data_4XPA # _model_server_result.job_id hQ1_yxsMGA8UWM5S34Q7Sg _model_server_result.datetime_utc '2024-11-24 07:54:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xpa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":701}' # _entry.id 4XPA # _exptl.entry_id 4XPA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.654 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XPA _cell.length_a 96.339 _cell.length_b 140.125 _cell.length_c 165.018 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XPA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 BGC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D BGC 1 B 1 BGC A 607 MAL 4 n D GLC 2 B 2 GLC A 607 MAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 129 A CYS 148 1_555 A SG CYS 138 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf2 B SG CYS 45 L CYS 23 1_555 B SG CYS 111 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf3 B SG CYS 157 L CYS 135 1_555 B SG CYS 217 L CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf4 C SG CYS 41 H CYS 22 1_555 C SG CYS 115 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf5 C SG CYS 165 H CYS 146 1_555 C SG CYS 220 H CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 D O4 BGC . B BGC 1 1_555 D C1 GLC . B GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 sing metalc ? metalc1 A O GLY 23 A GLY 42 1_555 J NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc2 A O ALA 25 A ALA 44 1_555 I NA NA . A NA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc3 A O VAL 26 A VAL 45 1_555 J NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.125 ? metalc ? metalc4 A OD1 ASP 27 A ASP 46 1_555 I NA NA . A NA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? metalc ? metalc5 A OD1 ASN 30 A ASN 49 1_555 I NA NA . A NA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc6 A O SER 260 A SER 320 1_555 I NA NA . A NA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.667 ? metalc ? metalc7 A OG SER 260 A SER 320 1_555 I NA NA . A NA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc8 A OD1 ASN 292 A ASN 352 1_555 I NA NA . A NA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc9 A O LEU 357 A LEU 417 1_555 J NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.672 ? metalc ? metalc10 A OD1 ASP 360 A ASP 420 1_555 J NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc11 A OD2 ASP 360 A ASP 420 1_555 J NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? metalc ? metalc12 A OG SER 361 A SER 421 1_555 J NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc13 I NA NA . A NA 705 1_555 K O HOH . A HOH 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc14 J NA NA . A NA 706 1_555 K O HOH . A HOH 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 114 n n C1 C10 CLR sing 115 n n C1 H11 CLR sing 116 n n C1 H12 CLR sing 117 n n C2 C3 CLR sing 118 n n C2 H21 CLR sing 119 n n C2 H22 CLR sing 120 n n C3 C4 CLR sing 121 n n C3 O1 CLR sing 122 n n C3 H3 CLR sing 123 n n C4 C5 CLR sing 124 n n C4 H41 CLR sing 125 n n C4 H42 CLR sing 126 n n C5 C6 CLR doub 127 n n C5 C10 CLR sing 128 n n C6 C7 CLR sing 129 n n C6 H6 CLR sing 130 n n C7 C8 CLR sing 131 n n C7 H71 CLR sing 132 n n C7 H72 CLR sing 133 n n C8 C9 CLR sing 134 n n C8 C14 CLR sing 135 n n C8 H8 CLR sing 136 n n C9 C10 CLR sing 137 n n C9 C11 CLR sing 138 n n C9 H9 CLR sing 139 n n C10 C19 CLR sing 140 n n C11 C12 CLR sing 141 n n C11 H111 CLR sing 142 n n C11 H112 CLR sing 143 n n C12 C13 CLR sing 144 n n C12 H121 CLR sing 145 n n C12 H122 CLR sing 146 n n C13 C14 CLR sing 147 n n C13 C17 CLR sing 148 n n C13 C18 CLR sing 149 n n C14 C15 CLR sing 150 n n C14 H14 CLR sing 151 n n C15 C16 CLR sing 152 n n C15 H151 CLR sing 153 n n C15 H152 CLR sing 154 n n C16 C17 CLR sing 155 n n C16 H161 CLR sing 156 n n C16 H162 CLR sing 157 n n C17 C20 CLR sing 158 n n C17 H17 CLR sing 159 n n C18 H181 CLR sing 160 n n C18 H182 CLR sing 161 n n C18 H183 CLR sing 162 n n C19 H191 CLR sing 163 n n C19 H192 CLR sing 164 n n C19 H193 CLR sing 165 n n C20 C21 CLR sing 166 n n C20 C22 CLR sing 167 n n C20 H20 CLR sing 168 n n C21 H211 CLR sing 169 n n C21 H212 CLR sing 170 n n C21 H213 CLR sing 171 n n C22 C23 CLR sing 172 n n C22 H221 CLR sing 173 n n C22 H222 CLR sing 174 n n C23 C24 CLR sing 175 n n C23 H231 CLR sing 176 n n C23 H232 CLR sing 177 n n C24 C25 CLR sing 178 n n C24 H241 CLR sing 179 n n C24 H242 CLR sing 180 n n C25 C26 CLR sing 181 n n C25 C27 CLR sing 182 n n C25 H25 CLR sing 183 n n C26 H261 CLR sing 184 n n C26 H262 CLR sing 185 n n C26 H263 CLR sing 186 n n C27 H271 CLR sing 187 n n C27 H272 CLR sing 188 n n C27 H273 CLR sing 189 n n O1 H1 CLR sing 190 n n # _atom_sites.entry_id 4XPA _atom_sites.fract_transf_matrix[1][1] 0.01038 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007136 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00606 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 CLR A 1 701 601 CLR CLR . F 5 CLR A 1 702 602 CLR CLR . G 6 42J A 1 703 603 42J 42J . H 7 CL A 1 704 604 CL CL . I 8 NA A 1 705 605 NA NA . J 8 NA A 1 706 606 NA NA . K 9 HOH A 1 801 709 HOH HOH . K 9 HOH A 2 802 710 HOH HOH . K 9 HOH A 3 803 703 HOH HOH . K 9 HOH A 4 804 701 HOH HOH . K 9 HOH A 5 805 706 HOH HOH . K 9 HOH A 6 806 708 HOH HOH . K 9 HOH A 7 807 707 HOH HOH . K 9 HOH A 8 808 713 HOH HOH . K 9 HOH A 9 809 705 HOH HOH . K 9 HOH A 10 810 704 HOH HOH . K 9 HOH A 11 811 712 HOH HOH . K 9 HOH A 12 812 711 HOH HOH . K 9 HOH A 13 813 702 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . E 5 -41.656 -157.51 35.184 1 102 ? C1 CLR 701 A 1 HETATM 2 C C2 CLR . . . E 5 -42.623 -158.626 35.578 1 99.78 ? C2 CLR 701 A 1 HETATM 3 C C3 CLR . . . E 5 -43.79 -158.084 36.399 1 95.54 ? C3 CLR 701 A 1 HETATM 4 C C4 CLR . . . E 5 -44.561 -157.084 35.546 1 94.61 ? C4 CLR 701 A 1 HETATM 5 C C5 CLR . . . E 5 -43.615 -156.045 34.985 1 95.06 ? C5 CLR 701 A 1 HETATM 6 C C6 CLR . . . E 5 -43.917 -154.744 35.092 1 92.23 ? C6 CLR 701 A 1 HETATM 7 C C7 CLR . . . E 5 -43.549 -153.775 33.993 1 89.64 ? C7 CLR 701 A 1 HETATM 8 C C8 CLR . . . E 5 -42.162 -154.081 33.436 1 89.71 ? C8 CLR 701 A 1 HETATM 9 C C9 CLR . . . E 5 -41.451 -155.217 34.172 1 96.67 ? C9 CLR 701 A 1 HETATM 10 C C10 CLR . . . E 5 -42.331 -156.457 34.312 1 99.51 ? C10 CLR 701 A 1 HETATM 11 C C11 CLR . . . E 5 -40.098 -155.508 33.513 1 88.95 ? C11 CLR 701 A 1 HETATM 12 C C12 CLR . . . E 5 -39.211 -154.259 33.44 1 90.95 ? C12 CLR 701 A 1 HETATM 13 C C13 CLR . . . E 5 -39.949 -153.107 32.765 1 92.44 ? C13 CLR 701 A 1 HETATM 14 C C14 CLR . . . E 5 -41.237 -152.875 33.527 1 92.2 ? C14 CLR 701 A 1 HETATM 15 C C15 CLR . . . E 5 -41.748 -151.529 33.037 1 80.1 ? C15 CLR 701 A 1 HETATM 16 C C16 CLR . . . E 5 -40.463 -150.731 32.813 1 80.96 ? C16 CLR 701 A 1 HETATM 17 C C17 CLR . . . E 5 -39.297 -151.727 32.817 1 87.01 ? C17 CLR 701 A 1 HETATM 18 C C18 CLR . . . E 5 -40.253 -153.455 31.309 1 76.76 ? C18 CLR 701 A 1 HETATM 19 C C19 CLR . . . E 5 -42.643 -157.038 32.937 1 89.76 ? C19 CLR 701 A 1 HETATM 20 C C20 CLR . . . E 5 -38.3 -151.402 31.704 1 81.06 ? C20 CLR 701 A 1 HETATM 21 C C21 CLR . . . E 5 -36.972 -152.139 31.857 1 84.61 ? C21 CLR 701 A 1 HETATM 22 C C22 CLR . . . E 5 -38.059 -149.897 31.684 1 79.74 ? C22 CLR 701 A 1 HETATM 23 C C23 CLR . . . E 5 -36.866 -149.494 30.824 1 75.19 ? C23 CLR 701 A 1 HETATM 24 C C24 CLR . . . E 5 -36.281 -148.192 31.357 1 82.27 ? C24 CLR 701 A 1 HETATM 25 C C25 CLR . . . E 5 -35.45 -147.464 30.309 1 78.7 ? C25 CLR 701 A 1 HETATM 26 C C26 CLR . . . E 5 -34.914 -146.15 30.868 1 65.99 ? C26 CLR 701 A 1 HETATM 27 C C27 CLR . . . E 5 -36.265 -147.227 29.046 1 72.01 ? C27 CLR 701 A 1 HETATM 28 O O1 CLR . . . E 5 -44.659 -159.151 36.809 1 74.34 ? O1 CLR 701 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 350 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #