F 6 190.062 280.328 51.575 1 71.63 ? C3 CLR 603 A 1 HETATM 4 C C4 CLR . . . F 6 189.943 278.809 51.535 1 76.91 ? C4 CLR 603 A 1 HETATM 5 C C5 CLR . . . F 6 189.493 278.262 50.193 1 83.07 ? C5 CLR 603 A 1 HETATM 6 C C6 CLR . . . F 6 188.908 277.053 50.18 1 83.47 ? C6 CLR 603 A 1 HETATM 7 C C7 CLR . . . F 6 187.86 276.685 49.159 1 84.26 ? C7 CLR 603 A 1 HETATM 8 C C8 CLR . . . F 6 188.263 277.234 47.8 1 80.81 ? C8 CLR 603 A 1 HETATM 9 C C9 CLR . . . F 6 188.59 278.72 47.91 1 76.28 ? C9 CLR 603 A 1 HETATM 10 C C10 CLR . . . F 6 189.73 278.996 48.888 1 79.49 ? C10 CLR 603 A 1 HETATM 11 C C11 CLR . . . F 6 188.87 279.35 46.543 1 68.88 ? C11 CLR 603 A 1 HETATM 12 C C12 CLR . . . F 6 187.733 279.107 45.55 1 72.85 ? C12 CLR 603 A 1 HETATM 13 C C13 CLR . . . F 6 187.505 277.61 45.436 1 77.14 ? C13 CLR 603 A 1 HETATM 14 C C14 CLR . . . F 6 187.132 277.068 46.796 1 79.05 ? C14 CLR 603 A 1 HETATM 15 C C15 CLR . . . F 6 186.621 275.66 46.52 1 73.53 ? C15 CLR 603 A 1 HETATM 16 C C16 CLR . . . F 6 185.977 275.765 45.135 1 63.79 ? C16 CLR 603 A 1 HETATM 17 C C17 CLR . . . F 6 186.322 277.155 44.597 1 75 ? C17 CLR 603 A 1 HETATM 18 C C18 CLR . . . F 6 188.777 276.931 44.94 1 70.87 ? C18 CLR 603 A 1 HETATM 19 C C19 CLR . . . F 6 191.043 278.499 48.295 1 76.74 ? C19 CLR 603 A 1 HETATM 20 C C20 CLR . . . F 6 186.563 277.162 43.091 1 74.37 ? C20 CLR 603 A 1 HETATM 21 C C21 CLR . . . F 6 186.984 278.539 42.592 1 63.17 ? C21 CLR 603 A 1 HETATM 22 C C22 CLR . . . F 6 185.309 276.69 42.364 1 73.08 ? C22 CLR 603 A 1 HETATM 23 C C23 CLR . . . F 6 185.334 277.089 40.893 1 72.23 ? C23 CLR 603 A 1 HETATM 24 C C24 CLR . . . F 6 183.966 276.915 40.239 1 66.45 ? C24 CLR 603 A 1 HETATM 25 C C25 CLR . . . F 6 183.772 275.508 39.682 1 57.89 ? C25 CLR 603 A 1 HETATM 26 C C26 CLR . . . F 6 183.78 274.461 40.789 1 54.86 ? C26 CLR 603 A 1 HETATM 27 C C27 CLR . . . F 6 182.491 275.42 38.86 1 49.1 ? C27 CLR 603 A 1 HETATM 28 O O1 CLR . . . F 6 190.851 280.721 52.706 1 52.78 ? O1 CLR 603 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #