data_4XPG # _model_server_result.job_id eNF8UUt0lHq_oUaooIPMMA _model_server_result.datetime_utc '2024-11-24 18:39:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xpg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":701}' # _entry.id 4XPG # _exptl.entry_id 4XPG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 277.334 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'methyl (1R,2S,3S,5S)-3-(4-fluorophenyl)-8-methyl-8-azabicyclo[3.2.1]octane-2-carboxylate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XPG _cell.length_a 97.11 _cell.length_b 140.08 _cell.length_c 167.44 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XPG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 129 A CYS 148 1_555 A SG CYS 138 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 B SG CYS 45 L CYS 23 1_555 B SG CYS 111 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 B SG CYS 157 L CYS 135 1_555 B SG CYS 217 L CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 C SG CYS 42 H CYS 22 1_555 C SG CYS 116 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf5 C SG CYS 166 H CYS 146 1_555 C SG CYS 221 H CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc1 A O GLY 23 A GLY 42 1_555 I NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc2 A O ALA 25 A ALA 44 1_555 H NA NA . A NA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? metalc ? metalc3 A O VAL 26 A VAL 45 1_555 I NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc4 A OD1 ASN 30 A ASN 49 1_555 H NA NA . A NA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.53 ? metalc ? metalc5 A O SER 258 A SER 320 1_555 H NA NA . A NA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? metalc ? metalc6 A OG SER 258 A SER 320 1_555 H NA NA . A NA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? metalc ? metalc7 A O LEU 355 A LEU 417 1_555 I NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc8 A OD1 ASP 358 A ASP 420 1_555 I NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc9 A OG SER 359 A SER 421 1_555 I NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? # _chem_comp.formula 'C16 H20 F N O2' _chem_comp.formula_weight 277.334 _chem_comp.id 42L _chem_comp.mon_nstd_flag . _chem_comp.name 'methyl (1R,2S,3S,5S)-3-(4-fluorophenyl)-8-methyl-8-azabicyclo[3.2.1]octane-2-carboxylate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 42L sing 1 n n C2 C1 42L sing 2 n n C3 C4 42L sing 3 n n C1 N 42L sing 4 n n C1 C7 42L sing 5 n n C N 42L sing 6 n n N C4 42L sing 7 n n C4 C5 42L sing 8 n n C7 C6 42L sing 9 n n C7 C8 42L sing 10 n n C6 C5 42L sing 11 n n C6 C10 42L sing 12 n n C15 C10 42L doub 13 n y C15 C14 42L sing 14 n y C8 O1 42L sing 15 n n C8 O 42L doub 16 n n C10 C11 42L sing 17 n y O1 C9 42L sing 18 n n C14 C13 42L doub 19 n y C11 C12 42L doub 20 n y C13 C12 42L sing 21 n y C13 F 42L sing 22 n n C12 H1 42L sing 23 n n C11 H2 42L sing 24 n n C14 H3 42L sing 25 n n C15 H4 42L sing 26 n n C6 H5 42L sing 27 n n C7 H6 42L sing 28 n n C9 H7 42L sing 29 n n C9 H8 42L sing 30 n n C9 H9 42L sing 31 n n C1 H10 42L sing 32 n n C5 H11 42L sing 33 n n C5 H12 42L sing 34 n n C4 H13 42L sing 35 n n C3 H14 42L sing 36 n n C3 H15 42L sing 37 n n C2 H16 42L sing 38 n n C2 H17 42L sing 39 n n C H19 42L sing 40 n n C H20 42L sing 41 n n C H21 42L sing 42 n n # _atom_sites.entry_id 4XPG _atom_sites.fract_transf_matrix[1][1] 0.010298 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007139 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005972 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 42L A 1 701 701 42L 42L . E 5 CLR A 1 702 702 CLR CLR . F 5 CLR A 1 703 703 CLR CLR . G 6 CL A 1 704 704 CL CL . H 7 NA A 1 705 705 NA NA . I 7 NA A 1 706 706 NA NA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 F F 42L . . . D 4 36.404 4.133 -25.144 1 67.21 ? F 42L 701 A 1 HETATM 2 C C13 42L . . . D 4 37.35 3.683 -25.987 1 61.69 ? C13 42L 701 A 1 HETATM 3 C C12 42L . . . D 4 38.66 3.523 -25.55 1 68.27 ? C12 42L 701 A 1 HETATM 4 C C11 42L . . . D 4 39.64 3.057 -26.421 1 74.11 ? C11 42L 701 A 1 HETATM 5 C C14 42L . . . D 4 37.014 3.379 -27.298 1 63.57 ? C14 42L 701 A 1 HETATM 6 C C15 42L . . . D 4 37.991 2.913 -28.166 1 65.27 ? C15 42L 701 A 1 HETATM 7 C C10 42L . . . D 4 39.304 2.754 -27.735 1 70.25 ? C10 42L 701 A 1 HETATM 8 C C6 42L . . . D 4 40.306 2.249 -28.708 1 70.84 ? C6 42L 701 A 1 HETATM 9 C C7 42L . . . D 4 40.006 0.781 -29.023 1 78.06 ? C7 42L 701 A 1 HETATM 10 C C8 42L . . . D 4 39.95 -0.073 -27.78 1 76.78 ? C8 42L 701 A 1 HETATM 11 O O1 42L . . . D 4 38.927 -1.094 -27.65 1 78.94 ? O1 42L 701 A 1 HETATM 12 C C9 42L . . . D 4 38.726 -1.706 -26.378 1 76.08 ? C9 42L 701 A 1 HETATM 13 O O 42L . . . D 4 40.741 0.052 -26.857 1 80.55 ? O 42L 701 A 1 HETATM 14 C C1 42L . . . D 4 41.015 0.266 -30.041 1 84.08 ? C1 42L 701 A 1 HETATM 15 C C5 42L . . . D 4 41.763 2.455 -28.277 1 68.57 ? C5 42L 701 A 1 HETATM 16 C C4 42L . . . D 4 42.726 1.815 -29.277 1 65.35 ? C4 42L 701 A 1 HETATM 17 C C3 42L . . . D 4 42.323 2.264 -30.672 1 67.39 ? C3 42L 701 A 1 HETATM 18 C C2 42L . . . D 4 41.213 1.315 -31.125 1 74.66 ? C2 42L 701 A 1 HETATM 19 N N 42L . . . D 4 42.294 0.436 -29.399 1 75.54 ? N 42L 701 A 1 HETATM 20 C C 42L . . . D 4 43.374 -0.337 -29.994 1 80.38 ? C 42L 701 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 228 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 20 #