data_4XP5 # _model_server_result.job_id 3OEnwWo7MyG6iRCOF1FUXA _model_server_result.datetime_utc '2024-11-13 02:54:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xp5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":604}' # _entry.id 4XP5 # _exptl.entry_id 4XP5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 162.227 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XP5 _cell.length_a 95.25 _cell.length_b 137.98 _cell.length_c 163.39 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XP5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D GLC 1 B 1 GLC A 1 MAL 4 n D GLC 2 B 2 GLC A 1 MAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 124 A CYS 148 1_555 A SG CYS 133 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 B SG CYS 23 L CYS 23 1_555 B SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 B SG CYS 135 L CYS 135 1_555 B SG CYS 195 L CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 C SG CYS 22 H CYS 22 1_555 C SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 C SG CYS 146 H CYS 146 1_555 C SG CYS 201 H CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 D O4 GLC . B GLC 1 1_555 D C1 GLC . B GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.411 sing metalc ? metalc1 A O GLY 18 A GLY 42 1_555 K NA NA . A NA 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc2 A O ALA 20 A ALA 44 1_555 I NA NA . A NA 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.819 ? metalc ? metalc3 A O VAL 21 A VAL 45 1_555 K NA NA . A NA 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc4 A OD1 ASN 25 A ASN 49 1_555 I NA NA . A NA 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc5 A O SER 255 A SER 320 1_555 I NA NA . A NA 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? metalc ? metalc6 A OG SER 255 A SER 320 1_555 I NA NA . A NA 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? metalc ? metalc7 A O LEU 352 A LEU 417 1_555 K NA NA . A NA 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc8 A OD1 ASP 355 A ASP 420 1_555 K NA NA . A NA 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc9 A OG SER 356 A SER 421 1_555 K NA NA . A NA 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? # _chem_comp.formula 'C8 H18 O3' _chem_comp.formula_weight 162.227 _chem_comp.id P4G _chem_comp.mon_nstd_flag . _chem_comp.name 1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 C7 P4G sing 378 n n C8 H81 P4G sing 379 n n C8 H82 P4G sing 380 n n C8 H83 P4G sing 381 n n C7 O4 P4G sing 382 n n C7 H71 P4G sing 383 n n C7 H72 P4G sing 384 n n O4 C6 P4G sing 385 n n C6 C5 P4G sing 386 n n C6 H61 P4G sing 387 n n C6 H62 P4G sing 388 n n C5 O3 P4G sing 389 n n C5 H51 P4G sing 390 n n C5 H52 P4G sing 391 n n O3 C4 P4G sing 392 n n C4 C3 P4G sing 393 n n C4 H41 P4G sing 394 n n C4 H42 P4G sing 395 n n C3 O2 P4G sing 396 n n C3 H31 P4G sing 397 n n C3 H32 P4G sing 398 n n O2 C2 P4G sing 399 n n C2 C1 P4G sing 400 n n C2 H21 P4G sing 401 n n C2 H22 P4G sing 402 n n C1 H11 P4G sing 403 n n C1 H12 P4G sing 404 n n C1 H13 P4G sing 405 n n # _atom_sites.entry_id 4XP5 _atom_sites.fract_transf_matrix[1][1] 0.010499 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007247 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00612 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 42F A 1 602 1 42F DUM . F 6 CLR A 1 603 2 CLR CLR . G 7 P4G A 1 604 1 P4G P4G . H 6 CLR A 1 605 1 CLR CLR . I 8 NA A 1 606 1 NA NA . J 9 CL A 1 607 1 CL CL . K 8 NA A 1 608 1 NA NA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 P4G . . . G 7 196.843 267.227 29.074 1 105.19 ? C8 P4G 604 A 1 HETATM 2 C C7 P4G . . . G 7 198.09 267.579 28.295 1 109.33 ? C7 P4G 604 A 1 HETATM 3 O O4 P4G . . . G 7 199.166 266.84 28.817 1 111.17 ? O4 P4G 604 A 1 HETATM 4 C C6 P4G . . . G 7 200.399 267.049 28.171 1 108 ? C6 P4G 604 A 1 HETATM 5 C C5 P4G . . . G 7 201.379 266.026 28.702 1 112.04 ? C5 P4G 604 A 1 HETATM 6 O O3 P4G . . . G 7 200.953 265.614 29.982 1 112.75 ? O3 P4G 604 A 1 HETATM 7 C C4 P4G . . . G 7 201.817 264.7 30.614 1 99.25 ? C4 P4G 604 A 1 HETATM 8 C C3 P4G . . . G 7 201.337 264.442 32.027 1 97.08 ? C3 P4G 604 A 1 HETATM 9 O O2 P4G . . . G 7 200.059 263.848 32.013 1 106.96 ? O2 P4G 604 A 1 HETATM 10 C C2 P4G . . . G 7 199.674 263.302 33.255 1 95.62 ? C2 P4G 604 A 1 HETATM 11 C C1 P4G . . . G 7 198.429 262.457 33.081 1 91.66 ? C1 P4G 604 A 1 HETATM 12 H H81 P4G . . . G 7 196.639 266.28 28.953 1 126.23 ? H81 P4G 604 A 1 HETATM 13 H H82 P4G . . . G 7 196.095 267.765 28.752 1 126.23 ? H82 P4G 604 A 1 HETATM 14 H H83 P4G . . . G 7 196.989 267.409 30.022 1 126.23 ? H83 P4G 604 A 1 HETATM 15 H H71 P4G . . . G 7 197.963 267.353 27.354 1 131.2 ? H71 P4G 604 A 1 HETATM 16 H H72 P4G . . . G 7 198.275 268.533 28.381 1 131.2 ? H72 P4G 604 A 1 HETATM 17 H H61 P4G . . . G 7 200.721 267.951 28.359 1 129.6 ? H61 P4G 604 A 1 HETATM 18 H H62 P4G . . . G 7 200.283 266.924 27.21 1 129.6 ? H62 P4G 604 A 1 HETATM 19 H H51 P4G . . . G 7 201.398 265.254 28.105 1 134.45 ? H51 P4G 604 A 1 HETATM 20 H H52 P4G . . . G 7 202.27 266.419 28.758 1 134.45 ? H52 P4G 604 A 1 HETATM 21 H H41 P4G . . . G 7 202.713 265.086 30.646 1 119.1 ? H41 P4G 604 A 1 HETATM 22 H H42 P4G . . . G 7 201.836 263.863 30.112 1 119.1 ? H42 P4G 604 A 1 HETATM 23 H H31 P4G . . . G 7 201.291 265.286 32.514 1 116.49 ? H31 P4G 604 A 1 HETATM 24 H H32 P4G . . . G 7 201.962 263.849 32.484 1 116.49 ? H32 P4G 604 A 1 HETATM 25 H H21 P4G . . . G 7 200.396 262.743 33.6 1 114.74 ? H21 P4G 604 A 1 HETATM 26 H H22 P4G . . . G 7 199.493 264.024 33.886 1 114.74 ? H22 P4G 604 A 1 HETATM 27 H H11 P4G . . . G 7 198.6 261.759 32.42 1 110 ? H11 P4G 604 A 1 HETATM 28 H H12 P4G . . . G 7 197.693 263.021 32.776 1 110 ? H12 P4G 604 A 1 HETATM 29 H H13 P4G . . . G 7 198.193 262.046 33.934 1 110 ? H13 P4G 604 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 29 #