data_4XPC # _model_server_result.job_id JKwDDyrOrM5pcnxc8t9lwA _model_server_result.datetime_utc '2024-10-18 16:23:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xpc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 4XPC # _exptl.entry_id 4XPC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XPC _cell.length_a 54.636 _cell.length_b 145.273 _cell.length_c 46.801 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XPC _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O3' DA 8 B DA 8 1_555 C P DT 1 G DT 9 2_655 ? ? ? ? ? ? ? ? ? ? ? ? 1.597 sing hydrog WATSON-CRICK hydrog1 B N3 DC 1 B DC 1 1_555 C N1 DG 8 G DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N4 DC 1 B DC 1 1_555 C O6 DG 8 G DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O2 DC 1 B DC 1 1_555 C N2 DG 8 G DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N3 DT 2 B DT 2 1_555 C N1 DA 7 G DA 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B O4 DT 2 B DT 2 1_555 C N6 DA 7 G DA 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N3 DT 3 B DT 3 1_555 C N1 DA 6 G DA 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B O4 DT 3 B DT 3 1_555 C N6 DA 6 G DA 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N1 DA 4 B DA 4 1_555 C N3 DT 5 G DT 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B N6 DA 4 B DA 4 1_555 C O4 DT 5 G DT 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N3 DT 5 B DT 5 1_555 C N1 DA 4 G DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B O4 DT 5 B DT 5 1_555 C N6 DA 4 G DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N1 DA 6 B DA 6 1_555 C N3 DT 3 G DT 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B N6 DA 6 B DA 6 1_555 C O4 DT 3 G DT 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N1 DA 7 B DA 7 1_555 C N3 DT 2 G DT 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B N6 DA 7 B DA 7 1_555 C O4 DT 2 G DT 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B N1 DA 8 B DA 8 1_555 C N3 DT 1 G DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B N6 DA 8 B DA 8 1_555 C O4 DT 1 G DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 232 n n C1 C2 EDO sing 233 n n C1 H11 EDO sing 234 n n C1 H12 EDO sing 235 n n O1 HO1 EDO sing 236 n n C2 O2 EDO sing 237 n n C2 H21 EDO sing 238 n n C2 H22 EDO sing 239 n n O2 HO2 EDO sing 240 n n # _atom_sites.entry_id 4XPC _atom_sites.fract_transf_matrix[1][1] 0.018303 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006884 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021367 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 EDO A 1 301 301 EDO EDO . E 4 EDO A 1 302 303 EDO EDO . F 4 EDO A 1 303 304 EDO EDO . G 5 HOH A 1 401 174 HOH HOH . G 5 HOH A 2 402 111 HOH HOH . G 5 HOH A 3 403 53 HOH HOH . G 5 HOH A 4 404 69 HOH HOH . G 5 HOH A 5 405 197 HOH HOH . G 5 HOH A 6 406 139 HOH HOH . G 5 HOH A 7 407 80 HOH HOH . G 5 HOH A 8 408 13 HOH HOH . G 5 HOH A 9 409 18 HOH HOH . G 5 HOH A 10 410 65 HOH HOH . G 5 HOH A 11 411 105 HOH HOH . G 5 HOH A 12 412 9 HOH HOH . G 5 HOH A 13 413 96 HOH HOH . G 