data_4XPW # _model_server_result.job_id MpW2qIftoNGPg9huVCHaQQ _model_server_result.datetime_utc '2024-11-15 02:53:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xpw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 4XPW # _exptl.entry_id 4XPW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4XPW _cell.length_a 83.281 _cell.length_b 83.281 _cell.length_c 30.959 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XPW _symmetry.cell_setting ? _symmetry.Int_Tables_number 168 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 6' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 22 A HIS 22 1_555 C FE FE2 . A FE2 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc2 A NE2 HIS 58 A HIS 58 1_555 C FE FE2 . A FE2 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc3 A OE1 GLU 62 A GLU 62 1_555 B FE FE2 . A FE2 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc4 A OE2 GLU 62 A GLU 62 1_555 C FE FE2 . A FE2 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc5 A NE2 HIS 77 A HIS 77 1_555 B FE FE2 . A FE2 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc6 A NE2 HIS 81 A HIS 81 1_555 B FE FE2 . A FE2 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc7 A NE2 HIS 117 A HIS 117 1_555 B FE FE2 . A FE2 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc8 A OD1 ASP 122 A ASP 122 1_555 B FE FE2 . A FE2 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc9 A OD2 ASP 122 A ASP 122 1_555 C FE FE2 . A FE2 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc10 B FE FE2 . A FE2 201 1_555 E O HOH . A HOH 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? metalc ? metalc11 C FE FE2 . A FE2 202 1_555 E O HOH . A HOH 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc12 C FE FE2 . A FE2 202 1_555 E O HOH . A HOH 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.917 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4XPW _atom_sites.fract_transf_matrix[1][1] 0.012008 _atom_sites.fract_transf_matrix[1][2] 0.006933 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013865 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.032301 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE2 A 1 201 1 FE2 Fe . C 2 FE2 A 1 202 2 FE2 Fe . D 3 GOL A 1 203 1 GOL GOL . E 4 HOH A 1 301 161 HOH HOH . E 4 HOH A 2 302 109 HOH HOH . E 4 HOH A 3 303 144 HOH HOH . E 4 HOH A 4 304 118 HOH HOH . E 4 HOH A 5 305 103 HOH HOH . E 4 HOH A 6 306 10 HOH HOH . E 4 HOH A 7 307 59 HOH HOH . E 4 HOH A 8 308 11 HOH HOH . E 4 HOH A 9 309 24 HOH HOH . E 4 HOH A 10 310 30 HOH HOH . E 4 HOH A 11 311 78 HOH HOH . E 4 HOH A 12 312 9 HOH HOH . E 4 HOH A 13 313 133 HOH HOH . E 4 HOH A 14 314 100 HOH HOH . E 4 HOH A 15 315 102 HOH HOH . E 4 HOH A 16 316 17 HOH HOH . E 4 HOH A 17 317 88 HOH HOH . E 4 HOH A 18 318 53 HOH HOH . E 4 HOH A 19 319 39 HOH HOH . E 4 HOH A 20 320 28 HOH HOH . E 4 HOH A 21 321 5 HOH HOH . E 4 HOH A 22 322 85 HOH HOH . E 4 HOH A 23 323 55 HOH HOH . E 4 HOH A 24 324 71 HOH HOH . E 4 HOH A 25 325 20 HOH HOH . E 4 HOH A 26 326 54 HOH HOH . E 4 HOH A 27 327 35 HOH HOH . E 4 HOH A 28 328 25 HOH HOH . E 4 HOH A 29 329 93 HOH HOH . E 4 HOH A 30 330 41 HOH HOH . E 4 HOH A 31 331 43 HOH HOH . E 4 HOH A 32 332 91 HOH HOH . E 4 HOH A 33 333 18 HOH HOH . E 4 HOH A 34 334 95 HOH HOH . E 4 HOH A 35 335 2 HOH HOH . E 4 HOH A 36 336 12 HOH HOH . E 4 HOH A 37 337 73 HOH HOH . E 4 HOH A 38 338 125 HOH HOH . E 4 HOH A 39 339 29 HOH HOH . E 4 HOH A 40 340 33 HOH HOH . E 4 HOH A 41 341 66 HOH HOH . E 4 HOH A 42 342 1 HOH HOH . E 4 HOH A 43 343 37 HOH HOH . E 4 HOH A 44 344 94 HOH HOH . E 4 HOH A 45 345 7 HOH HOH . E 4 HOH A 46 346 105 HOH HOH . E 4 HOH A 47 347 117 HOH HOH . E 4 HOH A 48 348 31 HOH HOH . E 4 HOH A 49 349 116 HOH HOH . E 4 HOH A 50 350 134 HOH HOH . E 4 HOH A 51 351 49 HOH HOH . E 4 HOH A 52 352 23 HOH HOH . E 4 HOH A 53 353 14 HOH HOH . E 4 HOH A 54 354 99 HOH HOH . E 4 HOH A 55 355 48 HOH HOH . E 4 HOH A 56 356 15 HOH HOH . E 4 HOH A 57 357 112 HOH HOH . E 4 HOH A 58 358 140 HOH HOH . E 4 HOH A 59 359 97 HOH HOH . E 4 HOH A 60 360 61 HOH HOH . E 4 HOH A 61 361 86 HOH HOH . E 4 HOH A 62 362 16 HOH HOH . E 4 HOH A 63 363 113 HOH HOH . E 4 HOH A 64 364 26 HOH HOH . E 4 HOH A 65 365 27 HOH HOH . E 4 HOH A 66 366 60 HOH HOH . E 4 HOH A 67 367 79 HOH HOH . E 4 HOH A 68 368 87 HOH HOH . E 4 HOH A 69 369 51 HOH HOH . E 4 HOH A 70 370 174 HOH HOH . E 4 HOH A 71 371 104 HOH HOH . E 4 HOH A 72 372 21 HOH HOH . E 4 HOH A 73 373 82 HOH HOH . E 4 HOH A 74 374 4 HOH HOH . E 4 HOH A 75 375 155 HOH HOH . E 4 HOH A 76 376 57 HOH HOH . E 4 HOH A 77 377 177 HOH HOH . E 4 HOH A 78 378 131 HOH HOH . E 4 HOH A 79 379 173 HOH HOH . E 4 HOH A 80 380 172 HOH HOH . E 4 HOH A 81 381 157 HOH HOH . E 4 HOH A 82 382 65 HOH HOH . E 4 HOH A 83 383 128 HOH HOH . E 4 HOH A 84 384 184 HOH HOH . E 4 HOH A 85 385 142 HOH HOH . E 4 HOH A 86 386 178 HOH HOH . E 4 HOH A 87 387 58 HOH HOH . E 4 HOH A 88 388 81 HOH HOH . E 4 HOH A 89 389 171 HOH HOH . E 4 HOH A 90 390 69 HOH HOH . E 4 HOH A 91 391 179 HOH HOH . E 4 HOH A 92 392 46 HOH HOH . E 4 HOH A 93 393 90 HOH HOH . E 4 HOH A 94 394 194 HOH HOH . E 4 HOH A 95 395 195 HOH HOH . E 4 HOH A 96 396 1 HOH O . E 4 HOH A 97 397 2 HOH O . E 4 HOH A 98 398 3 HOH HOH . E 4 HOH A 99 399 6 HOH HOH . E 4 HOH A 100 400 8 HOH HOH . E 4 HOH A 101 401 13 HOH HOH . E 4 HOH A 102 402 19 HOH HOH . E 4 HOH A 103 403 22 HOH HOH . E 4 HOH A 104 404 32 HOH HOH . E 4 HOH A 105 405 34 HOH HOH . E 4 HOH A 106 406 36 HOH HOH . E 4 HOH A 107 407 38 HOH HOH . E 4 HOH A 108 408 40 HOH HOH . E 4 HOH A 109 409 42 HOH HOH . E 4 HOH A 110 410 44 HOH HOH . E 4 HOH A 111 411 45 HOH HOH . E 4 HOH A 112 412 52 HOH HOH . E 4 HOH A 113 413 56 HOH HOH . E 4 HOH A 114 414 62 HOH HOH . E 4 HOH A 115 415 64 HOH HOH . E 4 HOH A 116 416 67 HOH HOH . E 4 HOH A 117 417 68 HOH HOH . E 4 HOH A 118 418 70 HOH HOH . E 4 HOH A 119 419 72 HOH HOH . E 4 HOH A 120 420 74 HOH HOH . E 4 HOH A 121 421 75 HOH HOH . E 4 HOH A 122 422 76 HOH HOH . E 4 HOH A 123 423 77 HOH HOH . E 4 HOH A 124 424 80 HOH HOH . E 4 HOH A 125 425 83 HOH HOH . E 4 HOH A 126 426 84 HOH HOH . E 4 HOH A 127 427 89 HOH HOH . E 4 HOH A 128 428 106 HOH HOH . E 4 HOH A 129 429 107 HOH HOH . E 4 HOH A 130 430 108 HOH HOH . E 4 HOH A 131 431 110 HOH HOH . E 4 HOH A 132 432 114 HOH HOH . E 4 HOH A 133 433 115 HOH HOH . E 4 HOH A 134 434 120 HOH HOH . E 4 HOH A 135 435 122 HOH HOH . E 4 HOH A 136 436 123 HOH HOH . E 4 HOH A 137 437 129 HOH HOH . E 4 HOH A 138 438 132 HOH HOH . E 4 HOH A 139 439 136 HOH HOH . E 4 HOH A 140 440 149 HOH HOH . E 4 HOH A 141 441 150 HOH HOH . E 4 HOH A 142 442 153 HOH HOH . E 4 HOH A 143 443 175 HOH HOH . E 4 HOH A 144 444 176 HOH HOH . E 4 HOH A 145 445 180 HOH HOH . E 4 HOH A 146 446 182 HOH HOH . E 4 HOH A 147 447 183 HOH HOH . E 4 HOH A 148 448 185 HOH HOH . E 4 HOH A 149 449 187 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 -20.591 15.909 10.969 1 9.41 ? C1 GOL 203 A 1 HETATM 2 O O1 GOL . . . D 3 -20.498 15.105 12.173 1 8.11 ? O1 GOL 203 A 1 HETATM 3 C C2 GOL . . . D 3 -19.191 16.456 10.584 1 8.4 ? C2 GOL 203 A 1 HETATM 4 O O2 GOL . . . D 3 -18.337 15.273 10.398 1 8.32 ? O2 GOL 203 A 1 HETATM 5 C C3 GOL . . . D 3 -19.276 17.191 9.24 1 8.9 ? C3 GOL 203 A 1 HETATM 6 O O3 GOL . . . D 3 -17.994 17.684 8.798 1 8.31 ? O3 GOL 203 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 597 _model_server_stats.encode_time_ms 26 _model_server_stats.element_count 6 #