data_4XPT # _model_server_result.job_id 5C3hgTYKEyNJSVpI7aYVqA _model_server_result.datetime_utc '2024-11-24 06:19:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xpt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":609}' # _entry.id 4XPT # _exptl.entry_id 4XPT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.654 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XPT _cell.length_a 96.614 _cell.length_b 139.148 _cell.length_c 166.679 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XPT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 BGC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D BGC 1 B 1 BGC M 1 MAL 4 n D GLC 2 B 2 GLC M 1 MAL 4 n E BGC 1 C 1 BGC M 2 MAL 4 n E GLC 2 C 2 GLC M 2 MAL 4 n F BGC 1 D 1 BGC M 3 MAL 4 n F GLC 2 D 2 GLC M 3 MAL 4 n G BGC 1 E 1 BGC M 4 MAL 4 n G GLC 2 E 2 GLC M 4 MAL 4 n H BGC 1 F 1 BGC M 5 MAL 4 n H GLC 2 F 2 GLC M 5 MAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 124 A CYS 148 1_555 A SG CYS 133 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 B SG CYS 23 L CYS 23 1_555 B SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 B SG CYS 135 L CYS 135 1_555 B SG CYS 195 L CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 C SG CYS 22 H CYS 22 1_555 C SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 C SG CYS 146 H CYS 146 1_555 C SG CYS 201 H CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 117 A ASN 141 1_555 K C1 NAG . A NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale2 D O4 BGC . B BGC 1 1_555 D C1 GLC . B GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 sing covale ? covale3 E O4 BGC . C BGC 1 1_555 E C1 GLC . C GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 sing covale ? covale4 F O4 BGC . D BGC 1 1_555 F C1 GLC . D GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 sing covale ? covale5 G O4 BGC . E BGC 1 1_555 G C1 GLC . E GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 sing covale ? covale6 H O4 BGC . F BGC 1 1_555 H C1 GLC . F GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 sing metalc ? metalc1 A O GLY 18 A GLY 42 1_555 O NA NA . A NA 612 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc2 A O ALA 20 A ALA 44 1_555 N NA NA . A NA 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? metalc ? metalc3 A O VAL 21 A VAL 45 1_555 O NA NA . A NA 612 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc4 A OD1 ASP 22 A ASP 46 1_555 N NA NA . A NA 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? metalc ? metalc5 A OD1 ASN 25 A ASN 49 1_555 N NA NA . A NA 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc6 A O SER 256 A SER 320 1_555 N NA NA . A NA 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.78 ? metalc ? metalc7 A OG SER 256 A SER 320 1_555 N NA NA . A NA 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? metalc ? metalc8 A OD1 ASN 288 A ASN 352 1_555 N NA NA . A NA 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.063 ? metalc ? metalc9 A O LEU 353 A LEU 417 1_555 O NA NA . A NA 612 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc10 A OD1 ASP 356 A ASP 420 1_555 O NA NA . A NA 612 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc11 A OD2 ASP 356 A ASP 420 1_555 O NA NA . A NA 612 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.973 ? metalc ? metalc12 A OG SER 357 A SER 421 1_555 O NA NA . A NA 612 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 114 n n C1 C10 CLR sing 115 n n C1 H11 CLR sing 116 n n C1 H12 CLR sing 117 n n C2 C3 CLR sing 118 n n C2 H21 CLR sing 119 n n C2 H22 CLR sing 120 n n C3 C4 CLR sing 121 n n C3 O1 CLR sing 122 n n C3 H3 CLR sing 123 n n C4 C5 CLR sing 124 n n C4 H41 CLR sing 125 n n C4 H42 CLR sing 126 n n C5 C6 CLR doub 127 n n C5 C10 CLR sing 128 n n C6 C7 CLR sing 129 n n C6 H6 CLR sing 130 n n C7 C8 CLR sing 131 n n C7 H71 CLR sing 132 n n C7 H72 CLR sing 133 n n C8 C9 CLR sing 134 n n C8 C14 CLR sing 135 n n C8 H8 CLR sing 136 n n C9 C10 CLR sing 137 n n C9 C11 CLR sing 138 n n C9 H9 CLR sing 139 n n C10 C19 CLR sing 140 n n C11 C12 CLR sing 141 n n C11 H111 CLR sing 142 n n C11 H112 CLR sing 143 n n C12 C13 CLR sing 144 n n C12 H121 CLR sing 145 n n C12 H122 CLR sing 146 n n C13 C14 CLR sing 147 n n C13 C17 CLR sing 148 n n C13 C18 CLR sing 149 n n C14 C15 CLR sing 150 n n C14 H14 CLR sing 151 n n C15 C16 CLR sing 152 n n C15 H151 CLR sing 153 n n C15 H152 CLR sing 154 n n C16 C17 CLR sing 155 n n C16 H161 CLR sing 156 n n C16 H162 CLR sing 157 n n C17 C20 CLR sing 158 n n C17 H17 CLR sing 159 n n C18 H181 CLR sing 160 n n C18 H182 CLR sing 161 n n C18 H183 CLR sing 162 n n C19 H191 CLR sing 163 n n C19 H192 CLR sing 164 n n C19 H193 CLR sing 165 n n C20 C21 CLR sing 166 n n C20 C22 CLR sing 167 n n C20 H20 CLR sing 168 n n C21 H211 CLR sing 169 n n C21 H212 CLR sing 170 n n C21 H213 CLR sing 171 n n C22 C23 CLR sing 172 n n C22 H221 CLR sing 173 n n C22 H222 CLR sing 174 n n C23 C24 CLR sing 175 n n C23 H231 CLR sing 176 n n C23 H232 CLR sing 177 n n C24 C25 CLR sing 178 n n C24 H241 CLR sing 179 n n C24 H242 CLR sing 180 n n C25 C26 CLR sing 181 n n C25 C27 CLR sing 182 n n C25 H25 CLR sing 183 n n C26 H261 CLR sing 184 n n C26 H262 CLR sing 185 n n C26 H263 CLR sing 186 n n C27 H271 CLR sing 187 n n C27 H272 CLR sing 188 n n C27 H273 CLR sing 189 n n O1 H1 CLR sing 190 n n # _atom_sites.entry_id 4XPT _atom_sites.fract_transf_matrix[1][1] 0.01035 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007187 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 5 Y01 A 1 601 1 Y01 CHS . J 6 42J A 1 602 601 42J DCP . K 7 NAG A 1 603 701 NAG NAG . L 8 CLR A 1 609 1 CLR CLR . M 9 CL A 1 610 1 CL CL . N 10 NA A 1 611 1 NA NA . O 10 NA A 1 612 2 NA NA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . L 8 90.778 295.786 34.561 1 95.74 ? C1 CLR 609 A 1 HETATM 2 C C2 CLR . . . L 8 91.886 296.685 35.094 1 108.17 ? C2 CLR 609 A 1 HETATM 3 C C3 CLR . . . L 8 92.151 296.382 36.564 1 106.46 ? C3 CLR 609 A 1 HETATM 4 C C4 CLR . . . L 8 92.669 294.955 36.7 1 102.52 ? C4 CLR 609 A 1 HETATM 5 C C5 CLR . . . L 8 91.738 293.998 35.99 1 102.43 ? C5 CLR 609 A 1 HETATM 6 C C6 CLR . . . L 8 91.403 292.844 36.583 1 102.37 ? C6 CLR 609 A 1 HETATM 7 C C7 CLR . . . L 8 91.035 291.606 35.796 1 110.97 ? C7 CLR 609 A 1 HETATM 8 C C8 CLR . . . L 8 90.361 291.956 34.475 1 103.14 ? C8 CLR 609 A 1 HETATM 9 C C9 CLR . . . L 8 89.967 293.428 34.408 1 98.91 ? C9 CLR 609 A 1 HETATM 10 C C10 CLR . . . L 8 91.183 294.319 34.627 1 100.63 ? C10 CLR 609 A 1 HETATM 11 C C11 CLR . . . L 8 89.226 293.767 33.112 1 100.15 ? C11 CLR 609 A 1 HETATM 12 C C12 CLR . . . L 8 88.025 292.848 32.884 1 104.8 ? C12 CLR 609 A 1 HETATM 13 C C13 CLR . . . L 8 88.498 291.404 32.909 1 104.52 ? C13 CLR 609 A 1 HETATM 14 C C14 CLR . . . L 8 89.112 291.118 34.258 1 106.96 ? C14 CLR 609 A 1 HETATM 15 C C15 CLR . . . L 8 89.253 289.604 34.295 1 107.2 ? C15 CLR 609 A 1 HETATM 16 C C16 CLR . . . L 8 88.045 289.104 33.499 1 99.45 ? C16 CLR 609 A 1 HETATM 17 C C17 CLR . . . L 8 87.425 290.328 32.822 1 103.33 ? C17 CLR 609 A 1 HETATM 18 C C18 CLR . . . L 8 89.549 291.184 31.826 1 102.14 ? C18 CLR 609 A 1 HETATM 19 C C19 CLR . . . L 8 92.253 294.021 33.584 1 99.39 ? C19 CLR 609 A 1 HETATM 20 C C20 CLR . . . L 8 86.924 290.027 31.412 1 106.91 ? C20 CLR 609 A 1 HETATM 21 C C21 CLR . . . L 8 86.696 291.29 30.59 1 110.83 ? C21 CLR 609 A 1 HETATM 22 C C22 CLR . . . L 8 85.637 289.21 31.466 1 108.24 ? C22 CLR 609 A 1 HETATM 23 C C23 CLR . . . L 8 85.898 287.709 31.459 1 103.46 ? C23 CLR 609 A 1 HETATM 24 C C24 CLR . . . L 8 84.589 286.958 31.239 1 100.81 ? C24 CLR 609 A 1 HETATM 25 C C25 CLR . . . L 8 84.833 285.562 30.679 1 103.69 ? C25 CLR 609 A 1 HETATM 26 C C26 CLR . . . L 8 83.558 284.99 30.071 1 92.66 ? C26 CLR 609 A 1 HETATM 27 C C27 CLR . . . L 8 85.388 284.632 31.75 1 99.03 ? C27 CLR 609 A 1 HETATM 28 O O1 CLR . . . L 8 93.115 297.301 37.096 1 92.89 ? O1 CLR 609 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 349 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 28 #