data_4XPN # _model_server_result.job_id GuBlxG9W42Y0LKwC8SIFTA _model_server_result.datetime_utc '2024-11-26 01:27:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xpn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":402}' # _entry.id 4XPN # _exptl.entry_id 4XPN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XPN _cell.length_a 64.311 _cell.length_b 112.853 _cell.length_c 125.013 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XPN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,M,N 1 1 C,D,I,J,K,L,O,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 I N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 63 A ASP 64 1_555 E MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc2 A NE2 HIS 65 A HIS 66 1_555 E MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc3 A OD2 ASP 91 A ASP 92 1_555 E MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc4 A OD2 ASP 91 A ASP 92 1_555 F MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc5 A OD1 ASN 123 A ASN 124 1_555 F MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc6 A NE2 HIS 172 A HIS 173 1_555 F MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? metalc ? metalc7 A ND1 HIS 247 A HIS 248 1_555 F MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc8 E MN MN . A MN 401 1_555 G O2 PO4 . A PO4 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc9 E MN MN . A MN 401 1_555 M O HOH . A HOH 624 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc10 F MN MN . A MN 402 1_555 G O4 PO4 . A PO4 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc11 F MN MN . A MN 402 1_555 M O HOH . A HOH 624 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc12 C OD2 ASP 63 C ASP 64 1_555 J MN MN . C MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc13 C NE2 HIS 65 C HIS 66 1_555 J MN MN . C MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc14 C OD2 ASP 91 C ASP 92 1_555 I MN MN . C MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc15 C OD2 ASP 91 C ASP 92 1_555 J MN MN . C MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc16 C OD1 ASN 123 C ASN 124 1_555 I MN MN . C MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc17 C NE2 HIS 172 C HIS 173 1_555 I MN MN . C MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc18 C ND1 HIS 247 C HIS 248 1_555 I MN MN . C MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc19 I MN MN . C MN 401 1_555 K O1 PO4 . C PO4 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? metalc ? metalc20 I MN MN . C MN 401 1_555 O O HOH . C HOH 588 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc21 J MN MN . C MN 402 1_555 O O HOH . C HOH 588 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc22 J MN MN . C MN 402 1_555 O O HOH . C HOH 589 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4XPN _atom_sites.fract_transf_matrix[1][1] 0.015549 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008861 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007999 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 MN A 1 401 400 MN MN . F 3 MN A 1 402 401 MN MN . G 4 PO4 A 1 403 402 PO4 PO4 . H 5 GOL A 1 404 1 GOL GOL . I 3 MN C 1 401 400 MN MN . J 3 MN C 1 402 401 MN MN . K 4 PO4 C 1 403 402 PO4 PO4 . L 5 GOL C 1 404 2 GOL GOL . M 6 HOH A 1 501 451 HOH HOH . M 6 HOH A 2 502 33 HOH HOH . M 6 HOH A 3 503 117 HOH HOH . M 6 HOH A 4 504 425 HOH HOH . M 6 HOH A 5 505 26 HOH HOH . M 6 HOH A 6 506 85 HOH HOH . M 6 HOH A 7 507 46 HOH HOH . M 6 HOH A 8 508 141 HOH HOH . M 6 HOH