data_4XPF # _model_server_result.job_id RzIdUMAUh1kqG0SH6jebsg _model_server_result.datetime_utc '2024-11-24 08:12:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xpf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":702}' # _entry.id 4XPF # _exptl.entry_id 4XPF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 162.227 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XPF _cell.length_a 97.415 _cell.length_b 140.312 _cell.length_c 166.962 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XPF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 129 A CYS 148 1_555 A SG CYS 138 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 B SG CYS 45 L CYS 23 1_555 B SG CYS 111 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 B SG CYS 157 L CYS 135 1_555 B SG CYS 217 L CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 C SG CYS 41 H CYS 22 1_555 C SG CYS 115 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf5 C SG CYS 165 H CYS 146 1_555 C SG CYS 220 H CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 C CD1 LEU 149 H LEU 130 1_555 C C GLY 164 H GLY 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.102 ? covale ? covale2 C CD1 LEU 149 H LEU 130 1_555 C O GLY 164 H GLY 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.216 ? metalc ? metalc1 A O GLY 23 A GLY 42 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc2 A O ALA 25 A ALA 44 1_555 I NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.762 ? metalc ? metalc3 A O VAL 26 A VAL 45 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc4 A OD1 ASN 30 A ASN 49 1_555 I NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.087 ? metalc ? metalc5 A O SER 258 A SER 320 1_555 I NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.012 ? metalc ? metalc6 A OG SER 258 A SER 320 1_555 I NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc7 A O LEU 355 A LEU 417 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc8 A OD1 ASP 358 A ASP 420 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc9 A OG SER 359 A SER 421 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? # _chem_comp.formula 'C8 H18 O3' _chem_comp.formula_weight 162.227 _chem_comp.id P4G _chem_comp.mon_nstd_flag . _chem_comp.name 1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 C7 P4G sing 432 n n C8 H81 P4G sing 433 n n C8 H82 P4G sing 434 n n C8 H83 P4G sing 435 n n C7 O4 P4G sing 436 n n C7 H71 P4G sing 437 n n C7 H72 P4G sing 438 n n O4 C6 P4G sing 439 n n C6 C5 P4G sing 440 n n C6 H61 P4G sing 441 n n C6 H62 P4G sing 442 n n C5 O3 P4G sing 443 n n C5 H51 P4G sing 444 n n C5 H52 P4G sing 445 n n O3 C4 P4G sing 446 n n C4 C3 P4G sing 447 n n C4 H41 P4G sing 448 n n C4 H42 P4G sing 449 n n C3 O2 P4G sing 450 n n C3 H31 P4G sing 451 n n C3 H32 P4G sing 452 n n O2 C2 P4G sing 453 n n C2 C1 P4G sing 454 n n C2 H21 P4G sing 455 n n C2 H22 P4G sing 456 n n C1 H11 P4G sing 457 n n C1 H12 P4G sing 458 n n C1 H13 P4G sing 459 n n # _atom_sites.entry_id 4XPF _atom_sites.fract_transf_matrix[1][1] 0.010265 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007127 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005989 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 DMU A 1 701 1 DMU DMU . E 5 P4G A 1 702 1 P4G P4G . F 6 42F A 1 703 1 42F DUM . G 7 CLR A 1 704 1 CLR CLR . H 7 CLR A 1 705 2 CLR CLR . I 8 NA A 1 706 1 NA NA . J 8 NA A 1 707 2 NA NA . K 9 CL A 1 708 3 CL CL . L 10 HOH A 1 801 5 HOH HOH . M 10 HOH L 1 301 3 HOH HOH . M 10 HOH L 2 302 6 HOH HOH . M 10 HOH L 3 303 4 HOH HOH . N 10 HOH H 1 301 1 HOH HOH . N 10 HOH H 2 302 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 P4G . . . E 5 -10.251 12.49 32.305 1 122.47 ? C8 P4G 702 A 1 HETATM 2 C C7 P4G . . . E 5 -10.844 12.142 30.985 1 130.54 ? C7 P4G 702 A 1 HETATM 3 O O4 P4G . . . E 5 -10.825 10.727 30.808 1 130.12 ? O4 P4G 702 A 1 HETATM 4 C C6 P4G . . . E 5 -11.328 10.359 29.507 1 123.56 ? C6 P4G 702 A 1 HETATM 5 C C5 P4G . . . E 5 -10.414 9.323 28.862 1 129.73 ? C5 P4G 702 A 1 HETATM 6 O O3 P4G . . . E 5 -9.029 9.567 29.211 1 136.6 ? O3 P4G 702 A 1 HETATM 7 C C4 P4G . . . E 5 -8.147 8.531 28.785 1 121.82 ? C4 P4G 702 A 1 HETATM 8 C C3 P4G . . . E 5 -7.675 8.764 27.316 1 127.62 ? C3 P4G 702 A 1 HETATM 9 O O2 P4G . . . E 5 -6.232 8.781 27.291 1 132.55 ? O2 P4G 702 A 1 HETATM 10 C C2 P4G . . . E 5 -5.7 10.059 26.916 1 124.89 ? C2 P4G 702 A 1 HETATM 11 C C1 P4G . . . E 5 -5.936 11.063 28.019 1 114.33 ? C1 P4G 702 A 1 HETATM 12 H H81 P4G . . . E 5 -10.757 12.06 33.01 1 146.96 ? H81 P4G 702 A 1 HETATM 13 H H82 P4G . . . E 5 -10.276 13.455 32.429 1 146.96 ? H82 P4G 702 A 1 HETATM 14 H H83 P4G . . . E 5 -9.316 12.179 32.335 1 146.96 ? H83 P4G 702 A 1 HETATM 15 H H71 P4G . . . E 5 -10.334 12.558 30.286 1 156.65 ? H71 P4G 702 A 1 HETATM 16 H H72 P4G . . . E 5 -11.746 12.455 30.95 1 156.65 ? H72 P4G 702 A 1 HETATM 17 H H61 P4G . . . E 5 -12.231 9.98 29.603 1 148.28 ? H61 P4G 702 A 1 HETATM 18 H H62 P4G . . . E 5 -11.369 11.156 28.938 1 148.28 ? H62 P4G 702 A 1 HETATM 19 H H51 P4G . . . E 5 -10.672 8.426 29.173 1 155.68 ? H51 P4G 702 A 1 HETATM 20 H H52 P4G . . . E 5 -10.513 9.369 27.884 1 155.68 ? H52 P4G 702 A 1 HETATM 21 H H41 P4G . . . E 5 -7.364 8.514 29.375 1 146.19 ? H41 P4G 702 A 1 HETATM 22 H H42 P4G . . . E 5 -8.617 7.662 28.843 1 146.19 ? H42 P4G 702 A 1 HETATM 23 H H31 P4G . . . E 5 -8.024 9.634 26.985 1 153.14 ? H31 P4G 702 A 1 HETATM 24 H H32 P4G . . . E 5 -8.008 8.03 26.74 1 153.14 ? H32 P4G 702 A 1 HETATM 25 H H21 P4G . . . E 5 -6.147 10.37 26.089 1 149.87 ? H21 P4G 702 A 1 HETATM 26 H H22 P4G . . . E 5 -4.737 9.975 26.754 1 149.87 ? H22 P4G 702 A 1 HETATM 27 H H11 P4G . . . E 5 -5.628 11.94 27.731 1 137.19 ? H11 P4G 702 A 1 HETATM 28 H H12 P4G . . . E 5 -6.897 11.103 28.224 1 137.19 ? H12 P4G 702 A 1 HETATM 29 H H13 P4G . . . E 5 -5.443 10.791 28.817 1 137.19 ? H13 P4G 702 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 29 #