data_4XPH # _model_server_result.job_id CnAnWo1-O5jAp694yI50JA _model_server_result.datetime_utc '2024-11-21 14:33:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xph # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":606}' # _entry.id 4XPH # _exptl.entry_id 4XPH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.654 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XPH _cell.length_a 97.968 _cell.length_b 144.665 _cell.length_c 165.666 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XPH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 J N N ? 9 K N N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 BGC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D BGC 1 B 1 BGC M 1 N9S 4 n D GLC 2 B 2 GLC M 1 N9S # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 124 A CYS 148 1_555 A SG CYS 133 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf2 B SG CYS 23 L CYS 23 1_555 B SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf3 B SG CYS 135 L CYS 135 1_555 B SG CYS 195 L CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 C SG CYS 22 H CYS 22 1_555 C SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf5 C SG CYS 146 H CYS 146 1_555 C SG CYS 201 H CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 D O4 BGC . B BGC 1 1_555 D C1 GLC . B GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.412 sing metalc ? metalc1 A O GLY 18 A GLY 42 1_555 H NA NA . A NA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc2 A O ALA 20 A ALA 44 1_555 G NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc3 A O VAL 21 A VAL 45 1_555 H NA NA . A NA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc4 A OD1 ASP 22 A ASP 46 1_555 G NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.877 ? metalc ? metalc5 A OD1 ASN 25 A ASN 49 1_555 G NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc6 A O SER 255 A SER 320 1_555 G NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? metalc ? metalc7 A OG SER 255 A SER 320 1_555 G NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc8 A OD1 ASN 287 A ASN 352 1_555 G NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.947 ? metalc ? metalc9 A O LEU 352 A LEU 417 1_555 H NA NA . A NA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc10 A OD1 ASP 355 A ASP 420 1_555 H NA NA . A NA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc11 A OG SER 356 A SER 421 1_555 H NA NA . A NA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc12 B O THR 22 L THR 22 1_555 L NA NA . L NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.973 ? metalc ? metalc13 B OG1 THR 103 L THR 103 1_555 L NA NA . L NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 114 n n C1 C10 CLR sing 115 n n C1 H11 CLR sing 116 n n C1 H12 CLR sing 117 n n C2 C3 CLR sing 118 n n C2 H21 CLR sing 119 n n C2 H22 CLR sing 120 n n C3 C4 CLR sing 121 n n C3 O1 CLR sing 122 n n C3 H3 CLR sing 123 n n C4 C5 CLR sing 124 n n C4 H41 CLR sing 125 n n C4 H42 CLR sing 126 n n C5 C6 CLR doub 127 n n C5 C10 CLR sing 128 n n C6 C7 CLR sing 129 n n C6 H6 CLR sing 130 n n C7 C8 CLR sing 131 n n C7 H71 CLR sing 132 n n C7 H72 CLR sing 133 n n C8 C9 CLR sing 134 n n C8 C14 CLR sing 135 n n C8 H8 CLR sing 136 n n C9 C10 CLR sing 137 n n C9 C11 CLR sing 138 n n C9 H9 CLR sing 139 n n C10 C19 CLR sing 140 n n C11 C12 CLR sing 141 n n C11 H111 CLR sing 142 n n C11 H112 CLR sing 143 n n C12 C13 CLR sing 144 n n C12 H121 CLR sing 145 n n C12 H122 CLR sing 146 n n C13 C14 CLR sing 147 n n C13 C17 CLR sing 148 n n C13 C18 CLR sing 149 n n C14 C15 CLR sing 150 n n C14 H14 CLR sing 151 n n C15 C16 CLR sing 152 n n C15 H151 CLR sing 153 n n C15 H152 CLR sing 154 n n C16 C17 CLR sing 155 n n C16 H161 CLR sing 156 n n C16 H162 CLR sing 157 n n C17 C20 CLR sing 158 n n C17 H17 CLR sing 159 n n C18 H181 CLR sing 160 n n C18 H182 CLR sing 161 n n C18 H183 CLR sing 162 n n C19 H191 CLR sing 163 n n C19 H192 CLR sing 164 n n C19 H193 CLR sing 165 n n C20 C21 CLR sing 166 n n C20 C22 CLR sing 167 n n C20 H20 CLR sing 168 n n C21 H211 CLR sing 169 n n C21 H212 CLR sing 170 n n C21 H213 CLR sing 171 n n C22 C23 CLR sing 172 n n C22 H221 CLR sing 173 n n C22 H222 CLR sing 174 n n C23 C24 CLR sing 175 n n C23 H231 CLR sing 176 n n C23 H232 CLR sing 177 n n C24 C25 CLR sing 178 n n C24 H241 CLR sing 179 n n C24 H242 CLR sing 180 n n C25 C26 CLR sing 181 n n C25 C27 CLR sing 182 n n C25 H25 CLR sing 183 n n C26 H261 CLR sing 184 n n C26 H262 CLR sing 185 n n C26 H263 CLR sing 186 n n C27 H271 CLR sing 187 n n C27 H272 CLR sing 188 n n C27 H273 CLR sing 189 n n O1 H1 CLR sing 190 n n # _atom_sites.entry_id 4XPH _atom_sites.fract_transf_matrix[1][1] 0.010207 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006913 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006036 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 P4G A 1 601 1 P4G P4G . F 6 42J A 1 602 1 42J DUM . G 7 NA A 1 603 1 NA NA . H 7 NA A 1 604 2 NA NA . I 8 CL A 1 605 4 CL CL . J 9 CLR A 1 606 2 CLR CLR . K 9 CLR A 1 607 1 CLR CLR . L 7 NA L 1 301 3 NA NA . M 10 HOH A 1 701 1 HOH HOH . M 10 HOH A 2 702 12 HOH HOH . M 10 HOH A 3 703 15 HOH HOH . M 10 HOH A 4 704 9 HOH HOH . M 10 HOH A 5 705 2 HOH HOH . M 10 HOH A 6 706 10 HOH HOH . M 10 HOH A 7 707 13 HOH HOH . M 10 HOH A 8 708 14 HOH HOH . M 10 HOH A 9 709 11 HOH HOH . N 10 HOH L 1 401 7 HOH HOH . N 10 HOH L 2 402 6 HOH HOH . N 10 HOH L 3 403 8 HOH HOH . N 10 HOH L 4 404 5 HOH HOH . O 10 HOH H 1 301 4 HOH HOH . O 10 HOH H 2 302 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . J 9 96.889 148.952 49.817 1 113.22 ? C1 CLR 606 A 1 HETATM 2 C C2 CLR . . . J 9 97.752 149.417 50.983 1 112.79 ? C2 CLR 606 A 1 HETATM 3 C C3 CLR . . . J 9 97.312 148.727 52.265 1 110.19 ? C3 CLR 606 A 1 HETATM 4 C C4 CLR . . . J 9 97.562 147.231 52.125 1 110.11 ? C4 CLR 606 A 1 HETATM 5 C C5 CLR . . . J 9 96.937 146.685 50.858 1 115.16 ? C5 CLR 606 A 1 HETATM 6 C C6 CLR . . . J 9 96.35 145.479 50.919 1 112.42 ? C6 CLR 606 A 1 HETATM 7 C C7 CLR . . . J 9 95.278 145.063 49.943 1 113.71 ? C7 CLR 606 A 1 HETATM 8 C C8 CLR . . . J 9 95.655 145.55 48.555 1 115.26 ? C8 CLR 606 A 1 HETATM 9 C C9 CLR . . . J 9 95.905 147.054 48.591 1 114.03 ? C9 CLR 606 A 1 HETATM 10 C C10 CLR . . . J 9 97.022 147.455 49.554 1 114.42 ? C10 CLR 606 A 1 HETATM 11 C C11 CLR . . . J 9 96.152 147.616 47.187 1 114.32 ? C11 CLR 606 A 1 HETATM 12 C C12 CLR . . . J 9 95.029 147.266 46.208 1 112.35 ? C12 CLR 606 A 1 HETATM 13 C C13 CLR . . . J 9 94.842 145.756 46.161 1 114.4 ? C13 CLR 606 A 1 HETATM 14 C C14 CLR . . . J 9 94.529 145.277 47.565 1 120.77 ? C14 CLR 606 A 1 HETATM 15 C C15 CLR . . . J 9 94.068 143.836 47.388 1 114.93 ? C15 CLR 606 A 1 HETATM 16 C C16 CLR . . . J 9 93.345 143.862 46.039 1 108.52 ? C16 CLR 606 A 1 HETATM 17 C C17 CLR . . . J 9 93.645 145.216 45.386 1 105.39 ? C17 CLR 606 A 1 HETATM 18 C C18 CLR . . . J 9 96.112 145.081 45.648 1 112.03 ? C18 CLR 606 A 1 HETATM 19 C C19 CLR . . . J 9 98.373 147.158 48.912 1 106.07 ? C19 CLR 606 A 1 HETATM 20 C C20 CLR . . . J 9 93.808 145.082 43.872 1 108.79 ? C20 CLR 606 A 1 HETATM 21 C C21 CLR . . . J 9 93.725 146.424 43.149 1 107.99 ? C21 CLR 606 A 1 HETATM 22 C C22 CLR . . . J 9 92.751 144.116 43.336 1 111.88 ? C22 CLR 606 A 1 HETATM 23 C C23 CLR . . . J 9 92.579 144.18 41.821 1 110.62 ? C23 CLR 606 A 1 HETATM 24 C C24 CLR . . . J 9 91.162 144.609 41.449 1 106.27 ? C24 CLR 606 A 1 HETATM 25 C C25 CLR . . . J 9 90.831 144.243 40.007 1 102.34 ? C25 CLR 606 A 1 HETATM 26 C C26 CLR . . . J 9 89.558 144.94 39.543 1 93.97 ? C26 CLR 606 A 1 HETATM 27 C C27 CLR . . . J 9 90.713 142.732 39.847 1 88.66 ? C27 CLR 606 A 1 HETATM 28 O O1 CLR . . . J 9 98.061 149.242 53.374 1 107.96 ? O1 CLR 606 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #