data_4XPD # _model_server_result.job_id Qsj1JIE2989cpK_Zjmpd_g _model_server_result.datetime_utc '2024-11-23 10:46:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xpd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":101}' # _entry.id 4XPD # _exptl.entry_id 4XPD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 825.57 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CARBOXYMETHYL COENZYME *A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XPD _cell.length_a 85.564 _cell.length_b 113.649 _cell.length_c 146.721 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XPD _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id D _struct_conn.ptnr1_label_atom_id N _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 1 _struct_conn.ptnr1_auth_asym_id F _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 1 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id G _struct_conn.ptnr2_label_atom_id C2 _struct_conn.ptnr2_label_comp_id CMC _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id F _struct_conn.ptnr2_auth_comp_id CMC _struct_conn.ptnr2_auth_seq_id 101 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.325 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C23 H38 N7 O18 P3 S' _chem_comp.formula_weight 825.57 _chem_comp.id CMC _chem_comp.mon_nstd_flag . _chem_comp.name 'CARBOXYMETHYL COENZYME *A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A CMC sing 161 n y N1A C6A CMC doub 162 n y C2A N3A CMC doub 163 n y C2A H2A CMC sing 164 n n N3A C4A CMC sing 165 n y C4A C5A CMC doub 166 n y C4A N9A CMC sing 167 n y C5A C6A CMC sing 168 n y C5A N7A CMC sing 169 n y C6A N6A CMC sing 170 n n N6A H61A CMC sing 171 n n N6A H62A CMC sing 172 n n N7A C8A CMC doub 173 n y C8A N9A CMC sing 174 n y C8A H8A CMC sing 175 n n N9A C1B CMC sing 176 n n C1B C2B CMC sing 177 n n C1B O4B CMC sing 178 n n C1B H1B CMC sing 179 n n C2B O2B CMC sing 180 n n C2B C3B CMC sing 181 n n C2B H2B CMC sing 182 n n O2B HO2A CMC sing 183 n n C3B O3B CMC sing 184 n n C3B C4B CMC sing 185 n n C3B H3B CMC sing 186 n n O3B P3B CMC sing 187 n n P3B O7A CMC doub 188 n n P3B O8A CMC sing 189 n n P3B O9A CMC sing 190 n n O8A HOA8 CMC sing 191 n n O9A HOA9 CMC sing 192 n n C4B O4B CMC sing 193 n n C4B C5B CMC sing 194 n n C4B H4B CMC sing 195 n n C5B O5B CMC sing 196 n n C5B H51A CMC sing 197 n n C5B H52A CMC sing 198 n n O5B P1A CMC sing 199 n n P1A O1A CMC doub 200 n n P1A O2A CMC sing 201 n n P1A O3A CMC sing 202 n n O2A HOA2 CMC sing 203 n n O3A P2A CMC sing 204 n n P2A O4A CMC doub 205 n n P2A O5A CMC sing 206 n n P2A O6A CMC sing 207 n n O5A HOA5 CMC sing 208 n n O6A CCP CMC sing 209 n n CBP CCP CMC sing 210 n n CBP CDP CMC sing 211 n n CBP CEP CMC sing 212 n n CBP CAP CMC sing 213 n n CCP H121 CMC sing 214 n n CCP H122 CMC sing 215 n n CDP H131 CMC sing 216 n n