data_4XPF # _model_server_result.job_id XoaS2eV0TVGl7rlxyDz39A _model_server_result.datetime_utc '2025-04-28 12:07:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xpf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":705}' # _entry.id 4XPF # _exptl.entry_id 4XPF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.654 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XPF _cell.length_a 97.415 _cell.length_b 140.312 _cell.length_c 166.962 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XPF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 G N N ? 7 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 129 A CYS 148 1_555 A SG CYS 138 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 B SG CYS 45 L CYS 23 1_555 B SG CYS 111 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 B SG CYS 157 L CYS 135 1_555 B SG CYS 217 L CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 C SG CYS 41 H CYS 22 1_555 C SG CYS 115 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf5 C SG CYS 165 H CYS 146 1_555 C SG CYS 220 H CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 C CD1 LEU 149 H LEU 130 1_555 C C GLY 164 H GLY 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.102 ? covale ? covale2 C CD1 LEU 149 H LEU 130 1_555 C O GLY 164 H GLY 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.216 ? metalc ? metalc1 A O GLY 23 A GLY 42 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc2 A O ALA 25 A ALA 44 1_555 I NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.762 ? metalc ? metalc3 A O VAL 26 A VAL 45 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc4 A OD1 ASN 30 A ASN 49 1_555 I NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.087 ? metalc ? metalc5 A O SER 258 A SER 320 1_555 I NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.012 ? metalc ? metalc6 A OG SER 258 A SER 320 1_555 I NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc7 A O LEU 355 A LEU 417 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc8 A OD1 ASP 358 A ASP 420 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc9 A OG SER 359 A SER 421 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 112 n n C1 C10 CLR sing 113 n n C1 H11 CLR sing 114 n n C1 H12 CLR sing 115 n n C2 C3 CLR sing 116 n n C2 H21 CLR sing 117 n n C2 H22 CLR sing 118 n n C3 C4 CLR sing 119 n n C3 O1 CLR sing 120 n n C3 H3 CLR sing 121 n n C4 C5 CLR sing 122 n n C4 H41 CLR sing 123 n n C4 H42 CLR sing 124 n n C5 C6 CLR doub 125 n n C5 C10 CLR sing 126 n n C6 C7 CLR sing 127 n n C6 H6 CLR sing 128 n n C7 C8 CLR sing 129 n n C7 H71 CLR sing 130 n n C7 H72 CLR sing 131 n n C8 C9 CLR sing 132 n n C8 C14 CLR sing 133 n n C8 H8 CLR sing 134 n n C9 C10 CLR sing 135 n n C9 C11 CLR sing 136 n n C9 H9 CLR sing 137 n n C10 C19 CLR sing 138 n n C11 C12 CLR sing 139 n n C11 H111 CLR sing 140 n n C11 H112 CLR sing 141 n n C12 C13 CLR sing 142 n n C12 H121 CLR sing 143 n n C12 H122 CLR sing 144 n n C13 C14 CLR sing 145 n n C13 C17 CLR sing 146 n n C13 C18 CLR sing 147 n n C14 C15 CLR sing 148 n n C14 H14 CLR sing 149 n n C15 C16 CLR sing 150 n n C15 H151 CLR sing 151 n n C15 H152 CLR sing 152 n n C16 C17 CLR sing 153 n n C16 H161 CLR sing 154 n n C16 H162 CLR sing 155 n n C17 C20 CLR sing 156 n n C17 H17 CLR sing 157 n n C18 H181 CLR sing 158 n n C18 H182 CLR sing 159 n n C18 H183 CLR sing 160 n n C19 H191 CLR sing 161 n n C19 H192 CLR sing 162 n n C19 H193 CLR sing 163 n n C20 C21 CLR sing 164 n n C20 C22 CLR sing 165 n n C20 H20 CLR sing 166 n n C21 H211 CLR sing 167 n n C21 H212 CLR sing 168 n n C21 H213 CLR sing 169 n n C22 C23 CLR sing 170 n n C22 H221 CLR sing 171 n n C22 H222 CLR sing 172 n n C23 C24 CLR sing 173 n n C23 H231 CLR sing 174 n n C23 H232 CLR sing 175 n n C24 C25 CLR sing 176 n n C24 H241 CLR sing 177 n n C24 H242 CLR sing 178 n n C25 C26 CLR sing 179 n n C25 C27 CLR sing 180 n n C25 H25 CLR sing 181 n n C26 H261 CLR sing 182 n n C26 H262 CLR sing 183 n n C26 H263 CLR sing 184 n n C27 H271 CLR sing 185 n n C27 H272 CLR sing 186 n n C27 H273 CLR sing 187 n n O1 H1 CLR sing 188 n n # _atom_sites.entry_id 4XPF _atom_sites.fract_transf_matrix[1][1] 0.010265 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007127 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005989 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 DMU A 1 701 1 DMU DMU . E 5 P4G A 1 702 1 P4G P4G . F 6 42F A 1 703 1 42F DUM . G 7 CLR A 1 704 1 CLR CLR . H 7 CLR A 1 705 2 CLR CLR . I 8 NA A 1 706 1 NA NA . J 8 NA A 1 707 2 NA NA . K 9 CL A 1 708 3 CL CL . L 10 HOH A 1 801 5 HOH HOH . M 10 HOH L 1 301 3 HOH HOH . M 10 HOH L 2 302 6 HOH HOH . M 10 HOH L 3 303 4 HOH HOH . N 10 HOH H 1 301 1 HOH HOH . N 10 HOH H 2 302 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . H 7 5.719 -17.563 34.474 1 107.99 ? C1 CLR 705 A 1 HETATM 2 C C2 CLR . . . H 7 4.612 -18.396 35.11 1 112.11 ? C2 CLR 705 A 1 HETATM 3 C C3 CLR . . . H 7 4.621 -18.202 36.622 1 119.95 ? C3 CLR 705 A 1 HETATM 4 C C4 CLR . . . H 7 4.29 -16.746 36.921 1 126.34 ? C4 CLR 705 A 1 HETATM 5 C C5 CLR . . . H 7 5.116 -15.788 36.091 1 121.39 ? C5 CLR 705 A 1 HETATM 6 C C6 CLR . . . H 7 5.504 -14.651 36.69 1 123.7 ? C6 CLR 705 A 1 HETATM 7 C C7 CLR . . . H 7 6.512 -13.701 36.094 1 126.41 ? C7 CLR 705 A 1 HETATM 8 C C8 CLR . . . H 7 6.496 -13.802 34.579 1 121.7 ? C8 CLR 705 A 1 HETATM 9 C C9 CLR . . . H 7 6.636 -15.265 34.187 1 119.83 ? C9 CLR 705 A 1 HETATM 10 C C10 CLR . . . H 7 5.428 -16.078 34.639 1 114.49 ? C10 CLR 705 A 1 HETATM 11 C C11 CLR . . . H 7 6.918 -15.428 32.692 1 116.45 ? C11 CLR 705 A 1 HETATM 12 C C12 CLR . . . H 7 8.175 -14.664 32.274 1 108.01 ? C12 CLR 705 A 1 HETATM 13 C C13 CLR . . . H 7 7.932 -13.19 32.565 1 112.12 ? C13 CLR 705 A 1 HETATM 14 C C14 CLR . . . H 7 7.689 -13.028 34.05 1 117.98 ? C14 CLR 705 A 1 HETATM 15 C C15 CLR . . . H 7 7.682 -11.52 34.276 1 114.8 ? C15 CLR 705 A 1 HETATM 16 C C16 CLR . . . H 7 8.708 -11.007 33.263 1 115 ? C16 CLR 705 A 1 HETATM 17 C C17 CLR . . . H 7 9.108 -12.222 32.42 1 111.51 ? C17 CLR 705 A 1 HETATM 18 C C18 CLR . . . H 7 6.7 -12.702 31.795 1 110.05 ? C18 CLR 705 A 1 HETATM 19 C C19 CLR . . . H 7 4.212 -15.682 33.812 1 108.2 ? C19 CLR 705 A 1 HETATM 20 C C20 CLR . . . H 7 9.519 -11.808 31.016 1 103.1 ? C20 CLR 705 A 1 HETATM 21 C C21 CLR . . . H 7 9.531 -12.999 30.071 1 115.04 ? C21 CLR 705 A 1 HETATM 22 C C22 CLR . . . H 7 10.896 -11.161 31.091 1 87.96 ? C22 CLR 705 A 1 HETATM 23 C C23 CLR . . . H 7 10.879 -9.697 30.665 1 91.35 ? C23 CLR 705 A 1 HETATM 24 C C24 CLR . . . H 7 12.31 -9.177 30.54 1 98.8 ? C24 CLR 705 A 1 HETATM 25 C C25 CLR . . . H 7 12.414 -7.79 29.906 1 99.9 ? C25 CLR 705 A 1 HETATM 26 C C26 CLR . . . H 7 12.385 -7.849 28.384 1 95.44 ? C26 CLR 705 A 1 HETATM 27 C C27 CLR . . . H 7 13.681 -7.079 30.366 1 100.76 ? C27 CLR 705 A 1 HETATM 28 O O1 CLR . . . H 7 3.65 -19.055 37.256 1 102 ? O1 CLR 705 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #