data_4XP9 # _model_server_result.job_id Vs93EPhr98wo1dea8vzQ6Q _model_server_result.datetime_utc '2024-11-24 04:34:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xp9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":705}' # _entry.id 4XP9 # _exptl.entry_id 4XP9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.654 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XP9 _cell.length_a 97.348 _cell.length_b 140.748 _cell.length_c 166.76 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XP9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D GLC 1 A 1 GLC C 603 MAL 4 n D GLC 2 A 2 GLC C 603 MAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 124 C CYS 148 1_555 A SG CYS 133 C CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? disulf ? disulf2 B SG CYS 23 L CYS 23 1_555 B SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? disulf ? disulf3 B SG CYS 135 L CYS 135 1_555 B SG CYS 195 L CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf4 C SG CYS 22 H CYS 22 1_555 C SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? disulf ? disulf5 C SG CYS 146 H CYS 146 1_555 C SG CYS 201 H CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? covale ? covale1 A ND2 ASN 117 C ASN 141 1_555 F C1 NAG . C NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.471 ? covale ? covale2 D O4 GLC . A GLC 1 1_555 D C1 GLC . A GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.404 sing metalc ? metalc1 A O GLY 18 C GLY 42 1_555 M NA NA . C NA 710 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc2 A O ALA 20 C ALA 44 1_555 L NA NA . C NA 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc3 A O VAL 21 C VAL 45 1_555 M NA NA . C NA 710 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? metalc ? metalc4 A OD1 ASN 25 C ASN 49 1_555 L NA NA . C NA 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc5 A O SER 255 C SER 320 1_555 L NA NA . C NA 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.788 ? metalc ? metalc6 A OG SER 255 C SER 320 1_555 L NA NA . C NA 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc7 A OD1 ASN 287 C ASN 352 1_555 L NA NA . C NA 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.772 ? metalc ? metalc8 A O LEU 352 C LEU 417 1_555 M NA NA . C NA 710 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc9 A OD2 ASP 355 C ASP 420 1_555 M NA NA . C NA 710 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.923 ? metalc ? metalc10 A OG SER 356 C SER 421 1_555 M NA NA . C NA 710 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? metalc ? metalc11 L NA NA . C NA 709 1_555 O O HOH . C HOH 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.715 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 93 n n C1 C10 CLR sing 94 n n C1 H11 CLR sing 95 n n C1 H12 CLR sing 96 n n C2 C3 CLR sing 97 n n C2 H21 CLR sing 98 n n C2 H22 CLR sing 99 n n C3 C4 CLR sing 100 n n C3 O1 CLR sing 101 n n C3 H3 CLR sing 102 n n C4 C5 CLR sing 103 n n C4 H41 CLR sing 104 n n C4 H42 CLR sing 105 n n C5 C6 CLR doub 106 n n C5 C10 CLR sing 107 n n C6 C7 CLR sing 108 n n C6 H6 CLR sing 109 n n C7 C8 CLR sing 110 n n C7 H71 CLR sing 111 n n C7 H72 CLR sing 112 n n C8 C9 CLR sing 113 n n C8 C14 CLR sing 114 n n C8 H8 CLR sing 115 n n C9 C10 CLR sing 116 n n C9 C11 CLR sing 117 n n C9 H9 CLR sing 118 n n C10 C19 CLR sing 119 n n C11 C12 CLR sing 120 n n C11 H111 CLR sing 121 n n C11 H112 CLR sing 122 n n C12 C13 CLR sing 123 n n C12 H121 CLR sing 124 n n C12 H122 CLR sing 125 n n C13 C14 CLR sing 126 n n C13 C17 CLR sing 127 n n C13 C18 CLR sing 128 n n C14 C15 CLR sing 129 n n C14 H14 CLR sing 130 n n C15 C16 CLR sing 131 n n C15 H151 CLR sing 132 n n C15 H152 CLR sing 133 n n C16 C17 CLR sing 134 n n C16 H161 CLR sing 135 n n C16 H162 CLR sing 136 n n C17 C20 CLR sing 137 n n C17 H17 CLR sing 138 n n C18 H181 CLR sing 139 n n C18 H182 CLR sing 140 n n C18 H183 CLR sing 141 n n C19 H191 CLR sing 142 n n C19 H192 CLR sing 143 n n C19 H193 CLR sing 144 n n C20 C21 CLR sing 145 n n C20 C22 CLR sing 146 n n C20 H20 CLR sing 147 n n C21 H211 CLR sing 148 n n C21 H212 CLR sing 149 n n C21 H213 CLR sing 150 n n C22 C23 CLR sing 151 n n C22 H221 CLR sing 152 n n C22 H222 CLR sing 153 n n C23 C24 CLR sing 154 n n C23 H231 CLR sing 155 n n C23 H232 CLR sing 156 n n C24 C25 CLR sing 157 n n C24 H241 CLR sing 158 n n C24 H242 CLR sing 159 n n C25 C26 CLR sing 160 n n C25 C27 CLR sing 161 n n C25 H25 CLR sing 162 n n C26 H261 CLR sing 163 n n C26 H262 CLR sing 164 n n C26 H263 CLR sing 165 n n C27 H271 CLR sing 166 n n C27 H272 CLR sing 167 n n C27 H273 CLR sing 168 n n O1 H1 CLR sing 169 n n # _atom_sites.entry_id 4XP9 _atom_sites.fract_transf_matrix[1][1] 0.010272 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007105 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005997 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 Y01 C 1 701 601 Y01 Y01 . F 6 NAG C 1 702 602 NAG NAG . G 7 MPO C 1 704 604 MPO MPO . H 8 CLR C 1 705 605 CLR CLR . I 9 1WE C 1 706 606 1WE 1WE . J 10 P4G C 1 707 607 P4G P4G . K 10 P4G C 1 708 608 P4G P4G . L 11 NA C 1 709 609 NA NA . M 11 NA C 1 710 610 NA NA . N 12 CL C 1 711 611 CL CL . O 13 HOH C 1 801 701 HOH HOH . O 13 HOH C 2 802 702 HOH HOH . O 13 HOH C 3 803 703 HOH HOH . O 13 HOH C 4 804 704 HOH HOH . O 13 HOH C 5 805 705 HOH HOH . O 13 HOH C 6 806 706 HOH HOH . O 13 HOH C 7 807 707 HOH HOH . O 13 HOH C 8 808 708 HOH HOH . O 13 HOH C 9 809 709 HOH HOH . O 13 HOH C 10 810 710 HOH HOH . O 13 HOH C 11 811 711 HOH HOH . O 13 HOH C 12 812 712 HOH HOH . O 13 HOH C 13 813 713 HOH HOH . O 13 HOH C 14 814 714 HOH HOH . O 13 HOH C 15 815 715 HOH HOH . O 13 HOH C 16 816 716 HOH HOH . P 13 HOH L 1 301 301 HOH HOH . P 13 HOH L 2 302 302 HOH HOH . P 13 HOH L 3 303 303 HOH HOH . P 13 HOH L 4 304 304 HOH HOH . P 13 HOH L 5 305 305 HOH HOH . P 13 HOH L 6 306 306 HOH HOH . P 13 HOH L 7 307 307 HOH HOH . P 13 HOH L 8 308 308 HOH HOH . P 13 HOH L 9 309 309 HOH HOH . Q 13 HOH H 1 301 301 HOH HOH . Q 13 HOH H 2 302 302 HOH HOH . Q 13 HOH H 3 303 303 HOH HOH . Q 13 HOH H 4 304 304 HOH HOH . Q 13 HOH H 5 305 305 HOH HOH . Q 13 HOH H 6 306 306 HOH HOH . Q 13 HOH H 7 307 307 HOH HOH . Q 13 HOH H 8 308 308 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . H 8 -139.112 -158.252 201.907 1 98.7 ? C1 CLR 705 C 1 HETATM 2 C C2 CLR . . . H 8 -140.088 -159.325 202.381 1 96.07 ? C2 CLR 705 C 1 HETATM 3 C C3 CLR . . . H 8 -141.071 -158.726 203.38 1 92.05 ? C3 CLR 705 C 1 HETATM 4 C C4 CLR . . . H 8 -141.905 -157.688 202.637 1 92.74 ? C4 CLR 705 C 1 HETATM 5 C C5 CLR . . . H 8 -141.102 -156.78 201.717 1 91.21 ? C5 CLR 705 C 1 HETATM 6 C C6 CLR . . . H 8 -141.62 -155.577 201.438 1 87.01 ? C6 CLR 705 C 1 HETATM 7 C C7 CLR . . . H 8 -140.731 -154.369 201.292 1 91.23 ? C7 CLR 705 C 1 HETATM 8 C C8 CLR . . . H 8 -139.549 -154.729 200.413 1 90.53 ? C8 CLR 705 C 1 HETATM 9 C C9 CLR . . . H 8 -138.848 -155.977 200.937 1 93.13 ? C9 CLR 705 C 1 HETATM 10 C C10 CLR . . . H 8 -139.791 -157.18 201.064 1 94.57 ? C10 CLR 705 C 1 HETATM 11 C C11 CLR . . . H 8 -137.61 -156.3 200.092 1 91.7 ? C11 CLR 705 C 1 HETATM 12 C C12 CLR . . . H 8 -136.653 -155.109 199.908 1 92.81 ? C12 CLR 705 C 1 HETATM 13 C C13 CLR . . . H 8 -137.406 -153.865 199.443 1 93.03 ? C13 CLR 705 C 1 HETATM 14 C C14 CLR . . . H 8 -138.528 -153.609 200.424 1 88.46 ? C14 CLR 705 C 1 HETATM 15 C C15 CLR . . . H 8 -139.02 -152.208 200.111 1 83.37 ? C15 CLR 705 C 1 HETATM 16 C C16 CLR . . . H 8 -137.748 -151.471 199.684 1 85.08 ? C16 CLR 705 C 1 HETATM 17 C C17 CLR . . . H 8 -136.669 -152.528 199.496 1 89.24 ? C17 CLR 705 C 1 HETATM 18 C C18 CLR . . . H 8 -137.965 -154.107 198.042 1 85.23 ? C18 CLR 705 C 1 HETATM 19 C C19 CLR . . . H 8 -140.084 -157.73 199.673 1 85.23 ? C19 CLR 705 C 1 HETATM 20 C C20 CLR . . . H 8 -135.791 -152.164 198.307 1 89.68 ? C20 CLR 705 C 1 HETATM 21 C C21 CLR . . . H 8 -134.613 -153.124 198.145 1 91.53 ? C21 CLR 705 C 1 HETATM 22 C C22 CLR . . . H 8 -135.278 -150.732 198.49 1 86.27 ? C22 CLR 705 C 1 HETATM 23 C C23 CLR . . . H 8 -134.101 -150.455 197.554 1 81.27 ? C23 CLR 705 C 1 HETATM 24 C C24 CLR . . . H 8 -133.382 -149.173 197.942 1 78.97 ? C24 CLR 705 C 1 HETATM 25 C C25 CLR . . . H 8 -132.804 -148.458 196.725 1 78.69 ? C25 CLR 705 C 1 HETATM 26 C C26 CLR . . . H 8 -131.929 -147.277 197.141 1 75.52 ? C26 CLR 705 C 1 HETATM 27 C C27 CLR . . . H 8 -133.927 -147.981 195.811 1 77.46 ? C27 CLR 705 C 1 HETATM 28 O O1 CLR . . . H 8 -141.931 -159.739 203.952 1 83.04 ? O1 CLR 705 C 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 22 _model_server_stats.element_count 28 #