A 9 509 37 HOH HOH . M 6 HOH A 10 510 80 HOH HOH . M 6 HOH A 11 511 5 HOH HOH . M 6 HOH A 12 512 136 HOH HOH . M 6 HOH A 13 513 8 HOH HOH . M 6 HOH A 14 514 112 HOH HOH . M 6 HOH A 15 515 132 HOH HOH . M 6 HOH A 16 516 157 HOH HOH . M 6 HOH A 17 517 13 HOH HOH . M 6 HOH A 18 518 67 HOH HOH . M 6 HOH A 19 519 179 HOH HOH . M 6 HOH A 20 520 430 HOH HOH . M 6 HOH A 21 521 421 HOH HOH . M 6 HOH A 22 522 76 HOH HOH . M 6 HOH A 23 523 2 HOH HOH . M 6 HOH A 24 524 3 HOH HOH . M 6 HOH A 25 525 7 HOH HOH . M 6 HOH A 26 526 9 HOH HOH . M 6 HOH A 27 527 11 HOH HOH . M 6 HOH A 28 528 12 HOH HOH . M 6 HOH A 29 529 14 HOH HOH . M 6 HOH A 30 530 17 HOH HOH . M 6 HOH A 31 531 18 HOH HOH . M 6 HOH A 32 532 19 HOH HOH . M 6 HOH A 33 533 20 HOH HOH . M 6 HOH A 34 534 24 HOH HOH . M 6 HOH A 35 535 27 HOH HOH . M 6 HOH A 36 536 30 HOH HOH . M 6 HOH A 37 537 31 HOH HOH . M 6 HOH A 38 538 34 HOH HOH . M 6 HOH A 39 539 35 HOH HOH . M 6 HOH A 40 540 36 HOH HOH . M 6 HOH A 41 541 38 HOH HOH . M 6 HOH A 42 542 40 HOH HOH . M 6 HOH A 43 543 44 HOH HOH . M 6 HOH A 44 544 52 HOH HOH . M 6 HOH A 45 545 53 HOH HOH . M 6 HOH A 46 546 56 HOH HOH . M 6 HOH A 47 547 57 HOH HOH . M 6 HOH A 48 548 58 HOH HOH . M 6 HOH A 49 549 60 HOH HOH . M 6 HOH A 50 550 61 HOH HOH . M 6 HOH A 51 551 62 HOH HOH . M 6 HOH A 52 552 65 HOH HOH . M 6 HOH A 53 553 68 HOH HOH . M 6 HOH A 54 554 69 HOH HOH . M 6 HOH A 55 555 70 HOH HOH . M 6 HOH A 56 556 71 HOH HOH . M 6 HOH A 57 557 74 HOH HOH . M 6 HOH A 58 558 75 HOH HOH . M 6 HOH A 59 559 79 HOH HOH . M 6 HOH A 60 560 84 HOH HOH . M 6 HOH A 61 561 86 HOH HOH . M 6 HOH A 62 562 87 HOH HOH . M 6 HOH A 63 563 90 HOH HOH . M 6 HOH A 64 564 94 HOH HOH . M 6 HOH A 65 565 96 HOH HOH . M 6 HOH A 66 566 101 HOH HOH . M 6 HOH A 67 567 103 HOH HOH . M 6 HOH A 68 568 104 HOH HOH . M 6 HOH A 69 569 105 HOH HOH . M 6 HOH A 70 570 106 HOH HOH . M 6 HOH A 71 571 107 HOH HOH . M 6 HOH A 72 572 110 HOH HOH . M 6 HOH A 73 573 113 HOH HOH . M 6 HOH A 74 574 119 HOH HOH . M 6 HOH A 75 575 121 HOH HOH . M 6 HOH A 76 576 124 HOH HOH . M 6 HOH A 77 577 131 HOH HOH . M 6 HOH A 78 578 133 HOH HOH . M 6 HOH A 79 579 138 HOH HOH . M 6 HOH A 80 580 139 HOH HOH . M 6 HOH A 81 581 145 HOH HOH . M 6 HOH A 82 582 158 HOH HOH . M 6 HOH A 83 583 164 HOH HOH . M 6 HOH A 84 584 167 HOH HOH . M 6 HOH A 85 585 168 HOH HOH . M 6 HOH A 86 586 169 HOH HOH . M 6 HOH A 87 587 175 HOH HOH . M 6 HOH A 88 588 210 HOH HOH . M 6 HOH A 89 589 219 HOH HOH . M 6 HOH A 90 590 265 HOH HOH . M 6 HOH A 91 591 365 HOH HOH . M 6 HOH A 92 592 374 HOH HOH . M 6 HOH A 93 593 384 HOH HOH . M 6 HOH A 94 594 386 HOH HOH . M 6 HOH A 95 595 387 HOH HOH . M 6 HOH A 96 596 388 HOH HOH . M 6 HOH A 97 597 389 HOH HOH . M 6 HOH A 98 598 393 HOH HOH . M 6 HOH A 99 599 395 HOH HOH . M 6 HOH A 100 600 397 HOH HOH . M 6 HOH A 101 601 401 HOH HOH . M 6 HOH A 102 602 405 HOH HOH . M 6 HOH A 103 603 409 HOH HOH . M 6 HOH A 104 604 410 HOH HOH . M 6 HOH A 105 605 411 HOH HOH . M 6 HOH A 106 606 412 HOH HOH . M 6 HOH A 107 607 413 HOH HOH . M 6 HOH A 108 608 415 HOH HOH . M 6 HOH A 109 609 417 HOH HOH . M 6 HOH A 110 610 418 HOH HOH . M 6 HOH A 111 611 419 HOH HOH . M 6 HOH A 112 612 420 HOH HOH . M 6 HOH A 113 613 428 HOH HOH . M 6 HOH A 114 614 429 HOH HOH . M 6 HOH A 115 615 432 HOH HOH . M 6 HOH A 116 616 433 HOH HOH . M 6 HOH A 117 617 436 HOH HOH . M 6 HOH A 118 618 437 HOH HOH . M 6 HOH A 119 619 450 HOH HOH . M 6 HOH A 120 620 477 HOH HOH . M 6 HOH A 121 621 483 HOH HOH . M 6 HOH A 122 622 489 HOH HOH . M 6 HOH A 123 623 491 HOH HOH . M 6 HOH A 124 624 493 HOH HOH . M 6 HOH A 125 625 494 HOH HOH . M 6 HOH A 126 626 495 HOH HOH . M 6 HOH A 127 627 499 HOH HOH . M 6 HOH A 128 628 501 HOH HOH . M 6 HOH A 129 629 502 HOH HOH . M 6 HOH A 130 630 508 HOH HOH . M 6 HOH A 131 631 509 HOH HOH . N 6 HOH B 1 601 102 HOH HOH . N 6 HOH B 2 602 438 HOH HOH . O 6 HOH C 1 501 39 HOH HOH . O 6 HOH C 2 502 130 HOH HOH . O 6 HOH C 3 503 25 HOH HOH . O 6 HOH C 4 504 63 HOH HOH . O 6 HOH C 5 505 4 HOH HOH . O 6 HOH C 6 506 422 HOH HOH . O 6 HOH C 7 507 28 HOH HOH . O 6 HOH C 8 508 144 HOH HOH . O 6 HOH C 9 509 23 HOH HOH . O 6 HOH C 10 510 77 HOH HOH . O 6 HOH C 11 511 498 HOH HOH . O 6 HOH C 12 512 456 HOH HOH . O 6 HOH C 13 513 29 HOH HOH . O 6 HOH C 14 514 165 HOH HOH . O 6 HOH C 15 515 392 HOH HOH . O 6 HOH C 16 516 1 HOH HOH . O 6 HOH C 17 517 6 HOH HOH . O 6 HOH C 18 518 10 HOH HOH . O 6 HOH C 19 519 15 HOH HOH . O 6 HOH C 20 520 21 HOH HOH . O 6 HOH C 21 521 22 HOH HOH . O 6 HOH C 22 522 32 HOH HOH . O 6 HOH C 23 523 41 HOH HOH . O 6 HOH C 24 524 42 HOH HOH . O 6 HOH C 25 525 47 HOH HOH . O 6 HOH C 26 526 50 HOH HOH . O 6 HOH C 27 527 51 HOH HOH . O 6 HOH C 28 528 54 HOH HOH . O 6 HOH C 29 529 55 HOH HOH . O 6 HOH C 30 530 64 HOH HOH . O 6 HOH C 31 531 73 HOH HOH . O 6 HOH C 32 532 83 HOH HOH . O 6 HOH C 33 533 88 HOH HOH . O 6 HOH C 34 534 92 HOH HOH . O 6 HOH C 35 535 95 HOH HOH . O 6 HOH C 36 536 97 HOH HOH . O 6 HOH C 37 537 108 HOH HOH . O 6 HOH C 38 538 111 HOH HOH . O 6 HOH C 39 539 120 HOH HOH . O 6 HOH C 40 540 122 HOH HOH . O 6 HOH C 41 541 123 HOH HOH . O 6 HOH C 42 542 126 HOH HOH . O 6 HOH C 43 543 127 HOH HOH . O 6 HOH C 44 544 129 HOH HOH . O 6 HOH C 45 545 134 HOH HOH . O 6 HOH C 46 546 140 HOH HOH . O 6 HOH C 47 547 147 HOH HOH . O 6 HOH C 48 548 149 HOH HOH . O 6 HOH C 49 549 150 HOH HOH . O 6 HOH C 50 550 152 HOH HOH . O 6 HOH C 51 551 153 HOH HOH . O 6 HOH C 52 552 171 HOH HOH . O 6 HOH C 53 553 183 HOH HOH . O 6 HOH C 54 554 225 HOH HOH . O 6 HOH C 55 555 234 HOH HOH . O 6 HOH C 56 556 379 HOH HOH . O 6 HOH C 57 557 381 HOH HOH . O 6 HOH C 58 558 399 HOH HOH . O 6 HOH C 59 559 402 HOH HOH . O 6 HOH C 60 560 403 HOH HOH . O 6 HOH C 61 561 404 HOH HOH . O 6 HOH C 62 562 423 HOH HOH . O 6 HOH C 63 563 434 HOH HOH . O 6 HOH C 64 564 439 HOH HOH . O 6 HOH C 65 565 440 HOH HOH . O 6 HOH C 66 566 441 HOH HOH . O 6 HOH C 67 567 442 HOH HOH . O 6 HOH C 68 568 443 HOH HOH . O 6 HOH C 69 569 448 HOH HOH . O 6 HOH C 70 570 452 HOH HOH . O 6 HOH C 71 571 453 HOH HOH . O 6 HOH C 72 572 454 HOH HOH . O 6 HOH C 73 573 457 HOH HOH . O 6 HOH C 74 574 458 HOH HOH . O 6 HOH C 75 575 459 HOH HOH . O 6 HOH C 76 576 460 HOH HOH . O 6 HOH C 77 577 461 HOH HOH . O 6 HOH C 78 578 462 HOH HOH . O 6 HOH C 79 579 466 HOH HOH . O 6 HOH C 80 580 468 HOH HOH . O 6 HOH C 81 581 469 HOH HOH . O 6 HOH C 82 582 471 HOH HOH . O 6 HOH C 83 583 472 HOH HOH . O 6 HOH C 84 584 478 HOH HOH . O 6 HOH C 85 585 481 HOH HOH . O 6 HOH C 86 586 482 HOH HOH . O 6 HOH C 87 587 486 HOH HOH . O 6 HOH C 88 588 492 HOH HOH . O 6 HOH C 89 589 497 HOH HOH . P 6 HOH D 1 601 89 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x -8.548 _atom_site.Cartn_y 15.773 _atom_site.Cartn_z -14.163 _atom_site.occupancy 0.94 _atom_site.B_iso_or_equiv 39.31 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 402 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 251 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #