data_4XPG # _model_server_result.job_id SnynANXJ4gSfqnnILj56kQ _model_server_result.datetime_utc '2024-11-24 18:21:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xpg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":702}' # _entry.id 4XPG # _exptl.entry_id 4XPG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.654 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XPG _cell.length_a 97.11 _cell.length_b 140.08 _cell.length_c 167.44 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XPG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 129 A CYS 148 1_555 A SG CYS 138 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 B SG CYS 45 L CYS 23 1_555 B SG CYS 111 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 B SG CYS 157 L CYS 135 1_555 B SG CYS 217 L CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 C SG CYS 42 H CYS 22 1_555 C SG CYS 116 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf5 C SG CYS 166 H CYS 146 1_555 C SG CYS 221 H CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc1 A O GLY 23 A GLY 42 1_555 I NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc2 A O ALA 25 A ALA 44 1_555 H NA NA . A NA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? metalc ? metalc3 A O VAL 26 A VAL 45 1_555 I NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc4 A OD1 ASN 30 A ASN 49 1_555 H NA NA . A NA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.53 ? metalc ? metalc5 A O SER 258 A SER 320 1_555 H NA NA . A NA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? metalc ? metalc6 A OG SER 258 A SER 320 1_555 H NA NA . A NA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? metalc ? metalc7 A O LEU 355 A LEU 417 1_555 I NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc8 A OD1 ASP 358 A ASP 420 1_555 I NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc9 A OG SER 359 A SER 421 1_555 I NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 112 n n C1 C10 CLR sing 113 n n C1 H11 CLR sing 114 n n C1 H12 CLR sing 115 n n C2 C3 CLR sing 116 n n C2 H21 CLR sing 117 n n C2 H22 CLR sing 118 n n C3 C4 CLR sing 119 n n C3 O1 CLR sing 120 n n C3 H3 CLR sing 121 n n C4 C5 CLR sing 122 n n C4 H41 CLR sing 123 n n C4 H42 CLR sing 124 n n C5 C6 CLR doub 125 n n C5 C10 CLR sing 126 n n C6 C7 CLR sing 127 n n C6 H6 CLR sing 128 n n C7 C8 CLR sing 129 n n C7 H71 CLR sing 130 n n C7 H72 CLR sing 131 n n C8 C9 CLR sing 132 n n C8 C14 CLR sing 133 n n C8 H8 CLR sing 134 n n C9 C10 CLR sing 135 n n C9 C11 CLR sing 136 n n C9 H9 CLR sing 137 n n C10 C19 CLR sing 138 n n C11 C12 CLR sing 139 n n C11 H111 CLR sing 140 n n C11 H112 CLR sing 141 n n C12 C13 CLR sing 142 n n C12 H121 CLR sing 143 n n C12 H122 CLR sing 144 n n C13 C14 CLR sing 145 n n C13 C17 CLR sing 146 n n C13 C18 CLR sing 147 n n C14 C15 CLR sing 148 n n C14 H14 CLR sing 149 n n C15 C16 CLR sing 150 n n C15 H151 CLR sing 151 n n C15 H152 CLR sing 152 n n C16 C17 CLR sing 153 n n C16 H161 CLR sing 154 n n C16 H162 CLR sing 155 n n C17 C20 CLR sing 156 n n C17 H17 CLR sing 157 n n C18 H181 CLR sing 158 n n C18 H182 CLR sing 159 n n C18 H183 CLR sing 160 n n C19 H191 CLR sing 161 n n C19 H192 CLR sing 162 n n C19 H193 CLR sing 163 n n C20 C21 CLR sing 164 n n C20 C22 CLR sing 