data_4XPH # _model_server_result.job_id 2wwxbuQlT2GW9Du6o2Yarw _model_server_result.datetime_utc '2024-11-23 09:46:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xph # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":601}' # _entry.id 4XPH # _exptl.entry_id 4XPH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 162.227 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XPH _cell.length_a 97.968 _cell.length_b 144.665 _cell.length_c 165.666 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XPH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 BGC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D BGC 1 B 1 BGC M 1 N9S 4 n D GLC 2 B 2 GLC M 1 N9S # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 124 A CYS 148 1_555 A SG CYS 133 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf2 B SG CYS 23 L CYS 23 1_555 B SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf3 B SG CYS 135 L CYS 135 1_555 B SG CYS 195 L CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 C SG CYS 22 H CYS 22 1_555 C SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf5 C SG CYS 146 H CYS 146 1_555 C SG CYS 201 H CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 D O4 BGC . B BGC 1 1_555 D C1 GLC . B GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.412 sing metalc ? metalc1 A O GLY 18 A GLY 42 1_555 H NA NA . A NA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc2 A O ALA 20 A ALA 44 1_555 G NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc3 A O VAL 21 A VAL 45 1_555 H NA NA . A NA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc4 A OD1 ASP 22 A ASP 46 1_555 G NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.877 ? metalc ? metalc5 A OD1 ASN 25 A ASN 49 1_555 G NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc6 A O SER 255 A SER 320 1_555 G NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? metalc ? metalc7 A OG SER 255 A SER 320 1_555 G NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc8 A OD1 ASN 287 A ASN 352 1_555 G NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.947 ? metalc ? metalc9 A O LEU 352 A LEU 417 1_555 H NA NA . A NA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc10 A OD1 ASP 355 A ASP 420 1_555 H NA NA . A NA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc11 A OG SER 356 A SER 421 1_555 H NA NA . A NA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc12 B O THR 22 L THR 22 1_555 L NA NA . L NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.973 ? metalc ? metalc13 B OG1 THR 103 L THR 103 1_555 L NA NA . L NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? # _chem_comp.formula 'C8 H18 O3' _chem_comp.formula_weight 162.227 _chem_comp.id P4G _chem_comp.mon_nstd_flag . _chem_comp.name 1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 C7 P4G sing 382 n n C8 H81 P4G sing 383 n n C8 H82 P4G sing 384 n n C8 H83 P4G sing 385 n n C7 O4 P4G sing 386 n n C7 H71 P4G sing 387 n n C7 H72 P4G sing 388 n n O4 C6 P4G sing 389 n n C6 C5 P4G sing 390 n n C6 H61 P4G sing 391 n n C6 H62 P4G sing 392 n n C5 O3 P4G sing 393 n n C5 H51 P4G sing 394 n n C5 H52 P4G sing 395 n n O3 C4 P4G sing 396 n n C4 C3 P4G sing 397 n n C4 H41 P4G sing 398 n n C4 H42 P4G sing 399 n n C3 O2 P4G sing 400 n n C3 H31 P4G sing 401 n n C3 H32 P4G sing 402 n n O2 C2 P4G sing 403 n n C2 C1 P4G sing 404 n n C2 H21 P4G sing 405 n n C2 H22 P4G sing 406 n n C1 H11 P4G sing 407 n n C1 H12 P4G sing 408 n n C1 H13 P4G sing 409 n n # _atom_sites.entry_id 4XPH _atom_sites.fract_transf_matrix[1][1] 0.010207 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006913 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006036 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 P4G A 1 601 1 P4G P4G . F 6 42J A 1 602 1 42J DUM . G 7 NA A 1 603 1 NA NA . H 7 NA A 1 604 2 NA NA . I 8 CL A 1 605 4 CL CL . J 9 CLR A 1 606 2 CLR CLR . K 9 CLR A 1 607 1 CLR CLR . L 7 NA L 1 301 3 NA NA . M 10 HOH A 1 701 1 HOH HOH . M 10 HOH A 2 702 12 HOH HOH . M 10 HOH A 3 703 15 HOH HOH . M 10 HOH A 4 704 9 HOH HOH . M 10 HOH A 5 705 2 HOH HOH . M 10 HOH A 6 706 10 HOH HOH . M 10 HOH A 7 707 13 HOH HOH . M 10 HOH A 8 708 14 HOH HOH . M 10 HOH A 9 709 11 HOH HOH . N 10 HOH L 1 401 7 HOH HOH . N 10 HOH L 2 402 6 HOH HOH . N 10 HOH L 3 403 8 HOH HOH . N 10 HOH L 4 404 5 HOH HOH . O 10 HOH H 1 301 4 HOH HOH . O 10 HOH H 2 302 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 P4G . . . E 5 131.88 138.066 29.506 1 124.17 ? C8 P4G 601 A 1 HETATM 2 C C7 P4G . . . E 5 132.602 138.92 28.492 1 135.58 ? C7 P4G 601 A 1 HETATM 3 O O4 P4G . . . E 5 132.333 140.291 28.752 1 135.89 ? O4 P4G 601 A 1 HETATM 4 C C6 P4G . . . E 5 133.531 141.013 28.996 1 130.08 ? C6 P4G 601 A 1 HETATM 5 C C5 P4G . . . E 5 133.243 142.108 30.01 1 139.66 ? C5 P4G 601 A 1 HETATM 6 O O3 P4G . . . E 5 132.486 143.139 29.385 1 144.79 ? O3 P4G 601 A 1 HETATM 7 C C4 P4G . . . E 5 131.683 143.845 30.321 1 138.57 ? C4 P4G 601 A 1 HETATM 8 C C3 P4G . . . E 5 132.512 144.948 30.957 1 142.11 ? C3 P4G 601 A 1 HETATM 9 O O2 P4G . . . E 5 131.631 145.927 31.494 1 139.25 ? O2 P4G 601 A 1 HETATM 10 C C2 P4G . . . E 5 132.205 147.228 31.466 1 139.29 ? C2 P4G 601 A 1 HETATM 11 C C1 P4G . . . E 5 131.342 148.141 30.625 1 137.58 ? C1 P4G 601 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 11 #