data_4XPB # _model_server_result.job_id VA9Kc57tPVnGOUtgrK5RyQ _model_server_result.datetime_utc '2024-11-27 21:45:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xpb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":702}' # _entry.id 4XPB # _exptl.entry_id 4XPB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 303.353 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description COCAINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XPB _cell.length_a 97.498 _cell.length_b 139.963 _cell.length_c 166.959 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XPB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 BGC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D BGC 1 B 1 BGC A 603 N9S 4 n D GLC 2 B 2 GLC A 603 N9S # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 129 A CYS 148 1_555 A SG CYS 138 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 B SG CYS 23 L CYS 23 1_555 B SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 B SG CYS 135 L CYS 135 1_555 B SG CYS 195 L CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 C SG CYS 41 H CYS 22 1_555 C SG CYS 115 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 C SG CYS 165 H CYS 146 1_555 C SG CYS 220 H CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 D O4 BGC . B BGC 1 1_555 D C1 GLC . B GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 sing metalc ? metalc1 A O GLY 23 A GLY 42 1_555 I NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? metalc ? metalc2 A O ALA 25 A ALA 44 1_555 E NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc3 A O VAL 26 A VAL 45 1_555 I NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc4 A OD1 ASN 30 A ASN 49 1_555 E NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc5 A O SER 258 A SER 320 1_555 E NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? metalc ? metalc6 A OG SER 258 A SER 320 1_555 E NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc7 A OD1 ASN 290 A ASN 352 1_555 E NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? metalc ? metalc8 A O LEU 355 A LEU 417 1_555 I NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc9 A OD1 ASP 358 A ASP 420 1_555 I NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc10 A OG SER 359 A SER 421 1_555 I NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc11 E NA NA . A NA 701 1_555 K O HOH . A HOH 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? # _chem_comp.formula 'C17 H21 N O4' _chem_comp.formula_weight 303.353 _chem_comp.id COC _chem_comp.mon_nstd_flag . _chem_comp.name COCAINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O5 COC sing 171 n n C1 H2 COC sing 172 n n C1 H3 COC sing 173 n n C1 H4 COC sing 174 n n O5 C6 COC sing 175 n n C6 O7 COC doub 176 n n C6 C8 COC sing 177 n n C8 C10 COC sing 178 n n C8 C29 COC sing 179 n n C8 H9 COC sing 180 n n C10 N12 COC sing 181 n n C10 C18 COC sing 182 n n C10 H11 COC sing 183 n n N12 C14 COC sing 184 n n N12 C24 COC sing 185 n n C14 H15 COC sing 186 n n C14 H16 COC sing 187 n n C14 H17 COC sing 188 n n C18 C21 COC sing 189 n n C18 H19 COC sing 190 n n C18 H20 COC sing 191 n n C21 C24 COC sing 192 n n C21 H22 COC sing 193 n n C21 H23 COC sing 194 n n C24 C26 COC sing 195 n n C24 H25 COC sing 196 n n C26 C29 COC sing 197 n n C26 H27 COC sing 198 n n C26 H28 COC sing 199 n n C29 O1 COC sing 200 n n C29 H30 COC sing 201 n n O1 C2 COC sing 202 n n C2 O3 COC doub 203 n n C2 C4 COC sing 204 n n C4 C5 COC doub 205 n y C4 C13 COC sing 206 n y C5 C7 COC sing 207 n y C5 H6 COC sing 208 n n C7 C9 COC doub 209 n y C7 H8 COC sing 210 n n C9 C11 COC sing 211 n y C9 H10 COC sing 212 n n C11 C13 COC doub 213 n y C11 H12 COC sing 214 n n C13 H14 COC sing 215 n n # _atom_sites.entry_id 4XPB _atom_sites.fract_transf_matrix[1][1] 0.010257 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007145 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005989 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 NA A 1 701 601 NA NA . F 6 COC A 1 702 602 COC COC . G 7 CLR A 1 704 604 CLR CLR . H 7 CLR A 1 705 605 CLR CLR . I 5 NA A 1 706 606 NA NA . J 8 CL A 1 707 607 CL CL . K 9 HOH A 1 801 701 HOH HOH . K 9 HOH A 2 802 702 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 COC . . . F 6 -9.848 0.864 25.788 1 64.86 ? C1 COC 702 A 1 HETATM 2 O O5 COC . . . F 6 -9.759 0.349 27.137 1 68.59 ? O5 COC 702 A 1 HETATM 3 C C6 COC . . . F 6 -8.49 -0.294 27.413 1 71.7 ? C6 COC 702 A 1 HETATM 4 O O7 COC . . . F 6 -7.551 -0.11 26.651 1 72.09 ? O7 COC 702 A 1 HETATM 5 C C8 COC . . . F 6 -8.34 -1.18 28.597 1 63.24 ? C8 COC 702 A 1 HETATM 6 C C10 COC . . . F 6 -7.119 -0.817 29.342 1 66.99 ? C10 COC 702 A 1 HETATM 7 N N12 COC . . . F 6 -6.013 -1.143 28.718 1 66.2 ? N12 COC 702 A 1 HETATM 8 C C14 COC . . . F 6 -4.884 -0.463 29.357 1 62.13 ? C14 COC 702 A 1 HETATM 9 C C18 COC . . . F 6 -7.044 -1.718 30.615 1 63.48 ? C18 COC 702 A 1 HETATM 10 C C21 COC . . . F 6 -6.155 -2.808 30.201 1 65.17 ? C21 COC 702 A 1 HETATM 11 C C24 COC . . . F 6 -5.8 -2.441 28.738 1 68.09 ? C24 COC 702 A 1 HETATM 12 C C26 COC . . . F 6 -6.728 -3.213 27.824 1 62.32 ? C26 COC 702 A 1 HETATM 13 C C29 COC . . . F 6 -8.265 -2.763 28.024 1 65.24 ? C29 COC 702 A 1 HETATM 14 O O1 COC . . . F 6 -8.843 -2.802 26.899 1 70.3 ? O1 COC 702 A 1 HETATM 15 C C2 COC . . . F 6 -10.268 -3.212 26.935 1 64.18 ? C2 COC 702 A 1 HETATM 16 O O3 COC . . . F 6 -10.892 -3.173 27.97 1 65.78 ? O3 COC 702 A 1 HETATM 17 C C4 COC . . . F 6 -10.93 -3.674 25.664 1 67.49 ? C4 COC 702 A 1 HETATM 18 C C5 COC . . . F 6 -12.287 -3.915 25.632 1 60.08 ? C5 COC 702 A 1 HETATM 19 C C7 COC . . . F 6 -12.862 -4.331 24.462 1 65.08 ? C7 COC 702 A 1 HETATM 20 C C9 COC . . . F 6 -12.088 -4.506 23.322 1 56.02 ? C9 COC 702 A 1 HETATM 21 C C11 COC . . . F 6 -10.746 -4.261 23.359 1 58.6 ? C11 COC 702 A 1 HETATM 22 C C13 COC . . . F 6 -10.163 -3.843 24.532 1 67.28 ? C13 COC 702 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 239 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 22 #