data_4XPB # _model_server_result.job_id gEZPORhAfjK98lLoj4tnrA _model_server_result.datetime_utc '2024-10-14 11:28:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xpb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":704}' # _entry.id 4XPB # _exptl.entry_id 4XPB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.654 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XPB _cell.length_a 97.498 _cell.length_b 139.963 _cell.length_c 166.959 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XPB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 G N N ? 7 H N N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 BGC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D BGC 1 B 1 BGC A 603 N9S 4 n D GLC 2 B 2 GLC A 603 N9S # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 129 A CYS 148 1_555 A SG CYS 138 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 B SG CYS 23 L CYS 23 1_555 B SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 B SG CYS 135 L CYS 135 1_555 B SG CYS 195 L CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 C SG CYS 41 H CYS 22 1_555 C SG CYS 115 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 C SG CYS 165 H CYS 146 1_555 C SG CYS 220 H CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 D O4 BGC . B BGC 1 1_555 D C1 GLC . B GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 sing metalc ? metalc1 A O GLY 23 A GLY 42 1_555 I NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? metalc ? metalc2 A O ALA 25 A ALA 44 1_555 E NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc3 A O VAL 26 A VAL 45 1_555 I NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc4 A OD1 ASN 30 A ASN 49 1_555 E NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc5 A O SER 258 A SER 320 1_555 E NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? metalc ? metalc6 A OG SER 258 A SER 320 1_555 E NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc7 A OD1 ASN 290 A ASN 352 1_555 E NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? metalc ? metalc8 A O LEU 355 A LEU 417 1_555 I NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc9 A OD1 ASP 358 A ASP 420 1_555 I NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc10 A OG SER 359 A SER 421 1_555 I NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc11 E NA NA . A NA 701 1_555 K O HOH . A HOH 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4XPB _atom_sites.fract_transf_matrix[1][1] 0.010257 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007145 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005989 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 NA A 1 701 601 NA NA . F 6 COC A 1 702 602 COC COC . G 7 CLR A 1 704 604 CLR CLR . H 7 CLR A 1 705 605 CLR CLR . I 5 NA A 1 706 606 NA NA . J 8 CL A 1 707 607 CL CL . K 9 HOH A 1 801 701 HOH HOH . K 9 HOH A 2 802 702 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . G 7 6.304 -17.703 35.735 1 115.72 ? C1 CLR 704 A 1 HETATM 2 C C2 CLR . . . G 7 5.381 -18.814 36.214 1 115.49 ? C2 CLR 704 A 1 HETATM 3 C C3 CLR . . . G 7 4.15 -18.205 36.865 1 117.72 ? C3 CLR 704 A 1 HETATM 4 C C4 CLR . . . G 7 3.361 -17.455 35.801 1 119.41 ? C4 CLR 704 A 1 HETATM 5 C C5 CLR . . . G 7 4.242 -16.465 35.071 1 118.73 ? C5 CLR 704 A 1 HETATM 6 C C6 CLR . . . G 7 3.712 -15.275 34.754 1 114.16 ? C6 CLR 704 A 1 HETATM 7 C C7 CLR . . . G 7 4.568 -14.052 34.553 1 109.3 ? C7 CLR 704 A 1 HETATM 8 C C8 CLR . . . G 7 5.819 -14.438 33.788 1 110.24 ? C8 CLR 704 A 1 HETATM 9 C C9 CLR . . . G 7 6.53 -15.593 34.484 1 113.2 ? C9 CLR 704 A 1 HETATM 10 C C10 CLR . . . G 7 5.654 -16.833 34.665 1 114.34 ? C10 CLR 704 A 1 HETATM 11 C C11 CLR . . . G 7 7.848 -15.934 33.777 1 112.62 ? C11 CLR 704 A 1 HETATM 12 C C12 CLR . . . G 7 8.767 -14.72 33.622 1 113.39 ? C12 CLR 704 A 1 HETATM 13 C C13 CLR . . . G 7 8.03 -13.584 32.926 1 113.37 ? C13 CLR 704 A 1 HETATM 14 C C14 CLR . . . G 7 6.794 -13.273 33.742 1 113.86 ? C14 CLR 704 A 1 HETATM 15 C C15 CLR . . . G 7 6.291 -11.942 33.204 1 106.9 ? C15 CLR 704 A 1 HETATM 16 C C16 CLR . . . G 7 7.582 -11.197 32.866 1 104.99 ? C16 CLR 704 A 1 HETATM 17 C C17 CLR . . . G 7 8.721 -12.223 32.88 1 112.54 ? C17 CLR 704 A 1 HETATM 18 C C18 CLR . . . G 7 7.637 -13.999 31.51 1 103.94 ? C18 CLR 704 A 1 HETATM 19 C C19 CLR . . . G 7 5.572 -17.609 33.356 1 112.97 ? C19 CLR 704 A 1 HETATM 20 C C20 CLR . . . G 7 9.697 -11.984 31.725 1 107.01 ? C20 CLR 704 A 1 HETATM 21 C C21 CLR . . . G 7 11.012 -12.741 31.886 1 102.79 ? C21 CLR 704 A 1 HETATM 22 C C22 CLR . . . G 7 9.968 -10.487 31.602 1 102.9 ? C22 CLR 704 A 1 HETATM 23 C C23 CLR . . . G 7 11.205 -10.169 30.771 1 105.31 ? C23 CLR 704 A 1 HETATM 24 C C24 CLR . . . G 7 11.713 -8.77 31.105 1 103.91 ? C24 CLR 704 A 1 HETATM 25 C C25 CLR . . . G 7 12.948 -8.408 30.29 1 108.88 ? C25 CLR 704 A 1 HETATM 26 C C26 CLR . . . G 7 13.59 -7.129 30.812 1 107.55 ? C26 CLR 704 A 1 HETATM 27 C C27 CLR . . . G 7 12.603 -8.271 28.813 1 103.58 ? C27 CLR 704 A 1 HETATM 28 O O1 CLR . . . G 7 3.333 -19.237 37.432 1 105.52 ? O1 CLR 704 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 28 #