data_4XP9 # _model_server_result.job_id ATrdze_map-Iql2kKg5Utw _model_server_result.datetime_utc '2024-11-24 04:59:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xp9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":707}' # _entry.id 4XP9 # _exptl.entry_id 4XP9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 162.227 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XP9 _cell.length_a 97.348 _cell.length_b 140.748 _cell.length_c 166.76 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XP9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 10 J N N ? 10 K N N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D GLC 1 A 1 GLC C 603 MAL 4 n D GLC 2 A 2 GLC C 603 MAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 124 C CYS 148 1_555 A SG CYS 133 C CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? disulf ? disulf2 B SG CYS 23 L CYS 23 1_555 B SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? disulf ? disulf3 B SG CYS 135 L CYS 135 1_555 B SG CYS 195 L CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf4 C SG CYS 22 H CYS 22 1_555 C SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? disulf ? disulf5 C SG CYS 146 H CYS 146 1_555 C SG CYS 201 H CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? covale ? covale1 A ND2 ASN 117 C ASN 141 1_555 F C1 NAG . C NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.471 ? covale ? covale2 D O4 GLC . A GLC 1 1_555 D C1 GLC . A GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.404 sing metalc ? metalc1 A O GLY 18 C GLY 42 1_555 M NA NA . C NA 710 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc2 A O ALA 20 C ALA 44 1_555 L NA NA . C NA 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc3 A O VAL 21 C VAL 45 1_555 M NA NA . C NA 710 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? metalc ? metalc4 A OD1 ASN 25 C ASN 49 1_555 L NA NA . C NA 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc5 A O SER 255 C SER 320 1_555 L NA NA . C NA 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.788 ? metalc ? metalc6 A OG SER 255 C SER 320 1_555 L NA NA . C NA 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc7 A OD1 ASN 287 C ASN 352 1_555 L NA NA . C NA 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.772 ? metalc ? metalc8 A O LEU 352 C LEU 417 1_555 M NA NA . C NA 710 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc9 A OD2 ASP 355 C ASP 420 1_555 M NA NA . C NA 710 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.923 ? metalc ? metalc10 A OG SER 356 C SER 421 1_555 M NA NA . C NA 710 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? metalc ? metalc11 L NA NA . C NA 709 1_555 O O HOH . C HOH 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.715 ? # _chem_comp.formula 'C8 H18 O3' _chem_comp.formula_weight 162.227 _chem_comp.id P4G _chem_comp.mon_nstd_flag . _chem_comp.name 1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 C7 P4G sing 419 n n C8 H81 P4G sing 420 n n C8 H82 P4G sing 421 n n C8 H83 P4G sing 422 n n C7 O4 P4G sing 423 n n C7 H71 P4G sing 424 n n C7 H72 P4G sing 425 n n O4 C6 P4G sing 426 n n C6 C5 P4G sing 427 n n C6 H61 P4G sing 428 n n C6 H62 P4G sing 429 n n C5 O3 P4G sing 430 n n C5 H51 P4G sing 431 n n C5 H52 P4G sing 432 n n O3 C4 P4G sing 433 n n C4 C3 P4G sing 434 n n C4 H41 P4G sing 435 n n C4 H42 P4G sing 436 n n C3 O2 P4G sing 437 n n C3 H31 P4G sing 438 n n C3 H32 P4G sing 439 n n O2 C2 P4G sing 440 n n C2 C1 P4G sing 441 n n C2 H21 P4G sing 442 n n C2 H22 P4G sing 443 n n C1 H11 P4G sing 444 n n C1 H12 P4G sing 445 n n C1 H13 P4G sing 446 n n # _atom_sites.entry_id 4XP9 _atom_sites.fract_transf_matrix[1][1] 0.010272 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007105 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005997 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 Y01 C 1 701 601 Y01 Y01 . F 6 NAG C 1 702 602 NAG NAG . G 7 MPO C 1 704 604 MPO MPO . H 8 CLR C 1 705 605 CLR CLR . I 9 1WE C 1 706 606 1WE 1WE . J 10 P4G C 1 707 607 P4G P4G . K 10 P4G C 1 708 608 P4G P4G . L 11 NA C 1 709 609 NA NA . M 11 NA C 1 710 610 NA NA . N 12 CL C 1 711 611 CL CL . O 13 HOH C 1 801 701 HOH HOH . O 13 HOH C 2 802 702 HOH HOH . O 13 HOH C 3 803 703 HOH HOH . O 13 HOH C 4 804 704 HOH HOH . O 13 HOH C 5 805 705 HOH HOH . O 13 HOH C 6 806 706 HOH HOH . O 13 HOH C 7 807 707 HOH HOH . O 13 HOH C 8 808 708 HOH HOH . O 13 HOH C 9 809 709 HOH HOH . O 13 HOH C 10 810 710 HOH HOH . O 13 HOH C 11 811 711 HOH HOH . O 13 HOH C 12 812 712 HOH HOH . O 13 HOH C 13 813 713 HOH HOH . O 13 HOH C 14 814 714 HOH HOH . O 13 HOH C 15 815 715 HOH HOH . O 13 HOH C 16 816 716 HOH HOH . P 13 HOH L 1 301 301 HOH HOH . P 13 HOH L 2 302 302 HOH HOH . P 13 HOH L 3 303 303 HOH HOH . P 13 HOH L 4 304 304 HOH HOH . P 13 HOH L 5 305 305 HOH HOH . P 13 HOH L 6 306 306 HOH HOH . P 13 HOH L 7 307 307 HOH HOH . P 13 HOH L 8 308 308 HOH HOH . P 13 HOH L 9 309 309 HOH HOH . Q 13 HOH H 1 301 301 HOH HOH . Q 13 HOH H 2 302 302 HOH HOH . Q 13 HOH H 3 303 303 HOH HOH . Q 13 HOH H 4 304 304 HOH HOH . Q 13 HOH H 5 305 305 HOH HOH . Q 13 HOH H 6 306 306 HOH HOH . Q 13 HOH H 7 307 307 HOH HOH . Q 13 HOH H 8 308 308 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 P4G . . . J 10 -180.009 -146.245 199.777 1 113.36 ? C8 P4G 707 C 1 HETATM 2 C C7 P4G . . . J 10 -179.702 -144.99 199.019 1 121.58 ? C7 P4G 707 C 1 HETATM 3 O O4 P4G . . . J 10 -180.888 -144.183 198.853 1 123.97 ? O4 P4G 707 C 1 HETATM 4 C C6 P4G . . . J 10 -180.643 -142.787 198.536 1 120.44 ? C6 P4G 707 C 1 HETATM 5 C C5 P4G . . . J 10 -179.601 -142.614 197.431 1 119.79 ? C5 P4G 707 C 1 HETATM 6 O O3 P4G . . . J 10 -179.579 -141.209 197.072 1 123.44 ? O3 P4G 707 C 1 HETATM 7 C C4 P4G . . . J 10 -179.376 -140.959 195.674 1 124.46 ? C4 P4G 707 C 1 HETATM 8 C C3 P4G . . . J 10 -180.209 -139.707 195.231 1 120.27 ? C3 P4G 707 C 1 HETATM 9 O O2 P4G . . . J 10 -179.685 -138.516 195.899 1 114.76 ? O2 P4G 707 C 1 HETATM 10 C C2 P4G . . . J 10 -180.573 -137.381 195.86 1 116.83 ? C2 P4G 707 C 1 HETATM 11 C C1 P4G . . . J 10 -181.715 -137.561 196.839 1 111.37 ? C1 P4G 707 C 1 HETATM 12 H H81 P4G . . . J 10 -179.197 -146.762 199.888 1 136.04 ? H81 P4G 707 C 1 HETATM 13 H H82 P4G . . . J 10 -180.664 -146.769 199.285 1 136.04 ? H82 P4G 707 C 1 HETATM 14 H H83 P4G . . . J 10 -180.373 -146.01 200.663 1 136.04 ? H83 P4G 707 C 1 HETATM 15 H H71 P4G . . . J 10 -179.35 -145.217 198.155 1 145.9 ? H71 P4G 707 C 1 HETATM 16 H H72 P4G . . . J 10 -179.048 -144.488 199.501 1 145.9 ? H72 P4G 707 C 1 HETATM 17 H H61 P4G . . . J 10 -180.326 -142.328 199.347 1 144.53 ? H61 P4G 707 C 1 HETATM 18 H H62 P4G . . . J 10 -181.485 -142.375 198.247 1 144.53 ? H62 P4G 707 C 1 HETATM 19 H H51 P4G . . . J 10 -178.715 -142.888 197.76 1 143.74 ? H51 P4G 707 C 1 HETATM 20 H H52 P4G . . . J 10 -179.85 -143.155 196.648 1 143.74 ? H52 P4G 707 C 1 HETATM 21 H H41 P4G . . . J 10 -179.666 -141.741 195.158 1 149.35 ? H41 P4G 707 C 1 HETATM 22 H H42 P4G . . . J 10 -178.414 -140.792 195.507 1 149.35 ? H42 P4G 707 C 1 HETATM 23 H H31 P4G . . . J 10 -180.14 -139.592 194.246 1 144.33 ? H31 P4G 707 C 1 HETATM 24 H H32 P4G . . . J 10 -181.159 -139.836 195.484 1 144.33 ? H32 P4G 707 C 1 HETATM 25 H H21 P4G . . . J 10 -180.066 -136.564 196.097 1 140.2 ? H21 P4G 707 C 1 HETATM 26 H H22 P4G . . . J 10 -180.935 -137.286 194.955 1 140.2 ? H22 P4G 707 C 1 HETATM 27 H H11 P4G . . . J 10 -182.18 -138.393 196.646 1 133.65 ? H11 P4G 707 C 1 HETATM 28 H H12 P4G . . . J 10 -182.341 -136.807 196.754 1 133.65 ? H12 P4G 707 C 1 HETATM 29 H H13 P4G . . . J 10 -181.362 -137.589 197.749 1 133.65 ? H13 P4G 707 C 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #