data_4XRB # _model_server_result.job_id T4DdWm8XoBCkXyaj1YT8Ew _model_server_result.datetime_utc '2024-11-27 05:55:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xrb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4XRB # _exptl.entry_id 4XRB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XRB _cell.length_a 71.355 _cell.length_b 96.608 _cell.length_c 75.525 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XRB _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 71.355 0 37.7625 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 237 n n PA O2A NDP sing 238 n n PA O5B NDP sing 239 n n PA O3 NDP sing 240 n n O2A HOA2 NDP sing 241 n n O5B C5B NDP sing 242 n n C5B C4B NDP sing 243 n n C5B H51A NDP sing 244 n n C5B H52A NDP sing 245 n n C4B O4B NDP sing 246 n n C4B C3B NDP sing 247 n n C4B H4B NDP sing 248 n n O4B C1B NDP sing 249 n n C3B O3B NDP sing 250 n n C3B C2B NDP sing 251 n n C3B H3B NDP sing 252 n n O3B HO3A NDP sing 253 n n C2B O2B NDP sing 254 n n C2B C1B NDP sing 255 n n C2B H2B NDP sing 256 n n O2B P2B NDP sing 257 n n C1B N9A NDP sing 258 n n C1B H1B NDP sing 259 n n N9A C8A NDP sing 260 n y N9A C4A NDP sing 261 n y C8A N7A NDP doub 262 n y C8A H8A NDP sing 263 n n N7A C5A NDP sing 264 n y C5A C6A NDP sing 265 n y C5A C4A NDP doub 266 n y C6A N6A NDP sing 267 n n C6A N1A NDP doub 268 n y N6A H61A NDP sing 269 n n N6A H62A NDP sing 270 n n N1A C2A NDP sing 271 n y C2A N3A NDP doub 272 n y C2A H2A NDP sing 273 n n N3A C4A NDP sing 274 n y O3 PN NDP sing 275 n n PN O1N NDP doub 276 n n PN O2N NDP sing 277 n n PN O5D NDP sing 278 n n O2N H21N NDP sing 279 n n O5D C5D NDP sing 280 n n C5D C4D NDP sing 281 n n C5D H51N NDP sing 282 n n C5D H52N NDP sing 283 n n C4D O4D NDP sing 284 n n C4D C3D NDP sing 285 n n C4D H4D NDP sing 286 n n O4D C1D NDP sing 287 n n C3D O3D NDP sing 288 n n C3D C2D NDP sing 289 n n C3D H3D NDP sing 290 n n O3D HO3N NDP sing 291 n n C2D O2D NDP sing 292 n n C2D C1D NDP sing 293 n n C2D H2D NDP sing 294 n n O2D HO2N NDP sing 295 n n C1D N1N NDP sing 296 n n C1D H1D NDP sing 297 n n N1N C2N NDP sing 298 n n N1N C6N NDP sing 299 n n C2N C3N NDP doub 300 n n C2N H2N NDP sing 301 n n C3N C7N NDP sing 302 n n C3N C4N NDP sing 303 n n C7N O7N NDP doub 304 n n C7N N7N NDP sing 305 n n N7N H71N NDP sing 306 n n N7N H72N NDP sing 307 n n C4N C5N NDP sing 308 n n C4N H41N NDP sing 309 n n C4N H42N NDP sing 310 n n C5N C6N NDP doub 311 n n C5N H5N NDP sing 312 n n C6N H6N NDP sing 313 n n P2B O1X NDP doub 314 n n P2B O2X NDP sing 315 n n P2B O3X NDP sing 316 n n O2X HOP2 NDP sing 317 n n O3X HOP3 NDP sing 318 n n # _atom_sites.entry_id 4XRB _atom_sites.fract_transf_matrix[1][1] 0.014014 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010351 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013241 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDP A 1 301 259 NDP NDP . C 3 PEG A 1 302 260 PEG DEG . D 4 HOH A 1 401 24 HOH HOH . D 4 HOH A 2 402 31 HOH HOH . D 4 HOH A 3 403 6 HOH HOH . D 4 HOH A 4 404 73 HOH HOH . D 4 HOH A 5 405 17 HOH HOH . D 4 HOH A 6 406 26 HOH HOH . D 4 HOH A 7 407 19 HOH HOH . D 4 HOH A 8 408 77 HOH HOH . D 4 HOH A 9 409 36 HOH HOH . D 4 HOH A 10 410 8 HOH HOH . D 4 HOH A 11 411 18 HOH HOH . D 4 HOH A 12 412 10 HOH HOH . D 4 HOH A 13 413 67 HOH HOH . D 4 HOH A 14 414 52 HOH HOH . D 4 HOH A 15 415 25 HOH HOH . D 4 HOH A 16 416 3 HOH HOH . D 4 HOH A 17 417 9 HOH HOH . D 4 HOH A 18 418 7 HOH HOH . D 4 HOH A 19 419 20 HOH HOH . D 4 HOH A 20 420 13 HOH HOH . D 4 HOH A 21 421 93 HOH HOH . D 4 HOH A 22 422 40 HOH HOH . D 4 HOH A 23 423 12 HOH HOH . D 4 HOH A 24 424 123 HOH HOH . D 4 HOH A 25 425 94 HOH HOH . D 4 HOH A 26 426 75 HOH HOH . D 4 HOH A 27 427 114 HOH HOH . D 4 HOH A 28 428 124 HOH HOH . D 4 HOH A 29 429 38 HOH HOH . D 4 HOH A 30 430 99 HOH HOH . D 4 HOH A 31 431 125 HOH HOH . D 4 HOH A 32 432 100 HOH HOH . D 4 HOH A 33 433 1 HOH HOH . D 4 HOH A 34 434 2 HOH HOH . D 4 HOH A 35 435 4 HOH HOH . D 4 HOH A 36 436 5 HOH HOH . D 4 HOH A 37 437 11 HOH HOH . D 4 HOH A 38 438 14 HOH HOH . D 4 HOH A 39 439 15 HOH HOH . D 4 HOH A 40 440 16 HOH HOH . D 4 HOH A 41 441 21 HOH HOH . D 4 HOH A 42 442 22 HOH HOH . D 4 HOH A 43 443 23 HOH HOH . D 4 HOH A 44 444 27 HOH HOH . D 4 HOH A 45 445 29 HOH HOH . D 4 HOH A 46 446 30 HOH HOH . D 4 HOH A 47 447 32 HOH HOH . D 4 HOH A 48 448 33 HOH HOH . D 4 HOH A 49 449 34 HOH HOH . D 4 HOH A 50 450 35 HOH HOH . D 4 HOH A 51 451 37 HOH HOH . D 4 HOH A 52 452 39 HOH HOH . D 4 HOH A 53 453 43 HOH HOH . D 4 HOH A 54 454 44 HOH HOH . D 4 HOH A 55 455 47 HOH HOH . D 4 HOH A 56 456 49 HOH HOH . D 4 HOH A 57 457 53 HOH HOH . D 4 HOH A 58 458 55 HOH HOH . D 4 HOH A 59 459 66 HOH HOH . D 4 HOH A 60 460 74 HOH HOH . D 4 HOH A 61 461 76 HOH HOH . D 4 HOH A 62 462 82 HOH HOH . D 4 HOH A 63 463 88 HOH HOH . D 4 HOH A 64 464 90 HOH HOH . D 4 HOH A 65 465 97 HOH HOH . D 4 HOH A 66 466 121 HOH HOH . D 4 HOH A 67 467 122 HOH HOH . D 4 HOH A 68 468 126 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . B 2 21.284 16.288 14.697 1 28.75 ? PA NDP 301 A 1 HETATM 2 O O1A NDP . . . B 2 21.772 17.126 13.593 1 28.62 ? O1A NDP 301 A 1 HETATM 3 O O2A NDP . . . B 2 20.17 17.105 15.32 0.85 29.79 -1 O2A NDP 301 A 1 HETATM 4 O O5B NDP . . . B 2 20.624 14.953 14.112 1 30.76 ? O5B NDP 301 A 1 HETATM 5 C C5B NDP . . . B 2 21.285 13.651 14.002 0.82 43.74 ? C5B NDP 301 A 1 HETATM 6 C C4B NDP . . . B 2 20.128 12.96 13.403 0.18 44.75 ? C4B NDP 301 A 1 HETATM 7 O O4B NDP . . . B 2 19.365 14.065 12.741 0.52 43.67 ? O4B NDP 301 A 1 HETATM 8 C C3B NDP . . . B 2 20.495 11.975 12.364 0.54 46.9 ? C3B NDP 301 A 1 HETATM 9 O O3B NDP . . . B 2 20.457 10.665 12.94 0.75 49.22 ? O3B NDP 301 A 1 HETATM 10 C C2B NDP . . . B 2 19.544 12.168 11.251 0.45 47.47 ? C2B NDP 301 A 1 HETATM 11 O O2B NDP . . . B 2 18.241 11.584 11.397 0.54 49.78 ? O2B NDP 301 A 1 HETATM 12 C C1B NDP . . . B 2 19.185 13.597 11.338 0.33 46.95 ? C1B NDP 301 A 1 HETATM 13 N N9A NDP . . . B 2 19.871 14.331 10.423 1 49 ? N9A NDP 301 A 1 HETATM 14 C C8A NDP . . . B 2 20.633 15.263 10.495 1 39.71 ? C8A NDP 301 A 1 HETATM 15 N N7A NDP . . . B 2 21.028 15.661 9.578 0.22 44.04 ? N7A NDP 301 A 1 HETATM 16 C C5A NDP . . . B 2 20.77 15.21 8.515 0.79 46.78 ? C5A NDP 301 A 1 HETATM 17 C C6A NDP . . . B 2 20.879 15.193 6.962 0.65 38.12 ? C6A NDP 301 A 1 HETATM 18 N N6A NDP . . . B 2 21.654 16.135 6.204 1 36.79 ? N6A NDP 301 A 1 HETATM 19 N N1A NDP . . . B 2 20.123 14.196 6.269 0.53 39 ? N1A NDP 301 A 1 HETATM 20 C C2A NDP . . . B 2 19.442 13.425 6.911 0.45 42.43 ? C2A NDP 301 A 1 HETATM 21 N N3A NDP . . . B 2 19.279 13.36 8.038 0.48 43.74 ? N3A NDP 301 A 1 HETATM 22 C C4A NDP . . . B 2 19.75 14.03 8.923 1 46.14 ? C4A NDP 301 A 1 HETATM 23 O O3 NDP . . . B 2 22.533 15.957 15.668 0.74 49.21 ? O3 NDP 301 A 1 HETATM 24 P PN NDP . . . B 2 22.505 15.345 17.148 0.58 68.62 ? PN NDP 301 A 1 HETATM 25 O O1N NDP . . . B 2 23.825 14.651 17.447 1 67.72 ? O1N NDP 301 A 1 HETATM 26 O O2N NDP . . . B 2 21.409 14.304 17.263 0.14 67.36 -1 O2N NDP 301 A 1 HETATM 27 O O5D NDP . . . B 2 22.2 16.527 18.166 0.17 56.78 ? O5D NDP 301 A 1 HETATM 28 C C5D NDP . . . B 2 21.937 16.353 19.55 1 56.72 ? C5D NDP 301 A 1 HETATM 29 C C4D NDP . . . B 2 22.678 17.471 20.212 0.73 54.07 ? C4D NDP 301 A 1 HETATM 30 O O4D NDP . . . B 2 22.547 18.745 19.425 0 50.4 ? O4D NDP 301 A 1 HETATM 31 C C3D NDP . . . B 2 22.279 17.792 21.592 0.45 48.89 ? C3D NDP 301 A 1 HETATM 32 O O3D NDP . . . B 2 23.443 17.399 22.364 0.8 45.72 ? O3D NDP 301 A 1 HETATM 33 C C2D NDP . . . B 2 22.008 19.252 21.641 0.91 47.41 ? C2D NDP 301 A 1 HETATM 34 O O2D NDP . . . B 2 22.422 19.903 22.859 0.6 49.69 ? O2D NDP 301 A 1 HETATM 35 C C1D NDP . . . B 2 22.857 19.681 20.57 0 48.54 ? C1D NDP 301 A 1 HETATM 36 N N1N NDP . . . B 2 23.133 21.023 20.215 0.99 48.61 ? N1N NDP 301 A 1 HETATM 37 C C2N NDP . . . B 2 24.045 22.019 20.593 0 47.21 ? C2N NDP 301 A 1 HETATM 38 C C3N NDP . . . B 2 24.024 23.265 19.973 1 46.31 ? C3N NDP 301 A 1 HETATM 39 C C7N NDP . . . B 2 24.937 24.499 20.229 0.27 29.75 ? C7N NDP 301 A 1 HETATM 40 O O7N NDP . . . B 2 24.583 25.641 19.846 0.81 27.13 ? O7N NDP 301 A 1 HETATM 41 N N7N NDP . . . B 2 26.19 24.279 20.934 1 31.99 ? N7N NDP 301 A 1 HETATM 42 C C4N NDP . . . B 2 22.922 23.556 18.93 0.54 47.15 ? C4N NDP 301 A 1 HETATM 43 C C5N NDP . . . B 2 22.26 22.239 18.455 1 48.91 ? C5N NDP 301 A 1 HETATM 44 C C6N NDP . . . B 2 22.339 21.088 19.093 1 52.33 ? C6N NDP 301 A 1 HETATM 45 P P2B NDP . . . B 2 17.831 10.048 11.154 0.37 45.98 ? P2B NDP 301 A 1 HETATM 46 O O1X NDP . . . B 2 16.353 9.784 11.427 1 45.3 ? O1X NDP 301 A 1 HETATM 47 O O2X NDP . . . B 2 17.957 9.722 9.702 0.93 48.01 -1 O2X NDP 301 A 1 HETATM 48 O O3X NDP . . . B 2 18.749 9.231 12.037 0.59 46.08 -1 O3X NDP 301 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 407 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 48 #