data_4XRF # _model_server_result.job_id uX75YH75QLLEGGfgBsky4A _model_server_result.datetime_utc '2024-12-22 06:04:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xrf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":206}' # _entry.id 4XRF # _exptl.entry_id 4XRF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4XRF _cell.length_a 111.172 _cell.length_b 111.172 _cell.length_c 67.368 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XRF _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -111.172 0 0 3 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 11_455 -x+y-1,y,-z -1 0 0 0 1 0 0 0 -1 -111.172 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 H N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 166 n n C1 C2 GOL sing 167 n n C1 H11 GOL sing 168 n n C1 H12 GOL sing 169 n n O1 HO1 GOL sing 170 n n C2 O2 GOL sing 171 n n C2 C3 GOL sing 172 n n C2 H2 GOL sing 173 n n O2 HO2 GOL sing 174 n n C3 O3 GOL sing 175 n n C3 H31 GOL sing 176 n n C3 H32 GOL sing 177 n n O3 HO3 GOL sing 178 n n # _atom_sites.entry_id 4XRF _atom_sites.fract_transf_matrix[1][1] 0.008995 _atom_sites.fract_transf_matrix[1][2] 0.005193 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010387 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014844 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 201 503 PO4 PO4 . C 2 PO4 A 1 202 504 PO4 PO4 . D 2 PO4 A 1 203 502 PO4 PO4 . E 3 ISQ A 1 204 601 ISQ ISQ . F 4 DAO A 1 205 602 DAO DAO . G 5 GOL A 1 206 531 GOL GOL . H 5 GOL A 1 207 532 GOL GOL . I 2 PO4 A 1 208 501 PO4 PO4 . J 6 NI A 1 209 521 NI NI . K 7 SO4 A 1 210 511 SO4 SO4 . L 8 HOH A 1 301 102 HOH HOH . L 8 HOH A 2 302 90 HOH HOH . L 8 HOH A 3 303 44 HOH HOH . L 8 HOH A 4 304 114 HOH HOH . L 8 HOH A 5 305 6 HOH HOH . L 8 HOH A 6 306 78 HOH HOH . L 8 HOH A 7 307 122 HOH HOH . L 8 HOH A 8 308 66 HOH HOH . L 8 HOH A 9 309 103 HOH HOH . L 8 HOH A 10 310 100 HOH HOH . L 8 HOH A 11 311 126 HOH HOH . L 8 HOH A 12 312 35 HOH HOH . L 8 HOH A 13 313 26 HOH HOH . L 8 HOH A 14 314 105 HOH HOH . L 8 HOH A 15 315 31 HOH HOH . L 8 HOH A 16 316 127 HOH HOH . L 8 HOH A 17 317 110 HOH HOH . L 8 HOH A 18 318 22 HOH HOH . L 8 HOH A 19 319 15 HOH HOH . L 8 HOH A 20 320 71 HOH HOH . L 8 HOH A 21 321 89 HOH HOH . L 8 HOH A 22 322 68 HOH HOH . L 8 HOH A 23 323 86 HOH HOH . L 8 HOH A 24 324 74 HOH HOH . L 8 HOH A 25 325 113 HOH HOH . L 8 HOH A 26 326 57 HOH HOH . L 8 HOH A 27 327 54 HOH HOH . L 8 HOH A 28 328 115 HOH HOH . L 8 HOH A 29 329 73 HOH HOH . L 8 HOH A 30 330 106 HOH HOH . L 8 HOH A 31 331 112 HOH HOH . L 8 HOH A 32 332 4 HOH HOH . L 8 HOH A 33 333 8 HOH HOH . L 8 HOH A 34 334 9 HOH HOH . L 8 HOH A 35 335 13 HOH HOH . L 8 HOH A 36 336 21 HOH HOH . L 8 HOH A 37 337 25 HOH HOH . L 8 HOH A 38 338 27 HOH HOH . L 8 HOH A 39 339 43 HOH HOH . L 8 HOH A 40 340 50 HOH HOH . L 8 HOH A 41 341 53 HOH HOH . L 8 HOH A 42 342 59 HOH HOH . L 8 HOH A 43 343 76 HOH HOH . L 8 HOH A 44 344 77 HOH HOH . L 8 HOH A 45 345 91 HOH HOH . L 8 HOH A 46 346 92 HOH HOH . L 8 HOH A 47 347 93 HOH HOH . L 8 HOH A 48 348 94 HOH HOH . L 8 HOH A 49 349 95 HOH HOH . L 8 HOH A 50 350 96 HOH HOH . L 8 HOH A 51 351 97 HOH HOH . L 8 HOH A 52 352 98 HOH HOH . L 8 HOH A 53 353 99 HOH HOH . L 8 HOH A 54 354 104 HOH HOH . L 8 HOH A 55 355 107 HOH HOH . L 8 HOH A 56 356 108 HOH HOH . L 8 HOH A 57 357 111 HOH HOH . L 8 HOH A 58 358 116 HOH HOH . L 8 HOH A 59 359 117 HOH HOH . L 8 HOH A 60 360 118 HOH HOH . L 8 HOH A 61 361 119 HOH HOH . L 8 HOH A 62 362 120 HOH HOH . L 8 HOH A 63 363 121 HOH HOH . L 8 HOH A 64 364 123 HOH HOH . L 8 HOH A 65 365 124 HOH HOH . L 8 HOH A 66 366 125 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 5 -36.285 -18.998 -1.772 1 57.66 ? C1 GOL 206 A 1 HETATM 2 O O1 GOL . . . G 5 -36.668 -20.08 -0.912 1 58.14 ? O1 GOL 206 A 1 HETATM 3 C C2 GOL . . . G 5 -35.488 -19.511 -2.958 1 58.86 ? C2 GOL 206 A 1 HETATM 4 O O2 GOL . . . G 5 -35.174 -20.903 -2.801 1 59.41 ? O2 GOL 206 A 1 HETATM 5 C C3 GOL . . . G 5 -36.324 -19.338 -4.216 1 60.67 ? C3 GOL 206 A 1 HETATM 6 O O3 GOL . . . G 5 -35.582 -19.898 -5.304 1 60.12 ? O3 GOL 206 A 1 # _model_server_stats.io_time_ms 103 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #