data_4XP6 # _model_server_result.job_id ey2PWLtHw4FIlU4aa9GJYg _model_server_result.datetime_utc '2024-11-24 06:29:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xp6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":608}' # _entry.id 4XP6 # _exptl.entry_id 4XP6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 486.726 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XP6 _cell.length_a 97.04 _cell.length_b 141.37 _cell.length_c 165.68 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XP6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 10 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D GLC 1 B 1 GLC X 1 MAL 4 n D GLC 2 B 2 GLC X 1 MAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 124 A CYS 148 1_555 A SG CYS 133 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 B SG CYS 23 L CYS 23 1_555 B SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 B SG CYS 135 L CYS 135 1_555 B SG CYS 195 L CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 C SG CYS 22 H CYS 22 1_555 C SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 C SG CYS 146 H CYS 146 1_555 C SG CYS 201 H CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A ND2 ASN 117 A ASN 141 1_555 I C1 NAG . A NAG 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale2 D O4 GLC . B GLC 1 1_555 D C1 GLC . B GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.413 sing metalc ? metalc1 A O GLY 18 A GLY 42 1_555 G NA NA . A NA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc2 A O ALA 20 A ALA 44 1_555 F NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc3 A O VAL 21 A VAL 45 1_555 G NA NA . A NA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc4 A OD1 ASN 25 A ASN 49 1_555 F NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc5 A O SER 255 A SER 320 1_555 F NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? metalc ? metalc6 A OG SER 255 A SER 320 1_555 F NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc7 A OD1 ASN 287 A ASN 352 1_555 F NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.737 ? metalc ? metalc8 A O LEU 352 A LEU 417 1_555 G NA NA . A NA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc9 A OD1 ASP 355 A ASP 420 1_555 G NA NA . A NA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc10 A OG SER 356 A SER 421 1_555 G NA NA . A NA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc11 F NA NA . A NA 603 1_555 L O HOH . A HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.881 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 533 n n CBA CAB Y01 sing 534 n n CBA CAN Y01 sing 535 n n CAN CAJ Y01 sing 536 n n CAJ CAO Y01 sing 537 n n CAO CBB Y01 sing 538 n n CBB CAC Y01 sing 539 n n CBB CBE Y01 sing 540 n n CBE CAP Y01 sing 541 n n CBE CBI Y01 sing 542 n n CAP CAQ Y01 sing 543 n n CAQ CBG Y01 sing 544 n n CBG CBI Y01 sing 545 n n CBG CBD Y01 sing 546 n n CBI CAE Y01 sing 547 n n CBI CAU Y01 sing 548 n n CAU CAS Y01 sing 549 n n CAS CBF Y01 sing 550 n n CBF CBD Y01 sing 551 n n CBF CBH Y01 sing 552 n n CBD CAK Y01 sing 553 n n CAK CAI Y01 sing 554 n n CAI CAZ Y01 doub 555 n n CAZ CAV Y01 sing 556 n n CAZ CBH Y01 sing 557 n n CAV CBC Y01 sing 558 n n CBH CAD Y01 sing 559 n n CBH CAT Y01 sing 560 n n CAT CAR Y01 sing 561 n n CAR CBC Y01 sing 562 n n CBC OAW Y01 sing 563 n n OAW CAY Y01 sing 564 n n CAY OAG Y01 doub 565 n n CAY CAM Y01 sing 566 n n CAM CAL Y01 sing 567 n n CAL CAX Y01 sing 568 n n CAX OAH Y01 sing 569 n n CAX OAF Y01 doub 570 n n CAA HAA1 Y01 sing 571 n n CAA HAA2 Y01 sing 572 n n CAA HAA3 Y01 sing 573 n n CBA HBA Y01 sing 574 n n CAB HAB1 Y01 sing 575 n n CAB HAB2 Y01 sing 576 n n CAB HAB3 Y01 sing 577 n n CAN HAN1 Y01 sing 578 n n CAN HAN2 Y01 sing 579 n n CAJ HAJ1 Y01 sing 580 n n CAJ HAJ2 Y01 sing 581 n n CAO HAO1 Y01 sing 582 n n CAO HAO2 Y01 sing 583 n n CBB HBB Y01 sing 584 n n CAC HAC1 Y01 sing 585 n n CAC HAC2 Y01 sing 586 n n CAC HAC3 Y01 sing 587 n n CBE HBE Y01 sing 588 n n CAP HAP1 Y01 sing 589 n n CAP HAP2 Y01 sing 590 n n CAQ HAQ1 Y01 sing 591 n n CAQ HAQ2 Y01 sing 592 n n CBG HBG Y01 sing 593 n n CBD HBD Y01 sing 594 n n CAE HAE1 Y01 sing 595 n n CAE HAE2 Y01 sing 596 n n CAE HAE3 Y01 sing 597 n n CAU HAU1 Y01 sing 598 n n CAU HAU2 Y01 sing 599 n n CAS HAS1 Y01 sing 600 n n CAS HAS2 Y01 sing 601 n n CBF HBF Y01 sing 602 n n CAK HAK1 Y01 sing 603 n n CAK HAK2 Y01 sing 604 n n CAI HAI Y01 sing 605 n n CAV HAV1 Y01 sing 606 n n CAV HAV2 Y01 sing 607 n n CBC HBC Y01 sing 608 n n CAD HAD1 Y01 sing 609 n n CAD HAD2 Y01 sing 610 n n CAD HAD3 Y01 sing 611 n n CAT HAT1 Y01 sing 612 n n CAT HAT2 Y01 sing 613 n n CAR HAR1 Y01 sing 614 n n CAR HAR2 Y01 sing 615 n n CAM HAM1 Y01 sing 616 n n CAM HAM2 Y01 sing 617 n n CAL HAL1 Y01 sing 618 n n CAL HAL2 Y01 sing 619 n n OAH HAH Y01 sing 620 n n # _atom_sites.entry_id 4XP6 _atom_sites.fract_transf_matrix[1][1] 0.010305 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007074 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006036 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 B40 A 1 601 1 B40 B40 . F 6 NA A 1 603 1 NA NA . G 6 NA A 1 604 2 NA NA . H 7 CL A 1 605 1 CL CL . I 8 NAG A 1 606 1 NAG NAG . J 9 CLR A 1 607 1 CLR CLR . K 10 Y01 A 1 608 1 Y01 CHS . L 11 HOH A 1 701 18 HOH HOH . L 11 HOH A 2 702 16 HOH HOH . L 11 HOH A 3 703 1 HOH HOH . L 11 HOH A 4 704 17 HOH HOH . L 11 HOH A 5 705 15 HOH HOH . L 11 HOH A 6 706 19 HOH HOH . L 11 HOH A 7 707 2 HOH HOH . L 11 HOH A 8 708 14 HOH HOH . L 11 HOH A 9 709 7 HOH HOH . L 11 HOH A 10 710 3 HOH HOH . L 11 HOH A 11 711 5 HOH HOH . L 11 HOH A 12 712 13 HOH HOH . M 11 HOH L 1 301 20 HOH HOH . M 11 HOH L 2 302 6 HOH HOH . M 11 HOH L 3 303 10 HOH HOH . M 11 HOH L 4 304 4 HOH HOH . M 11 HOH L 5 305 22 HOH HOH . N 11 HOH H 1 301 8 HOH HOH . N 11 HOH H 2 302 9 HOH HOH . N 11 HOH H 3 303 11 HOH HOH . N 11 HOH H 4 304 21 HOH HOH . N 11 HOH H 5 305 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . K 10 -137.983 -139.753 204.905 1 98.94 ? CAA Y01 608 A 1 HETATM 2 C CBA Y01 . . . K 10 -137.697 -141.246 204.991 1 93.87 ? CBA Y01 608 A 1 HETATM 3 C CAB Y01 . . . K 10 -136.207 -141.527 204.697 1 87.55 ? CAB Y01 608 A 1 HETATM 4 C CAN Y01 . . . K 10 -138.06 -141.726 206.391 1 92.09 ? CAN Y01 608 A 1 HETATM 5 C CAJ Y01 . . . K 10 -139.587 -141.604 206.634 1 90.29 ? CAJ Y01 608 A 1 HETATM 6 C CAO Y01 . . . K 10 -139.883 -141.285 208.128 1 96.55 ? CAO Y01 608 A 1 HETATM 7 C CBB Y01 . . . K 10 -140.824 -142.405 208.77 1 100.69 ? CBB Y01 608 A 1 HETATM 8 C CAC Y01 . . . K 10 -140.496 -143.754 208.108 1 87 ? CAC Y01 608 A 1 HETATM 9 C CBE Y01 . . . K 10 -140.515 -142.471 210.074 1 98.68 ? CBE Y01 608 A 1 HETATM 10 C CAP Y01 . . . K 10 -140.235 -140.945 210.621 1 98.15 ? CAP Y01 608 A 1 HETATM 11 C CAQ Y01 . . . K 10 -141.169 -140.782 211.849 1 93.14 ? CAQ Y01 608 A 1 HETATM 12 C CBG Y01 . . . K 10 -141.569 -142.258 212.258 1 100.3 ? CBG Y01 608 A 1 HETATM 13 C CBI Y01 . . . K 10 -141.806 -142.934 210.932 1 96.34 ? CBI Y01 608 A 1 HETATM 14 C CAE Y01 . . . K 10 -142.941 -142.182 210.336 1 93.51 ? CAE Y01 608 A 1 HETATM 15 C CAU Y01 . . . K 10 -142.212 -144.269 211.017 1 94.15 ? CAU Y01 608 A 1 HETATM 16 C CAS Y01 . . . K 10 -143.434 -144.452 212.083 1 92.93 ? CAS Y01 608 A 1 HETATM 17 C CBF Y01 . . . K 10 -142.994 -143.927 213.413 1 100.48 ? CBF Y01 608 A 1 HETATM 18 C CBD Y01 . . . K 10 -142.681 -142.494 213.284 1 101.32 ? CBD Y01 608 A 1 HETATM 19 C CAK Y01 . . . K 10 -142.187 -141.845 214.668 1 106.74 ? CAK Y01 608 A 1 HETATM 20 C CAI Y01 . . . K 10 -143.146 -142.103 215.76 1 114.27 ? CAI Y01 608 A 1 HETATM 21 C CAZ Y01 . . . K 10 -143.855 -143.634 215.815 1 111.6 ? CAZ Y01 608 A 1 HETATM 22 C CAV Y01 . . . K 10 -144.761 -143.907 216.96 1 108.28 ? CAV Y01 608 A 1 HETATM 23 C CBH Y01 . . . K 10 -144.172 -144.217 214.561 1 106.34 ? CBH Y01 608 A 1 HETATM 24 C CAD Y01 . . . K 10 -145.486 -143.606 214.051 1 96.91 ? CAD Y01 608 A 1 HETATM 25 C CAT Y01 . . . K 10 -144.34 -145.709 214.689 1 102.14 ? CAT Y01 608 A 1 HETATM 26 C CAR Y01 . . . K 10 -145.297 -146.075 215.852 1 98.46 ? CAR Y01 608 A 1 HETATM 27 C CBC Y01 . . . K 10 -144.905 -145.381 217.162 1 110.66 ? CBC Y01 608 A 1 HETATM 28 O OAW Y01 . . . K 10 -145.956 -145.535 218.081 1 114.8 ? OAW Y01 608 A 1 HETATM 29 C CAY Y01 . . . K 10 -145.813 -146.636 218.96 1 113.78 ? CAY Y01 608 A 1 HETATM 30 O OAG Y01 . . . K 10 -145.287 -147.644 218.581 1 110.21 ? OAG Y01 608 A 1 HETATM 31 C CAM Y01 . . . K 10 -146.341 -146.543 220.384 1 117.16 ? CAM Y01 608 A 1 HETATM 32 C CAL Y01 . . . K 10 -146.182 -147.869 221.089 1 128.16 ? CAL Y01 608 A 1 HETATM 33 C CAX Y01 . . . K 10 -146.334 -148.997 220.117 1 128.74 ? CAX Y01 608 A 1 HETATM 34 O OAH Y01 . . . K 10 -145.329 -149.633 219.732 1 122.63 ? OAH Y01 608 A 1 HETATM 35 O OAF Y01 . . . K 10 -147.48 -149.299 219.702 1 120.35 1 OAF Y01 608 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #