data_4XPD # _model_server_result.job_id st1jHlFJB61NoYEyHYGp1Q _model_server_result.datetime_utc '2024-11-27 03:10:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xpd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":201}' # _entry.id 4XPD # _exptl.entry_id 4XPD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 809.571 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETYL COENZYME *A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XPD _cell.length_a 85.564 _cell.length_b 113.649 _cell.length_c 146.721 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XPD _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id D _struct_conn.ptnr1_label_atom_id N _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 1 _struct_conn.ptnr1_auth_asym_id F _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 1 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id G _struct_conn.ptnr2_label_atom_id C2 _struct_conn.ptnr2_label_comp_id CMC _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id F _struct_conn.ptnr2_auth_comp_id CMC _struct_conn.ptnr2_auth_seq_id 101 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.325 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C23 H38 N7 O17 P3 S' _chem_comp.formula_weight 809.571 _chem_comp.id ACO _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETYL COENZYME *A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A ACO sing 1 n y N1A C6A ACO doub 2 n y C2A N3A ACO doub 3 n y C2A H2A ACO sing 4 n n N3A C4A ACO sing 5 n y C4A C5A ACO doub 6 n y C4A N9A ACO sing 7 n y C5A C6A ACO sing 8 n y C5A N7A ACO sing 9 n y C6A N6A ACO sing 10 n n N6A H61A ACO sing 11 n n N6A H62A ACO sing 12 n n N7A C8A ACO doub 13 n y C8A N9A ACO sing 14 n y C8A H8A ACO sing 15 n n N9A C1B ACO sing 16 n n C1B C2B ACO sing 17 n n C1B O4B ACO sing 18 n n C1B H1B ACO sing 19 n n C2B O2B ACO sing 20 n n C2B C3B ACO sing 21 n n C2B H2B ACO sing 22 n n O2B HO2A ACO sing 23 n n C3B O3B ACO sing 24 n n C3B C4B ACO sing 25 n n C3B H3B ACO sing 26 n n O3B P3B ACO sing 27 n n P3B O7A ACO doub 28 n n P3B O8A ACO sing 29 n n P3B O9A ACO sing 30 n n O8A HOA8 ACO sing 31 n n O9A HOA9 ACO sing 32 n n C4B O4B ACO sing 33 n n C4B C5B ACO sing 34 n n C4B H4B ACO sing 35 n n C5B O5B ACO sing 36 n n C5B H51A ACO sing 37 n n C5B H52A ACO sing 38 n n O5B P1A ACO sing 39 n n P1A O1A ACO doub 40 n n P1A O2A ACO sing 41 n n P1A O3A ACO sing 42 n n O2A HOA2 ACO sing 43 n n O3A P2A ACO sing 44 n n P2A O4A ACO doub 45 n n P2A O5A ACO sing 46 n n P2A O6A ACO sing 47 n n O5A HOA5 ACO sing 48 n n O6A CCP ACO sing 49 n n CBP CCP ACO sing 50 n n CBP CDP ACO sing 51 n n CBP CEP ACO sing 52 n n CBP CAP ACO sing 53 n n CCP H121 ACO sing 54 n n CCP H122 ACO sing 55 n n CDP H131 ACO sing 56 n n CDP H132 ACO sing 57 n n CDP H133 ACO sing 58 n n CEP H141 ACO sing 59 n n CEP H142 ACO sing 60 n n CEP H143 ACO sing 61 n n CAP OAP ACO sing 62 n n CAP C9P ACO sing 63 n n CAP H10 ACO sing 64 n n OAP HO1 ACO sing 65 n n C9P O9P ACO doub 66 n n C9P N8P ACO sing 67 n n N8P C7P ACO sing 68 n n N8P HN8 ACO sing 69 n n C7P C6P ACO sing 70 n n C7P H71 ACO sing 71 n n C7P H72 ACO sing 72 n n C6P C5P ACO sing 73 n n C6P H61 ACO sing 74 n n C6P H62 ACO sing 75 n n C5P O5P ACO doub 76 n n C5P N4P ACO sing 77 n n N4P C3P ACO sing 78 n n N4P HN4 ACO sing 79 n n C3P C2P ACO sing 80 n n C3P H31 ACO sing 81 n n C3P H32 ACO sing 82 n n C2P S1P ACO sing 83 n n C2P H21 ACO sing 84 n n C2P H22 ACO sing 85 n n S1P C ACO sing 86 n n C O ACO doub 87 n n C CH3 ACO sing 88 n n CH3 HH31 ACO sing 89 n n CH3 HH32 ACO sing 90 n n CH3 HH33 ACO sing 91 n n # _atom_sites.entry_id 4XPD _atom_sites.fract_transf_matrix[1][1] 0.011687 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008799 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006816 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 G4P A 1 901 1 G4P G4P . F 6 ACO C 1 201 1 ACO BCO . G 7 CMC F 1 101 1 CMC ACO . H 8 HOH A 1 1001 1 HOH HOH . H 8 HOH A 2 1002 2 HOH HOH . H 8 HOH A 3 1003 3 HOH HOH . H 8 HOH A 4 1004 6 HOH HOH . H 8 HOH A 5 1005 7 HOH HOH . H 8 HOH A 6 1006 8 HOH HOH . H 8 HOH A 7 1007 9 HOH HOH . H 8 HOH A 8 1008 10 HOH HOH . H 8 HOH A 9 1009 11 HOH HOH . I 8 HOH B 1 301 4 HOH HOH . I 8 HOH B 2 302 5 HOH HOH . I 8 HOH B 3 303 12 HOH HOH . J 8 HOH C 1 301 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A ACO . . . F 6 55.28 -21.232 12.751 1 64.16 ? N1A ACO 201 C 1 HETATM 2 C C2A ACO . . . F 6 55.818 -20.92 13.947 1 63.07 ? C2A ACO 201 C 1 HETATM 3 N N3A ACO . . . F 6 56.708 -19.926 14.09 1 62.45 ? N3A ACO 201 C 1 HETATM 4 C C4A ACO . . . F 6 57.113 -19.181 13.029 1 63.28 ? C4A ACO 201 C 1 HETATM 5 C C5A ACO . . . F 6 56.571 -19.452 11.696 1 64.62 ? C5A ACO 201 C 1 HETATM 6 C C6A ACO . . . F 6 55.595 -20.567 11.611 1 64.69 ? C6A ACO 201 C 1 HETATM 7 N N6A ACO . . . F 6 55.027 -20.909 10.431 1 66.93 ? N6A ACO 201 C 1 HETATM 8 N N7A ACO . . . F 6 57.153 -18.562 10.859 1 64.91 ? N7A ACO 201 C 1 HETATM 9 C C8A ACO . . . F 6 57.997 -17.784 11.595 1 63.93 ? C8A ACO 201 C 1 HETATM 10 N N9A ACO . . . F 6 57.963 -18.171 12.888 1 63.23 ? N9A ACO 201 C 1 HETATM 11 C C1B ACO . . . F 6 58.679 -17.645 14.066 1 62.57 ? C1B ACO 201 C 1 HETATM 12 C C2B ACO . . . F 6 59.24 -16.239 13.915 1 63.34 ? C2B ACO 201 C 1 HETATM 13 O O2B ACO . . . F 6 60.674 -16.219 13.805 1 62.19 ? O2B ACO 201 C 1 HETATM 14 C C3B ACO . . . F 6 58.723 -15.587 15.184 1 63.74 ? C3B ACO 201 C 1 HETATM 15 O O3B ACO . . . F 6 59.642 -15.868 16.254 1 68.15 ? O3B ACO 201 C 1 HETATM 16 P P3B ACO . . . F 6 59.353 -16.566 17.695 1 73.21 ? P3B ACO 201 C 1 HETATM 17 O O7A ACO . . . F 6 60.697 -17.146 18.079 1 72.53 ? O7A ACO 201 C 1 HETATM 18 O O8A ACO . . . F 6 58.308 -17.645 17.516 1 72.5 ? O8A ACO 201 C 1 HETATM 19 O O9A ACO . . . F 6 58.909 -15.407 18.559 1 72.19 ? O9A ACO 201 C 1 HETATM 20 C C4B ACO . . . F 6 57.36 -16.236 15.367 1 59.46 ? C4B ACO 201 C 1 HETATM 21 O O4B ACO . . . F 6 57.678 -17.595 15.095 1 61.3 ? O4B ACO 201 C 1 HETATM 22 C C5B ACO . . . F 6 56.259 -15.785 14.408 1 54.88 ? C5B ACO 201 C 1 HETATM 23 O O5B ACO . . . F 6 56.24 -14.37 14.231 1 48.98 ? O5B ACO 201 C 1 HETATM 24 P P1A ACO . . . F 6 55.598 -13.734 12.899 1 44.38 ? P1A ACO 201 C 1 HETATM 25 O O1A ACO . . . F 6 54.707 -14.751 12.227 1 43.45 ? O1A ACO 201 C 1 HETATM 26 O O2A ACO . . . F 6 56.699 -13.088 12.102 1 43.81 ? O2A ACO 201 C 1 HETATM 27 O O3A ACO . . . F 6 54.695 -12.575 13.543 1 41.96 ? O3A ACO 201 C 1 HETATM 28 P P2A ACO . . . F 6 53.109 -12.733 13.759 1 39.26 ? P2A ACO 201 C 1 HETATM 29 O O4A ACO . . . F 6 52.421 -12.614 12.421 1 40.22 ? O4A ACO 201 C 1 HETATM 30 O O5A ACO . . . F 6 52.834 -13.91 14.659 1 39.65 ? O5A ACO 201 C 1 HETATM 31 O O6A ACO . . . F 6 52.818 -11.391 14.573 1 39.24 ? O6A ACO 201 C 1 HETATM 32 C CBP ACO . . . F 6 52.827 -10.058 16.551 1 39.8 ? CBP ACO 201 C 1 HETATM 33 C CCP ACO . . . F 6 53.59 -11.074 15.722 1 39.45 ? CCP ACO 201 C 1 HETATM 34 C CDP ACO . . . F 6 53.532 -9.908 17.892 1 39.28 ? CDP ACO 201 C 1 HETATM 35 C CEP ACO . . . F 6 52.825 -8.737 15.788 1 39.02 ? CEP ACO 201 C 1 HETATM 36 C CAP ACO . . . F 6 51.388 -10.555 16.75 1 41.28 ? CAP ACO 201 C 1 HETATM 37 O OAP ACO . . . F 6 51.406 -11.938 17.14 1 41.48 ? OAP ACO 201 C 1 HETATM 38 C C9P ACO . . . F 6 50.652 -9.797 17.814 1 42.56 ? C9P ACO 201 C 1 HETATM 39 O O9P ACO . . . F 6 50.51 -10.334 18.901 1 43.33 ? O9P ACO 201 C 1 HETATM 40 N N8P ACO . . . F 6 50.177 -8.584 17.515 1 42.87 ? N8P ACO 201 C 1 HETATM 41 C C7P ACO . . . F 6 49.4 -7.77 18.444 1 42.7 ? C7P ACO 201 C 1 HETATM 42 C C6P ACO . . . F 6 49.89 -7.751 19.898 1 43.5 ? C6P ACO 201 C 1 HETATM 43 C C5P ACO . . . F 6 50.559 -6.432 20.159 1 44.85 ? C5P ACO 201 C 1 HETATM 44 O O5P ACO . . . F 6 50.053 -5.648 20.931 1 47.03 ? O5P ACO 201 C 1 HETATM 45 N N4P ACO . . . F 6 51.626 -6.182 19.416 1 46.1 ? N4P ACO 201 C 1 HETATM 46 C C3P ACO . . . F 6 52.109 -4.845 19.135 1 46.46 ? C3P ACO 201 C 1 HETATM 47 C C2P ACO . . . F 6 52.516 -3.907 20.26 1 46.73 ? C2P ACO 201 C 1 HETATM 48 S S1P ACO . . . F 6 52.183 -2.309 19.595 1 47.84 ? S1P ACO 201 C 1 HETATM 49 C C ACO . . . F 6 53.055 -1.089 20.314 1 46.42 ? C ACO 201 C 1 HETATM 50 O O ACO . . . F 6 53.986 -0.603 19.7 1 46.29 ? O ACO 201 C 1 HETATM 51 C CH3 ACO . . . F 6 52.66 -0.605 21.676 1 46.33 ? CH3 ACO 201 C 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 51 #