165 n n C20 H20 CLR sing 166 n n C21 H211 CLR sing 167 n n C21 H212 CLR sing 168 n n C21 H213 CLR sing 169 n n C22 C23 CLR sing 170 n n C22 H221 CLR sing 171 n n C22 H222 CLR sing 172 n n C23 C24 CLR sing 173 n n C23 H231 CLR sing 174 n n C23 H232 CLR sing 175 n n C24 C25 CLR sing 176 n n C24 H241 CLR sing 177 n n C24 H242 CLR sing 178 n n C25 C26 CLR sing 179 n n C25 C27 CLR sing 180 n n C25 H25 CLR sing 181 n n C26 H261 CLR sing 182 n n C26 H262 CLR sing 183 n n C26 H263 CLR sing 184 n n C27 H271 CLR sing 185 n n C27 H272 CLR sing 186 n n C27 H273 CLR sing 187 n n O1 H1 CLR sing 188 n n # _atom_sites.entry_id 4XPG _atom_sites.fract_transf_matrix[1][1] 0.010298 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007139 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005972 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 42L A 1 701 701 42L 42L . E 5 CLR A 1 702 702 CLR CLR . F 5 CLR A 1 703 703 CLR CLR . G 6 CL A 1 704 704 CL CL . H 7 NA A 1 705 705 NA NA . I 7 NA A 1 706 706 NA NA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . E 5 54.827 17.725 -35.639 1 85.87 ? C1 CLR 702 A 1 HETATM 2 C C2 CLR . . . E 5 53.883 18.796 -36.168 1 89.3 ? C2 CLR 702 A 1 HETATM 3 C C3 CLR . . . E 5 52.881 18.168 -37.121 1 88.52 ? C3 CLR 702 A 1 HETATM 4 C C4 CLR . . . E 5 52.002 17.217 -36.323 1 87.05 ? C4 CLR 702 A 1 HETATM 5 C C5 CLR . . . E 5 52.847 16.208 -35.581 1 82.78 ? C5 CLR 702 A 1 HETATM 6 C C6 CLR . . . E 5 52.423 14.936 -35.555 1 83.97 ? C6 CLR 702 A 1 HETATM 7 C C7 CLR . . . E 5 53.379 13.788 -35.365 1 78.49 ? C7 CLR 702 A 1 HETATM 8 C C8 CLR . . . E 5 54.396 14.16 -34.304 1 77.54 ? C8 CLR 702 A 1 HETATM 9 C C9 CLR . . . E 5 55.076 15.475 -34.666 1 76.66 ? C9 CLR 702 A 1 HETATM 10 C C10 CLR . . . E 5 54.101 16.639 -34.85 1 77.16 ? C10 CLR 702 A 1 HETATM 11 C C11 CLR . . . E 5 56.178 15.82 -33.657 1 72.73 ? C11 CLR 702 A 1 HETATM 12 C C12 CLR . . . E 5 57.193 14.688 -33.483 1 70.61 ? C12 CLR 702 A 1 HETATM 13 C C13 CLR . . . E 5 56.485 13.389 -33.123 1 72.13 ? C13 CLR 702 A 1 HETATM 14 C C14 CLR . . . E 5 55.479 13.099 -34.216 1 78.26 ? C14 CLR 702 A 1 HETATM 15 C C15 CLR . . . E 5 55.049 11.659 -33.985 1 78.21 ? C15 CLR 702 A 1 HETATM 16 C C16 CLR . . . E 5 56.334 10.994 -33.49 1 74.05 ? C16 CLR 702 A 1 HETATM 17 C C17 CLR . . . E 5 57.32 12.111 -33.13 1 68.35 ? C17 CLR 702 A 1 HETATM 18 C C18 CLR . . . E 5 55.771 13.524 -31.781 1 69.52 ? C18 CLR 702 A 1 HETATM 19 C C19 CLR . . . E 5 53.679 17.184 -33.49 1 69.72 ? C19 CLR 702 A 1 HETATM 20 C C20 CLR . . . E 5 58.087 11.767 -31.852 1 60.01 ? C20 CLR 702 A 1 HETATM 21 C C21 CLR . . . E 5 59.256 12.706 -31.569 1 67.78 ? C21 CLR 702 A 1 HETATM 22 C C22 CLR . . . E 5 58.594 10.334 -31.968 1 69.75 ? C22 CLR 702 A 1 HETATM 23 C C23 CLR . . . E 5 59.635 9.982 -30.912 1 67.89 ? C23 CLR 702 A 1 HETATM 24 C C24 CLR . . . E 5 60.539 8.869 -31.43 1 66.97 ? C24 CLR 702 A 1 HETATM 25 C C25 CLR . . . E 5 60.748 7.788 -30.377 1 75.22 ? C25 CLR 702 A 1 HETATM 26 C C26 CLR . . . E 5 61.364 8.376 -29.115 1 70.64 ? C26 CLR 702 A 1 HETATM 27 C C27 CLR . . . E 5 61.604 6.652 -30.924 1 72.16 ? C27 CLR 702 A 1 HETATM 28 O O1 CLR . . . E 5 52.067 19.182 -37.722 1 77.78 ? O1 CLR 702 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 28 #