CDP H132 CMC sing 217 n n CDP H133 CMC sing 218 n n CEP H141 CMC sing 219 n n CEP H142 CMC sing 220 n n CEP H143 CMC sing 221 n n CAP OAP CMC sing 222 n n CAP C9P CMC sing 223 n n CAP H10 CMC sing 224 n n OAP HO1 CMC sing 225 n n C9P O9P CMC doub 226 n n C9P N8P CMC sing 227 n n N8P C7P CMC sing 228 n n N8P HN8 CMC sing 229 n n C7P C6P CMC sing 230 n n C7P H71 CMC sing 231 n n C7P H72 CMC sing 232 n n C6P C5P CMC sing 233 n n C6P H61 CMC sing 234 n n C6P H62 CMC sing 235 n n C5P O5P CMC doub 236 n n C5P N4P CMC sing 237 n n N4P C3P CMC sing 238 n n N4P HN4 CMC sing 239 n n C3P C2P CMC sing 240 n n C3P H31 CMC sing 241 n n C3P H32 CMC sing 242 n n C2P S1P CMC sing 243 n n C2P H21 CMC sing 244 n n C2P H22 CMC sing 245 n n S1P C1 CMC sing 246 n n C1 C2 CMC sing 247 n n C1 H11 CMC sing 248 n n C1 H12 CMC sing 249 n n C2 O21 CMC doub 250 n n C2 O22 CMC sing 251 n n O22 HO22 CMC sing 252 n n # _atom_sites.entry_id 4XPD _atom_sites.fract_transf_matrix[1][1] 0.011687 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008799 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006816 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 G4P A 1 901 1 G4P G4P . F 6 ACO C 1 201 1 ACO BCO . G 7 CMC F 1 101 1 CMC ACO . H 8 HOH A 1 1001 1 HOH HOH . H 8 HOH A 2 1002 2 HOH HOH . H 8 HOH A 3 1003 3 HOH HOH . H 8 HOH A 4 1004 6 HOH HOH . H 8 HOH A 5 1005 7 HOH HOH . H 8 HOH A 6 1006 8 HOH HOH . H 8 HOH A 7 1007 9 HOH HOH . H 8 HOH A 8 1008 10 HOH HOH . H 8 HOH A 9 1009 11 HOH HOH . I 8 HOH B 1 301 4 HOH HOH . I 8 HOH B 2 302 5 HOH HOH . I 8 HOH B 3 303 12 HOH HOH . J 8 HOH C 1 301 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A CMC . . . G 7 44.016 -6.488 -4.473 1 33.09 ? N1A CMC 101 F 1 HETATM 2 C C2A CMC . . . G 7 45.059 -6.99 -5.163 1 33.22 ? C2A CMC 101 F 1 HETATM 3 N N3A CMC . . . G 7 44.888 -7.764 -6.252 1 33.16 ? N3A CMC 101 F 1 HETATM 4 C C4A CMC . . . G 7 43.646 -8.077 -6.712 1 33.37 ? C4A CMC 101 F 1 HETATM 5 C C5A CMC . . . G 7 42.528 -7.599 -6.053 1 33.13 ? C5A CMC 101 F 1 HETATM 6 C C6A CMC . . . G 7 42.744 -6.75 -4.855 1 32.62 ? C6A CMC 101 F 1 HETATM 7 N N6A CMC . . . G 7 41.69 -6.255 -4.175 1 32.08 ? N6A CMC 101 F 1 HETATM 8 N N7A CMC . . . G 7 41.438 -8.044 -6.702 1 32.6 ? N7A CMC 101 F 1 HETATM 9 C C8A CMC . . . G 7 41.875 -8.785 -7.743 1 33.22 ? C8A CMC 101 F 1 HETATM 10 N N9A CMC . . . G 7 43.215 -8.798 -7.745 1 33.5 ? N9A CMC 101 F 1 HETATM 11 C C1B CMC . . . G 7 44.102 -9.506 -8.7 1 34.27 ? C1B CMC 101 F 1 HETATM 12 C C2B CMC . . . G 7 43.779 -10.995 -8.753 1 34.58 ? C2B CMC 101 F 1 HETATM 13 O O2B CMC . . . G 7 44.405 -11.718 -7.686 1 35.33 ? O2B CMC 101 F 1 HETATM 14 C C3B CMC . . . G 7 44.289 -11.376 -10.124 1 34.92 ? C3B CMC 101 F 1 HETATM 15 O O3B CMC . . . G 7 45.676 -11.694 -10.071 1 35.66 ? O3B CMC 101 F 1 HETATM 16 P P3B CMC . . . G 7 46.265 -13.097 -10.584 1 36.03 ? P3B CMC 101 F 1 HETATM 17 O O7A CMC . . . G 7 45.43 -14.113 -9.832 1 35.86 ? O7A CMC 101 F 1 HETATM 18 O O8A CMC . . . G 7 46.071 -13.068 -12.082 1 35.18 -1 O8A CMC 101 F 1 HETATM 19 O O9A CMC . . . G 7 47.712 -13.019 -10.163 1 35.53 ? O9A CMC 101 F 1 HETATM 20 C C4B CMC . . . G 7 44.095 -10.11 -10.957 1 34.49 ? C4B CMC 101 F 1 HETATM 21 O O4B CMC . . . G 7 43.973 -9.017 -10.038 1 34.42 ? O4B CMC 101 F 1 HETATM 22 C C5B CMC . . . G 7 42.859 -10.195 -11.846 1 33.38 ? C5B CMC 101 F 1 HETATM 23 O O5B CMC . . . G 7 41.717 -10.451 -11.032 1 32.19 ? O5B CMC 101 F 1 HETATM 24 P P1A CMC . . . G 7 40.228 -10.364 -11.629 1 31.19 ? P1A CMC 101 F 1 HETATM 25 O O1A CMC . . . G 7 39.355 -11.359 -10.9 1 31.04 -1 O1A CMC 101 F 1 HETATM 26 O O2A CMC . . . G 7 40.301 -10.434 -13.134 1 31.25 ? O2A CMC 101 F 1 HETATM 27 O O3A CMC . . . G 7 39.823 -8.873 -11.183 1 28.97 ? O3A CMC 101 F 1 HETATM 28 P P2A CMC . . . G 7 38.278 -8.462 -11.141 1 26.87 ? P2A CMC 101 F 1 HETATM 29 O O4A CMC . . . G 7 37.814 -8.68 -9.727 1 27.72 -1 O4A CMC 101 F 1 HETATM 30 O O5A CMC . . . G 7 37.612 -9.175 -12.28 1 27.12 ? O5A CMC 101 F 1 HETATM 31 O O6A CMC . . . G 7 38.286 -6.89 -11.451 1 26.9 ? O6A CMC 101 F 1 HETATM 32 C CBP CMC . . . G 7 38.875 -4.599 -11.046 1 27.58 ? CBP CMC 101 F 1 HETATM 33 C CCP CMC . . . G 7 39.38 -6.04 -11.096 1 27.03 ? CCP CMC 101 F 1 HETATM 34 C CDP CMC . . . G 7 40.015 -3.655 -10.678 1 27.73 ? CDP CMC 101 F 1 HETATM 35 C CEP CMC . . . G 7 38.34 -4.241 -12.428 1 28.17 ? CEP CMC 101 F 1 HETATM 36 C CAP CMC . . . G 7 37.756 -4.548 -10.014 1 27.66 ? CAP CMC 101 F 1 HETATM 37 O OAP CMC . . . G 7 38.314 -4.81 -8.723 1 27.73 ? OAP CMC 101 F 1 HETATM 38 C C9P CMC . . . G 7 36.963 -3.273 -10.037 1 27.98 ? C9P CMC 101 F 1 HETATM 39 O O9P CMC . . . G 7 36.008 -3.209 -10.789 1 29.41 ? O9P CMC 101 F 1 HETATM 40 N N8P CMC . . . G 7 37.28 -2.317 -9.28 1 27.83 ? N8P CMC 101 F 1 HETATM 41 C C7P CMC . . . G 7 36.592 -1.029 -9.152 1 27.48 ? C7P CMC 101 F 1 HETATM 42 C C6P CMC . . . G 7 36.725 -0.21 -10.432 1 27.37 ? C6P CMC 101 F 1 HETATM 43 C C5P CMC . . . G 7 38.14 0.268 -10.592 1 27.4 ? C5P CMC 101 F 1 HETATM 44 O O5P CMC . . . G 7 38.792 0.629 -9.626 1 26.92 ? O5P CMC 101 F 1 HETATM 45 N N4P CMC . . . G 7 38.607 0.28 -11.758 1 27.71 ? N4P CMC 101 F 1 HETATM 46 C C3P CMC . . . G 7 39.952 0.723 -12.064 1 27.74 ? C3P CMC 101 F 1 HETATM 47 C C2P CMC . . . G 7 40.213 0.453 -13.528 1 27.42 ? C2P CMC 101 F 1 HETATM 48 S S1P CMC . . . G 7 41.58 1.449 -14.018 1 27.69 ? S1P CMC 101 F 1 HETATM 49 C C1 CMC . . . G 7 41.432 1.732 -15.756 1 26.69 ? C1 CMC 101 F 1 HETATM 50 C C2 CMC . . . G 7 40.268 2.664 -15.944 1 26.17 ? C2 CMC 101 F 1 HETATM 51 O O21 CMC . . . G 7 39.155 2.199 -16.1 1 26.2 ? O21 CMC 101 F 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 51 #