5 HOH A 14 414 29 HOH HOH . G 5 HOH A 15 415 35 HOH HOH . G 5 HOH A 16 416 34 HOH HOH . G 5 HOH A 17 417 87 HOH HOH . G 5 HOH A 18 418 113 HOH HOH . G 5 HOH A 19 419 117 HOH HOH . G 5 HOH A 20 420 121 HOH HOH . G 5 HOH A 21 421 3 HOH HOH . G 5 HOH A 22 422 54 HOH HOH . G 5 HOH A 23 423 138 HOH HOH . G 5 HOH A 24 424 10 HOH HOH . G 5 HOH A 25 425 147 HOH HOH . G 5 HOH A 26 426 91 HOH HOH . G 5 HOH A 27 427 114 HOH HOH . G 5 HOH A 28 428 15 HOH HOH . G 5 HOH A 29 429 97 HOH HOH . G 5 HOH A 30 430 31 HOH HOH . G 5 HOH A 31 431 43 HOH HOH . G 5 HOH A 32 432 175 HOH HOH . G 5 HOH A 33 433 140 HOH HOH . G 5 HOH A 34 434 41 HOH HOH . G 5 HOH A 35 435 190 HOH HOH . G 5 HOH A 36 436 63 HOH HOH . G 5 HOH A 37 437 149 HOH HOH . G 5 HOH A 38 438 66 HOH HOH . G 5 HOH A 39 439 189 HOH HOH . G 5 HOH A 40 440 49 HOH HOH . G 5 HOH A 41 441 192 HOH HOH . G 5 HOH A 42 442 194 HOH HOH . G 5 HOH A 43 443 68 HOH HOH . G 5 HOH A 44 444 166 HOH HOH . G 5 HOH A 45 445 36 HOH HOH . G 5 HOH A 46 446 21 HOH HOH . G 5 HOH A 47 447 110 HOH HOH . G 5 HOH A 48 448 193 HOH HOH . G 5 HOH A 49 449 1 HOH HOH . G 5 HOH A 50 450 2 HOH HOH . G 5 HOH A 51 451 4 HOH HOH . G 5 HOH A 52 452 5 HOH HOH . G 5 HOH A 53 453 6 HOH HOH . G 5 HOH A 54 454 7 HOH HOH . G 5 HOH A 55 455 8 HOH HOH . G 5 HOH A 56 456 11 HOH HOH . G 5 HOH A 57 457 12 HOH HOH . G 5 HOH A 58 458 14 HOH HOH . G 5 HOH A 59 459 16 HOH HOH . G 5 HOH A 60 460 17 HOH HOH . G 5 HOH A 61 461 19 HOH HOH . G 5 HOH A 62 462 20 HOH HOH . G 5 HOH A 63 463 22 HOH HOH . G 5 HOH A 64 464 23 HOH HOH . G 5 HOH A 65 465 24 HOH HOH . G 5 HOH A 66 466 25 HOH HOH . G 5 HOH A 67 467 26 HOH HOH . G 5 HOH A 68 468 27 HOH HOH . G 5 HOH A 69 469 28 HOH HOH . G 5 HOH A 70 470 30 HOH HOH . G 5 HOH A 71 471 32 HOH HOH . G 5 HOH A 72 472 33 HOH HOH . G 5 HOH A 73 473 37 HOH HOH . G 5 HOH A 74 474 38 HOH HOH . G 5 HOH A 75 475 39 HOH HOH . G 5 HOH A 76 476 40 HOH HOH . G 5 HOH A 77 477 42 HOH HOH . G 5 HOH A 78 478 44 HOH HOH . G 5 HOH A 79 479 45 HOH HOH . G 5 HOH A 80 480 46 HOH HOH . G 5 HOH A 81 481 47 HOH HOH . G 5 HOH A 82 482 48 HOH HOH . G 5 HOH A 83 483 50 HOH HOH . G 5 HOH A 84 484 51 HOH HOH . G 5 HOH A 85 485 52 HOH HOH . G 5 HOH A 86 486 55 HOH HOH . G 5 HOH A 87 487 56 HOH HOH . G 5 HOH A 88 488 57 HOH HOH . G 5 HOH A 89 489 59 HOH HOH . G 5 HOH A 90 490 60 HOH HOH . G 5 HOH A 91 491 61 HOH HOH . G 5 HOH A 92 492 62 HOH HOH . G 5 HOH A 93 493 64 HOH HOH . G 5 HOH A 94 494 67 HOH HOH . G 5 HOH A 95 495 70 HOH HOH . G 5 HOH A 96 496 71 HOH HOH . G 5 HOH A 97 497 72 HOH HOH . G 5 HOH A 98 498 73 HOH HOH . G 5 HOH A 99 499 74 HOH HOH . G 5 HOH A 100 500 75 HOH HOH . G 5 HOH A 101 501 76 HOH HOH . G 5 HOH A 102 502 77 HOH HOH . G 5 HOH A 103 503 78 HOH HOH . G 5 HOH A 104 504 79 HOH HOH . G 5 HOH A 105 505 82 HOH HOH . G 5 HOH A 106 506 83 HOH HOH . G 5 HOH A 107 507 84 HOH HOH . G 5 HOH A 108 508 85 HOH HOH . G 5 HOH A 109 509 86 HOH HOH . G 5 HOH A 110 510 88 HOH HOH . G 5 HOH A 111 511 89 HOH HOH . G 5 HOH A 112 512 90 HOH HOH . G 5 HOH A 113 513 92 HOH HOH . G 5 HOH A 114 