data_4XPF # _model_server_result.job_id ahkP0k1WnwzrQwYeEx3BZg _model_server_result.datetime_utc '2025-07-25 15:07:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xpf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":701}' # _entry.id 4XPF # _exptl.entry_id 4XPF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 482.562 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description DECYL-BETA-D-MALTOPYRANOSIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XPF _cell.length_a 97.415 _cell.length_b 140.312 _cell.length_c 166.962 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XPF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 129 A CYS 148 1_555 A SG CYS 138 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 B SG CYS 45 L CYS 23 1_555 B SG CYS 111 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 B SG CYS 157 L CYS 135 1_555 B SG CYS 217 L CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 C SG CYS 41 H CYS 22 1_555 C SG CYS 115 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf5 C SG CYS 165 H CYS 146 1_555 C SG CYS 220 H CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 C CD1 LEU 149 H LEU 130 1_555 C C GLY 164 H GLY 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.102 ? covale ? covale2 C CD1 LEU 149 H LEU 130 1_555 C O GLY 164 H GLY 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.216 ? metalc ? metalc1 A O GLY 23 A GLY 42 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc2 A O ALA 25 A ALA 44 1_555 I NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.762 ? metalc ? metalc3 A O VAL 26 A VAL 45 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc4 A OD1 ASN 30 A ASN 49 1_555 I NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.087 ? metalc ? metalc5 A O SER 258 A SER 320 1_555 I NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.012 ? metalc ? metalc6 A OG SER 258 A SER 320 1_555 I NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc7 A O LEU 355 A LEU 417 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc8 A OD1 ASP 358 A ASP 420 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc9 A OG SER 359 A SER 421 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? # _chem_comp.formula 'C22 H42 O11' _chem_comp.formula_weight 482.562 _chem_comp.id DMU _chem_comp.mon_nstd_flag . _chem_comp.name DECYL-BETA-D-MALTOPYRANOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms DECYLMALTOSIDE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C40 C37 DMU sing 202 n n C40 C43 DMU sing 203 n n C37 C34 DMU sing 204 n n C34 C31 DMU sing 205 n n C31 C28 DMU sing 206 n n C28 C25 DMU sing 207 n n C22 C25 DMU sing 208 n n C22 C19 DMU sing 209 n n O61 C57 DMU sing 210 n n O4 C7 DMU sing 211 n n C18 C19 DMU sing 212 n n C18 O16 DMU sing 213 n n O5 C6 DMU sing 214 n n O5 C4 DMU sing 215 n n C57 C4 DMU sing 216 n n C6 O16 DMU sing 217 n n C6 C1 DMU sing 218 n n C7 C5 DMU sing 219 n n C7 C8 DMU sing 220 n n C4 C3 DMU sing 221 n n O1 C10 DMU sing 222 n n O1 C9 DMU sing 223 n n C10 C5 DMU sing 224 n n C10 O7 DMU sing 225 n n C5 O3 DMU sing 226 n n O49 C1 DMU sing 227 n n C8 C9 DMU sing 228 n n C8 O2 DMU sing 229 n n C1 C2 DMU sing 230 n n C11 C9 DMU sing 231 n n C11 O6 DMU sing 232 n n C3 O7 DMU sing 233 n n C3 C2 DMU sing 234 n n C2 O55 DMU sing 235 n n C1 H1 DMU sing 236 n n C2 H2 DMU sing 237 n n C3 H3 DMU sing 238 n n C4 H4 DMU sing 239 n n C6 H5 DMU sing 240 n n C18 H6 DMU sing 241 n n C18 H7 DMU sing 242 n n C19 H8 DMU sing 243 n n C19 H9 DMU sing 244 n n C22 H10 DMU sing 245 n n C22 H11 DMU sing 246 n n C25 H12 DMU sing 247 n n C25 H13 DMU sing 248 n n C28 H14 DMU sing 249 n n C28 H15 DMU sing 250 n n C31 H16 DMU sing 251 n n C31 H17 DMU sing 252 n n C34 H18 DMU sing 253 n n C34 H19 DMU sing 254 n n C37 H20 DMU sing 255 n n C37 H21 DMU sing 256 n n C40 H22 DMU sing 257 n n C40 H23 DMU sing 258 n n C43 H24 DMU sing 259 n n C43 H25 DMU sing 260 n n C43 H26 DMU sing 261 n n O49 H27 DMU sing 262 n n O55 H28 DMU sing 263 n n C57 H29 DMU sing 264 n n C57 H30 DMU sing 265 n n O61 H31 DMU sing 266 n n C5 H32 DMU sing 267 n n C7 H33 DMU sing 268 n n C8 H34 DMU sing 269 n n C9 H35 DMU sing 270 n n C10 H36 DMU sing 271 n n O2 H37 DMU sing 272 n n O3 H38 DMU sing 273 n n O4 H39 DMU sing 274 n n C11 H40 DMU sing 275 n n C11 H41 DMU sing 276 n n O6 H42 DMU sing 277 n n # _atom_sites.entry_id 4XPF _atom_sites.fract_transf_matrix[1][1] 0.010265 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007127 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005989 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 DMU A 1 701 1 DMU DMU . E 5 P4G A 1 702 1 P4G P4G . F 6 42F A 1 703 1 42F DUM . G 7 CLR A 1 704 1 CLR CLR . H 7 CLR A 1 705 2 CLR CLR . I 8 NA A 1 706 1 NA NA . J 8 NA A 1 707 2 NA NA . K 9 CL A 1 708 3 CL CL . L 10 HOH A 1 801 5 HOH HOH . M 10 HOH L 1 301 3 HOH HOH . M 10 HOH L 2 302 6 HOH HOH . M 10 HOH L 3 303 4 HOH HOH . N 10 HOH H 1 301 1 HOH HOH . N 10 HOH H 2 302 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DMU . . . D 4 0.022 -1.336 -2.476 1 138.51 ? C1 DMU 701 A 1 HETATM 2 C C2 DMU . . . D 4 1.455 -0.842 -2.631 1 137.71 ? C2 DMU 701 A 1 HETATM 3 C C3 DMU . . . D 4 2.122 -0.876 -1.266 1 135.62 ? C3 DMU 701 A 1 HETATM 4 C C4 DMU . . . D 4 2.286 -2.328 -0.837 1 135.67 ? C4 DMU 701 A 1 HETATM 5 O O5 DMU . . . D 4 1.286 -3.146 -1.449 1 140.83 ? O5 DMU 701 A 1 HETATM 6 C C6 DMU . . . D 4 -0.01 -2.551 -1.552 1 136.32 ? C6 DMU 701 A 1 HETATM 7 O O7 DMU . . . D 4 3.397 -0.241 -1.316 1 132.09 ? O7 DMU 701 A 1 HETATM 8 O O16 DMU . . . D 4 -0.479 -2.167 -0.263 1 131.47 ? O16 DMU 701 A 1 HETATM 9 C C18 DMU . . . D 4 -1.902 -2.192 -0.193 1 127.12 ? C18 DMU 701 A 1 HETATM 10 C C19 DMU . . . D 4 -2.371 -3.606 0.132 1 122.19 ? C19 DMU 701 A 1 HETATM 11 C C22 DMU . . . D 4 -1.738 -4.129 1.418 1 118.65 ? C22 DMU 701 A 1 HETATM 12 C C25 DMU . . . D 4 -2.449 -5.393 1.884 1 121.73 ? C25 DMU 701 A 1 HETATM 13 C C28 DMU . . . D 4 -1.689 -6.066 3.02 1 122.27 ? C28 DMU 701 A 1 HETATM 14 C C31 DMU . . . D 4 -0.839 -7.231 2.515 1 135.95 ? C31 DMU 701 A 1 HETATM 15 C C34 DMU . . . D 4 -1.693 -8.463 2.217 1 132.6 ? C34 DMU 701 A 1 HETATM 16 C C37 DMU . . . D 4 -1.025 -9.745 2.712 1 128.32 ? C37 DMU 701 A 1 HETATM 17 C C40 DMU . . . D 4 -2.073 -10.816 3.013 1 122.83 ? C40 DMU 701 A 1 HETATM 18 C C43 DMU . . . D 4 -1.541 -11.886 3.942 1 105.99 ? C43 DMU 701 A 1 HETATM 19 O O49 DMU . . . D 4 -0.525 -1.676 -3.756 1 138.21 ? O49 DMU 701 A 1 HETATM 20 O O55 DMU . . . D 4 1.468 0.491 -3.149 1 133.79 ? O55 DMU 701 A 1 HETATM 21 C C57 DMU . . . D 4 2.255 -2.499 0.676 1 129.73 ? C57 DMU 701 A 1 HETATM 22 O O61 DMU . . . D 4 2.288 -3.898 0.976 1 133.31 ? O61 DMU 701 A 1 HETATM 23 C C5 DMU . . . D 4 5.664 -1.029 -1.139 1 140.16 ? C5 DMU 701 A 1 HETATM 24 C C7 DMU . . . D 4 6.861 -0.763 -2.041 1 134.35 ? C7 DMU 701 A 1 HETATM 25 C C8 DMU . . . D 4 6.8 -1.633 -3.292 1 143.21 ? C8 DMU 701 A 1 HETATM 26 C C9 DMU . . . D 4 5.439 -1.515 -3.975 1 152.92 ? C9 DMU 701 A 1 HETATM 27 O O1 DMU . . . D 4 4.631 -0.586 -3.256 1 142.2 ? O1 DMU 701 A 1 HETATM 28 C C10 DMU . . . D 4 4.372 -1.063 -1.943 1 137.36 ? C10 DMU 701 A 1 HETATM 29 O O2 DMU . . . D 4 7.822 -1.228 -4.209 1 143.37 ? O2 DMU 701 A 1 HETATM 30 O O3 DMU . . . D 4 5.577 -0.01 -0.141 1 140.39 ? O3 DMU 701 A 1 HETATM 31 O O4 DMU . . . D 4 8.068 -1.037 -1.319 1 125.45 ? O4 DMU 701 A 1 HETATM 32 C C11 DMU . . . D 4 4.714 -2.86 -4.051 1 148.63 ? C11 DMU 701 A 1 HETATM 33 O O6 DMU . . . D 4 4.945 -3.5 -5.315 1 141.79 ? O6 DMU 701 A 1 # _model_server_stats.io_time_ms 37 _model_server_stats.parse_time_ms 34 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 1380 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 33 #