data_4XRJ # _model_server_result.job_id bgm3ML3JIZ2UZdIJZ1ML0Q _model_server_result.datetime_utc '2024-11-28 03:19:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xrj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4XRJ # _exptl.entry_id 4XRJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 296.327 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N~1~-[3-(benzyloxy)benzyl]-1H-tetrazole-1,5-diamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.7 _cell.angle_gamma 90 _cell.entry_id 4XRJ _cell.length_a 49.155 _cell.length_b 71.48 _cell.length_c 60.76 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XRJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C THR 150 A THR 158 1_555 A N CME 151 A CME 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C CME 151 A CME 159 1_555 A N ASP 152 A ASP 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale3 A C ASN 243 A ASN 251 1_555 A N CME 244 A CME 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale4 A C CME 244 A CME 252 1_555 A N ILE 245 A ILE 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C15 H16 N6 O' _chem_comp.formula_weight 296.327 _chem_comp.id 620 _chem_comp.mon_nstd_flag . _chem_comp.name N~1~-[3-(benzyloxy)benzyl]-1H-tetrazole-1,5-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAV CAT 620 doub 1 n y CAV CAU 620 sing 2 n y CAT CAS 620 sing 3 n y CAU CAR 620 doub 4 n y CAS CAN 620 doub 5 n y CAR CAN 620 sing 6 n y CAN CAM 620 sing 7 n n CAP CAO 620 doub 8 n y CAP CAJ 620 sing 9 n y CAM OAH 620 sing 10 n n OAH CAJ 620 sing 11 n n CAO CAQ 620 sing 12 n y CAJ CAK 620 doub 13 n y CAQ CAL 620 doub 14 n y CAK CAL 620 sing 15 n y CAL CAI 620 sing 16 n n CAI NAF 620 sing 17 n n NAF NAA 620 sing 18 n n NAG CAB 620 sing 19 n n NAA CAB 620 sing 20 n y NAA NAC 620 sing 21 n y CAB NAD 620 doub 22 n y NAC NAE 620 doub 23 n y NAD NAE 620 sing 24 n y CAR H1 620 sing 25 n n CAU H2 620 sing 26 n n CAV H3 620 sing 27 n n CAT H4 620 sing 28 n n CAS H5 620 sing 29 n n CAM H6 620 sing 30 n n CAM H7 620 sing 31 n n CAK H8 620 sing 32 n n CAP H9 620 sing 33 n n CAO H10 620 sing 34 n n CAQ H11 620 sing 35 n n CAI H12 620 sing 36 n n CAI H13 620 sing 37 n n NAF H14 620 sing 38 n n NAG H15 620 sing 39 n n NAG H16 620 sing 40 n n # _atom_sites.entry_id 4XRJ _atom_sites.fract_transf_matrix[1][1] 0.020344 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006886 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01399 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017375 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 620 A 1 401 1 620 620 . C 3 SO4 A 1 402 1 SO4 SO4 . D 4 HOH A 1 501 42 HOH HOH . D 4 HOH A 2 502 100 HOH HOH . D 4 HOH A 3 503 87 HOH HOH . D 4 HOH A 4 504 1 HOH HOH . D 4 HOH A 5 505 70 HOH HOH . D 4 HOH A 6 506 38 HOH HOH . D 4 HOH A 7 507 24 HOH HOH . D 4 HOH A 8 508 107 HOH HOH . D 4 HOH A 9 509 12 HOH HOH . D 4 HOH A 10 510 75 HOH HOH . D 4 HOH A 11 511 10 HOH HOH . D 4 HOH A 12 512 270 HOH HOH . D 4 HOH A 13 513 74 HOH HOH . D 4 HOH A 14 514 88 HOH HOH . D 4 HOH A 15 515 45 HOH HOH . D 4 HOH A 16 516 71 HOH HOH . D 4 HOH A 17 517 4 HOH HOH . D 4 HOH A 18 518 11 HOH HOH . D 4 HOH A 19 519 52 HOH HOH . D 4 HOH A 20 520 22 HOH HOH . D 4 HOH A 21 521 41 HOH HOH . D 4 HOH A 22 522 53 HOH HOH . D 4 HOH A 23 523 4 HOH HOH . D 4 HOH A 24 524 6 HOH HOH . D 4 HOH A 25 525 76 HOH HOH . D 4 HOH A 26 526 31 HOH HOH . D 4 HOH A 27 527 95 HOH HOH . D 4 HOH A 28 528 106 HOH HOH . D 4 HOH A 29 529 77 HOH HOH . D 4 HOH A 30 530 271 HOH HOH . D 4 HOH A 31 531 84 HOH HOH . D 4 HOH A 32 532 43 HOH HOH . D 4 HOH A 33 533 69 HOH HOH . D 4 HOH A 34 534 60 HOH HOH . D 4 HOH A 35 535 95 HOH HOH . D 4 HOH A 36 536 112 HOH HOH . D 4 HOH A 37 537 1 HOH HOH . D 4 HOH A 38 538 23 HOH HOH . D 4 HOH A 39 539 104 HOH HOH . D 4 HOH A 40 540 89 HOH HOH . D 4 HOH A 41 541 101 HOH HOH . D 4 HOH A 42 542 2 HOH HOH . D 4 HOH A 43 543 3 HOH HOH . D 4 HOH A 44 544 5 HOH HOH . D 4 HOH A 45 545 6 HOH HOH . D 4 HOH A 46 546 7 HOH HOH . D 4 HOH A 47 547 8 HOH HOH . D 4 HOH A 48 548 9 HOH HOH . D 4 HOH A 49 549 13 HOH HOH . D 4 HOH A 50 550 14 HOH HOH . D 4 HOH A 51 551 15 HOH HOH . D 4 HOH A 52 552 18 HOH HOH . D 4 HOH A 53 553 19 HOH HOH . D 4 HOH A 54 554 20 HOH HOH . D 4 HOH A 55 555 21 HOH HOH . D 4 HOH A 56 556 24 HOH HOH . D 4 HOH A 57 557 25 HOH HOH . D 4 HOH A 58 558 26 HOH HOH . D 4 HOH A 59 559 27 HOH HOH . D 4 HOH A 60 560 28 HOH HOH . D 4 HOH A 61 561 29 HOH HOH . D 4 HOH A 62 562 30 HOH HOH . D 4 HOH A 63 563 31 HOH HOH . D 4 HOH A 64 564 34 HOH HOH . D 4 HOH A 65 565 35 HOH HOH . D 4 HOH A 66 566 36 HOH HOH . D 4 HOH A 67 567 37 HOH HOH . D 4 HOH A 68 568 39 HOH HOH . D 4 HOH A 69 569 40 HOH HOH . D 4 HOH A 70 570 42 HOH HOH . D 4 HOH A 71 571 44 HOH HOH . D 4 HOH A 72 572 48 HOH HOH . D 4 HOH A 73 573 50 HOH HOH . D 4 HOH A 74 574 54 HOH HOH . D 4 HOH A 75 575 56 HOH HOH . D 4 HOH A 76 576 57 HOH HOH . D 4 HOH A 77 577 58 HOH HOH . D 4 HOH A 78 578 59 HOH HOH . D 4 HOH A 79 579 60 HOH HOH . D 4 HOH A 80 580 61 HOH HOH . D 4 HOH A 81 581 62 HOH HOH . D 4 HOH A 82 582 63 HOH HOH . D 4 HOH A 83 583 64 HOH HOH . D 4 HOH A 84 584 65 HOH HOH . D 4 HOH A 85 585 66 HOH HOH . D 4 HOH A 86 586 67 HOH HOH . D 4 HOH A 87 587 68 HOH HOH . D 4 HOH A 88 588 72 HOH HOH . D 4 HOH A 89 589 73 HOH HOH . D 4 HOH A 90 590 74 HOH HOH . D 4 HOH A 91 591 77 HOH HOH . D 4 HOH A 92 592 78 HOH HOH . D 4 HOH A 93 593 79 HOH HOH . D 4 HOH A 94 594 80 HOH HOH . D 4 HOH A 95 595 81 HOH HOH . D 4 HOH A 96 596 82 HOH HOH . D 4 HOH A 97 597 83 HOH HOH . D 4 HOH A 98 598 85 HOH HOH . D 4 HOH A 99 599 86 HOH HOH . D 4 HOH A 100 600 90 HOH HOH . D 4 HOH A 101 601 91 HOH HOH . D 4 HOH A 102 602 92 HOH HOH . D 4 HOH A 103 603 94 HOH HOH . D 4 HOH A 104 604 96 HOH HOH . D 4 HOH A 105 605 97 HOH HOH . D 4 HOH A 106 606 98 HOH HOH . D 4 HOH A 107 607 99 HOH HOH . D 4 HOH A 108 608 102 HOH HOH . D 4 HOH A 109 609 103 HOH HOH . D 4 HOH A 110 610 105 HOH HOH . D 4 HOH A 111 611 108 HOH HOH . D 4 HOH A 112 612 109 HOH HOH . D 4 HOH A 113 613 110 HOH HOH . D 4 HOH A 114 614 111 HOH HOH . D 4 HOH A 115 615 113 HOH HOH . D 4 HOH A 116 616 114 HOH HOH . D 4 HOH A 117 617 115 HOH HOH . D 4 HOH A 118 618 1 HOH HOH . D 4 HOH A 119 619 11 HOH HOH . D 4 HOH A 120 620 12 HOH HOH . D 4 HOH A 121 621 13 HOH HOH . D 4 HOH A 122 622 15 HOH HOH . D 4 HOH A 123 623 16 HOH HOH . D 4 HOH A 124 624 18 HOH HOH . D 4 HOH A 125 625 23 HOH HOH . D 4 HOH A 126 626 26 HOH HOH . D 4 HOH A 127 627 32 HOH HOH . D 4 HOH A 128 628 36 HOH HOH . D 4 HOH A 129 629 44 HOH HOH . D 4 HOH A 130 630 48 HOH HOH . D 4 HOH A 131 631 51 HOH HOH . D 4 HOH A 132 632 52 HOH HOH . D 4 HOH A 133 633 54 HOH HOH . D 4 HOH A 134 634 55 HOH HOH . D 4 HOH A 135 635 56 HOH HOH . D 4 HOH A 136 636 59 HOH HOH . D 4 HOH A 137 637 70 HOH HOH . D 4 HOH A 138 638 76 HOH HOH . D 4 HOH A 139 639 78 HOH HOH . D 4 HOH A 140 640 80 HOH HOH . D 4 HOH A 141 641 89 HOH HOH . D 4 HOH A 142 642 94 HOH HOH . D 4 HOH A 143 643 96 HOH HOH . D 4 HOH A 144 644 107 HOH HOH . D 4 HOH A 145 645 117 HOH HOH . D 4 HOH A 146 646 119 HOH HOH . D 4 HOH A 147 647 150 HOH HOH . D 4 HOH A 148 648 164 HOH HOH . D 4 HOH A 149 649 301 HOH HOH . D 4 HOH A 150 650 310 HOH HOH . D 4 HOH A 151 651 15 HOH HOH . D 4 HOH A 152 652 27 HOH HOH . D 4 HOH A 153 653 48 HOH HOH . D 4 HOH A 154 654 70 HOH HOH . D 4 HOH A 155 655 34 HOH HOH . D 4 HOH A 156 656 40 HOH HOH . D 4 HOH A 157 657 46 HOH HOH . D 4 HOH A 158 658 66 HOH HOH . D 4 HOH A 159 659 1 HOH HOH . D 4 HOH A 160 660 2 HOH HOH . D 4 HOH A 161 661 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAR 620 . . . B 2 -8.685 9.664 36.188 1 21.2 ? CAR 620 401 A 1 HETATM 2 C CAU 620 . . . B 2 -7.702 9.171 35.328 1 21.68 ? CAU 620 401 A 1 HETATM 3 C CAV 620 . . . B 2 -6.815 10.061 34.726 1 21.11 ? CAV 620 401 A 1 HETATM 4 C CAT 620 . . . B 2 -6.908 11.406 34.974 1 22.85 ? CAT 620 401 A 1 HETATM 5 C CAS 620 . . . B 2 -7.901 11.914 35.809 1 25.13 ? CAS 620 401 A 1 HETATM 6 C CAN 620 . . . B 2 -8.803 11.046 36.422 1 22.19 ? CAN 620 401 A 1 HETATM 7 C CAM 620 . . . B 2 -9.761 11.566 37.276 1 19.63 ? CAM 620 401 A 1 HETATM 8 O OAH 620 . . . B 2 -11.006 11.521 36.585 1 20.39 ? OAH 620 401 A 1 HETATM 9 C CAJ 620 . . . B 2 -12.15 11.982 37.202 1 18.49 ? CAJ 620 401 A 1 HETATM 10 C CAK 620 . . . B 2 -12.161 12.662 38.441 1 18.43 ? CAK 620 401 A 1 HETATM 11 C CAP 620 . . . B 2 -13.347 11.795 36.526 1 19.69 ? CAP 620 401 A 1 HETATM 12 C CAO 620 . . . B 2 -14.556 12.252 37.066 1 17.97 ? CAO 620 401 A 1 HETATM 13 C CAQ 620 . . . B 2 -14.566 12.914 38.307 1 20.62 ? CAQ 620 401 A 1 HETATM 14 C CAL 620 . . . B 2 -13.356 13.121 39.007 1 17.61 ? CAL 620 401 A 1 HETATM 15 C CAI 620 . . . B 2 -13.3 13.783 40.247 1 20.73 ? CAI 620 401 A 1 HETATM 16 N NAF 620 . . . B 2 -13.915 12.926 41.296 1 20.24 ? NAF 620 401 A 1 HETATM 17 N NAA 620 . . . B 2 -15.203 12.929 41.526 1 20.71 ? NAA 620 401 A 1 HETATM 18 N NAC 620 . . . B 2 -15.917 13.945 41.953 1 20.96 ? NAC 620 401 A 1 HETATM 19 N NAE 620 . . . B 2 -17.115 13.588 42.051 1 21.32 ? NAE 620 401 A 1 HETATM 20 N NAD 620 . . . B 2 -17.246 12.32 41.712 1 19.37 ? NAD 620 401 A 1 HETATM 21 C CAB 620 . . . B 2 -16.04 11.914 41.384 1 17.25 ? CAB 620 401 A 1 HETATM 22 N NAG 620 . . . B 2 -15.737 10.68 40.967 1 18.64 ? NAG 620 401 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 724 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 22 #