514 93 HOH HOH . G 5 HOH A 115 515 94 HOH HOH . G 5 HOH A 116 516 95 HOH HOH . G 5 HOH A 117 517 98 HOH HOH . G 5 HOH A 118 518 99 HOH HOH . G 5 HOH A 119 519 100 HOH HOH . G 5 HOH A 120 520 101 HOH HOH . G 5 HOH A 121 521 102 HOH HOH . G 5 HOH A 122 522 103 HOH HOH . G 5 HOH A 123 523 104 HOH HOH . G 5 HOH A 124 524 106 HOH HOH . G 5 HOH A 125 525 107 HOH HOH . G 5 HOH A 126 526 108 HOH HOH . G 5 HOH A 127 527 109 HOH HOH . G 5 HOH A 128 528 118 HOH HOH . G 5 HOH A 129 529 120 HOH HOH . G 5 HOH A 130 530 122 HOH HOH . G 5 HOH A 131 531 123 HOH HOH . G 5 HOH A 132 532 124 HOH HOH . G 5 HOH A 133 533 126 HOH HOH . G 5 HOH A 134 534 128 HOH HOH . G 5 HOH A 135 535 130 HOH HOH . G 5 HOH A 136 536 131 HOH HOH . G 5 HOH A 137 537 132 HOH HOH . G 5 HOH A 138 538 133 HOH HOH . G 5 HOH A 139 539 134 HOH HOH . G 5 HOH A 140 540 135 HOH HOH . G 5 HOH A 141 541 136 HOH HOH . G 5 HOH A 142 542 137 HOH HOH . G 5 HOH A 143 543 141 HOH HOH . G 5 HOH A 144 544 142 HOH HOH . G 5 HOH A 145 545 143 HOH HOH . G 5 HOH A 146 546 144 HOH HOH . G 5 HOH A 147 547 145 HOH HOH . G 5 HOH A 148 548 146 HOH HOH . G 5 HOH A 149 549 150 HOH HOH . G 5 HOH A 150 550 151 HOH HOH . G 5 HOH A 151 551 152 HOH HOH . G 5 HOH A 152 552 153 HOH HOH . G 5 HOH A 153 553 154 HOH HOH . G 5 HOH A 154 554 156 HOH HOH . G 5 HOH A 155 555 157 HOH HOH . G 5 HOH A 156 556 158 HOH HOH . G 5 HOH A 157 557 161 HOH HOH . G 5 HOH A 158 558 164 HOH HOH . G 5 HOH A 159 559 165 HOH HOH . G 5 HOH A 160 560 167 HOH HOH . G 5 HOH A 161 561 168 HOH HOH . G 5 HOH A 162 562 169 HOH HOH . G 5 HOH A 163 563 170 HOH HOH . G 5 HOH A 164 564 171 HOH HOH . G 5 HOH A 165 565 172 HOH HOH . G 5 HOH A 166 566 173 HOH HOH . G 5 HOH A 167 567 176 HOH HOH . G 5 HOH A 168 568 177 HOH HOH . G 5 HOH A 169 569 178 HOH HOH . G 5 HOH A 170 570 179 HOH HOH . G 5 HOH A 171 571 180 HOH HOH . G 5 HOH A 172 572 181 HOH HOH . G 5 HOH A 173 573 182 HOH HOH . G 5 HOH A 174 574 183 HOH HOH . G 5 HOH A 175 575 184 HOH HOH . G 5 HOH A 176 576 185 HOH HOH . G 5 HOH A 177 577 186 HOH HOH . G 5 HOH A 178 578 187 HOH HOH . G 5 HOH A 179 579 191 HOH HOH . G 5 HOH A 180 580 195 HOH HOH . G 5 HOH A 181 581 196 HOH HOH . G 5 HOH A 182 582 198 HOH HOH . G 5 HOH A 183 583 199 HOH HOH . G 5 HOH A 184 584 200 HOH HOH . G 5 HOH A 185 585 202 HOH HOH . G 5 HOH A 186 586 203 HOH HOH . H 5 HOH B 1 101 159 HOH HOH . H 5 HOH B 2 102 160 HOH HOH . H 5 HOH B 3 103 162 HOH HOH . H 5 HOH B 4 104 163 HOH HOH . H 5 HOH B 5 105 201 HOH HOH . I 5 HOH G 1 101 112 HOH HOH . I 5 HOH G 2 102 119 HOH HOH . I 5 HOH G 3 103 125 HOH HOH . I 5 HOH G 4 104 127 HOH HOH . I 5 HOH G 5 105 188 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 4 8.858 35.784 -4.278 1 29.44 ? C1 EDO 301 A 1 HETATM 2 O O1 EDO . . . D 4 8.585 36.454 -3.045 1 27.79 ? O1 EDO 301 A 1 HETATM 3 C C2 EDO . . . D 4 8.04 36.396 -5.408 1 30.31 ? C2 EDO 301 A 1 HETATM 4 O O2 EDO . . . D 4 8.63 37.656 -5.755 1 31.65 ? O2 EDO 301 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 235 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #