data_4XP6 # _model_server_result.job_id myOOnj1Hhg9SrC13X0_opA _model_server_result.datetime_utc '2024-11-24 06:48:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xp6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":601}' # _entry.id 4XP6 # _exptl.entry_id 4XP6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 149.233 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S)-N-methyl-1-phenylpropan-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XP6 _cell.length_a 97.04 _cell.length_b 141.37 _cell.length_c 165.68 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XP6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D GLC 1 B 1 GLC X 1 MAL 4 n D GLC 2 B 2 GLC X 1 MAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 124 A CYS 148 1_555 A SG CYS 133 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 B SG CYS 23 L CYS 23 1_555 B SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 B SG CYS 135 L CYS 135 1_555 B SG CYS 195 L CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 C SG CYS 22 H CYS 22 1_555 C SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 C SG CYS 146 H CYS 146 1_555 C SG CYS 201 H CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A ND2 ASN 117 A ASN 141 1_555 I C1 NAG . A NAG 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale2 D O4 GLC . B GLC 1 1_555 D C1 GLC . B GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.413 sing metalc ? metalc1 A O GLY 18 A GLY 42 1_555 G NA NA . A NA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc2 A O ALA 20 A ALA 44 1_555 F NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc3 A O VAL 21 A VAL 45 1_555 G NA NA . A NA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc4 A OD1 ASN 25 A ASN 49 1_555 F NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc5 A O SER 255 A SER 320 1_555 F NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? metalc ? metalc6 A OG SER 255 A SER 320 1_555 F NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc7 A OD1 ASN 287 A ASN 352 1_555 F NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.737 ? metalc ? metalc8 A O LEU 352 A LEU 417 1_555 G NA NA . A NA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc9 A OD1 ASP 355 A ASP 420 1_555 G NA NA . A NA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc10 A OG SER 356 A SER 421 1_555 G NA NA . A NA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc11 F NA NA . A NA 603 1_555 L O HOH . A HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.881 ? # _chem_comp.formula 'C10 H15 N' _chem_comp.formula_weight 149.233 _chem_comp.id B40 _chem_comp.mon_nstd_flag . _chem_comp.name (2S)-N-methyl-1-phenylpropan-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Methamphetamine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CM B40 sing 70 n n N CA B40 sing 71 n n N HN B40 sing 72 n n C CA B40 sing 73 n n CA CB B40 sing 74 n n CA HA B40 sing 75 n n C H B40 sing 76 n n C HB B40 sing 77 n n C HC B40 sing 78 n n CB CG B40 sing 79 n n CB HBA B40 sing 80 n n CB HBB B40 sing 81 n n CD2 CG B40 doub 82 n y CG CD1 B40 sing 83 n y CD1 CE1 B40 doub 84 n y CD1 HD1 B40 sing 85 n n CD2 CE2 B40 sing 86 n y CD2 HD2 B40 sing 87 n n CZ CE1 B40 sing 88 n y CE1 HE1 B40 sing 89 n n CE2 CZ B40 doub 90 n y CE2 HE2 B40 sing 91 n n CZ HZ B40 sing 92 n n CM HM B40 sing 93 n n CM HMA B40 sing 94 n n CM HMB B40 sing 95 n n # _atom_sites.entry_id 4XP6 _atom_sites.fract_transf_matrix[1][1] 0.010305 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007074 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006036 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 B40 A 1 601 1 B40 B40 . F 6 NA A 1 603 1 NA NA . G 6 NA A 1 604 2 NA NA . H 7 CL A 1 605 1 CL CL . I 8 NAG A 1 606 1 NAG NAG . J 9 CLR A 1 607 1 CLR CLR . K 10 Y01 A 1 608 1 Y01 CHS . L 11 HOH A 1 701 18 HOH HOH . L 11 HOH A 2 702 16 HOH HOH . L 11 HOH A 3 703 1 HOH HOH . L 11 HOH A 4 704 17 HOH HOH . L 11 HOH A 5 705 15 HOH HOH . L 11 HOH A 6 706 19 HOH HOH . L 11 HOH A 7 707 2 HOH HOH . L 11 HOH A 8 708 14 HOH HOH . L 11 HOH A 9 709 7 HOH HOH . L 11 HOH A 10 710 3 HOH HOH . L 11 HOH A 11 711 5 HOH HOH . L 11 HOH A 12 712 13 HOH HOH . M 11 HOH L 1 301 20 HOH HOH . M 11 HOH L 2 302 6 HOH HOH . M 11 HOH L 3 303 10 HOH HOH . M 11 HOH L 4 304 4 HOH HOH . M 11 HOH L 5 305 22 HOH HOH . N 11 HOH H 1 301 8 HOH HOH . N 11 HOH H 2 302 9 HOH HOH . N 11 HOH H 3 303 11 HOH HOH . N 11 HOH H 4 304 21 HOH HOH . N 11 HOH H 5 305 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N B40 . . . E 5 -152.01 -142.47 195.005 1 92.81 ? N B40 601 A 1 HETATM 2 C CA B40 . . . E 5 -153.321 -142.637 194.351 1 100.73 ? CA B40 601 A 1 HETATM 3 C C B40 . . . E 5 -153.882 -141.266 193.993 1 106.01 ? C B40 601 A 1 HETATM 4 C CB B40 . . . E 5 -153.16 -143.502 193.106 1 101.53 ? CB B40 601 A 1 HETATM 5 C CG B40 . . . E 5 -154.507 -144.03 192.668 1 106.24 ? CG B40 601 A 1 HETATM 6 C CD1 B40 . . . E 5 -154.661 -144.562 191.393 1 95.8 ? CD1 B40 601 A 1 HETATM 7 C CD2 B40 . . . E 5 -155.589 -143.993 193.541 1 107.41 ? CD2 B40 601 A 1 HETATM 8 C CE1 B40 . . . E 5 -155.899 -145.05 190.988 1 93.36 ? CE1 B40 601 A 1 HETATM 9 C CE2 B40 . . . E 5 -156.826 -144.481 193.136 1 101.1 ? CE2 B40 601 A 1 HETATM 10 C CZ B40 . . . E 5 -156.981 -145.01 191.859 1 95.72 ? CZ B40 601 A 1 HETATM 11 C CM B40 . . . E 5 -151.477 -143.79 195.376 1 86.92 ? CM B40 601 A 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 824 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 11 #