data_4XRL # _model_server_result.job_id tqVZRwtMGb-u3FAEogjw9A _model_server_result.datetime_utc '2024-11-15 00:15:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xrl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 4XRL # _exptl.entry_id 4XRL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 143.145 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1H-pyrrolo[2,3-b]pyridine-3-carbonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.48 _cell.angle_gamma 90 _cell.entry_id 4XRL _cell.length_a 48.479 _cell.length_b 70.786 _cell.length_c 60.489 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XRL _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C THR 150 A THR 158 1_555 A N CME 151 A CME 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale2 A C CME 151 A CME 159 1_555 A N ASP 152 A ASP 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C8 H5 N3' _chem_comp.formula_weight 143.145 _chem_comp.id 42A _chem_comp.mon_nstd_flag . _chem_comp.name 1H-pyrrolo[2,3-b]pyridine-3-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag NAA CAB 42A trip 1 n n CAB CAI 42A sing 2 n n CAF CAI 42A doub 3 n y CAF NAH 42A sing 4 n y CAI CAJ 42A sing 5 n y NAH CAK 42A sing 6 n y CAJ CAK 42A doub 7 n y CAJ CAE 42A sing 8 n y CAK NAG 42A sing 9 n y CAE CAC 42A doub 10 n y NAG CAD 42A doub 11 n y CAC CAD 42A sing 12 n y CAE H1 42A sing 13 n n CAC H2 42A sing 14 n n CAD H3 42A sing 15 n n NAH H4 42A sing 16 n n CAF H5 42A sing 17 n n # _atom_sites.entry_id 4XRL _atom_sites.fract_transf_matrix[1][1] 0.020627 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007296 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014127 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017536 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 401 1 SO4 SO4 . C 3 42A A 1 402 1 42A 758 . D 4 HOH A 1 501 465 HOH HOH . D 4 HOH A 2 502 435 HOH HOH . D 4 HOH A 3 503 497 HOH HOH . D 4 HOH A 4 504 648 HOH HOH . D 4 HOH A 5 505 531 HOH HOH . D 4 HOH A 6 506 774 HOH HOH . D 4 HOH A 7 507 516 HOH HOH . D 4 HOH A 8 508 507 HOH HOH . D 4 HOH A 9 509 394 HOH HOH . D 4 HOH A 10 510 494 HOH HOH . D 4 HOH A 11 511 433 HOH HOH . D 4 HOH A 12 512 434 HOH HOH . D 4 HOH A 13 513 417 HOH HOH . D 4 HOH A 14 514 483 HOH HOH . D 4 HOH A 15 515 682 HOH HOH . D 4 HOH A 16 516 545 HOH HOH . D 4 HOH A 17 517 491 HOH HOH . D 4 HOH A 18 518 412 HOH HOH . D 4 HOH A 19 519 486 HOH HOH . D 4 HOH A 20 520 751 HOH HOH . D 4 HOH A 21 521 436 HOH HOH . D 4 HOH A 22 522 490 HOH HOH . D 4 HOH A 23 523 649 HOH HOH . D 4 HOH A 24 524 472 HOH HOH . D 4 HOH A 25 525 707 HOH HOH . D 4 HOH A 26 526 653 HOH HOH . D 4 HOH A 27 527 466 HOH HOH . D 4 HOH A 28 528 439 HOH HOH . D 4 HOH A 29 529 377 HOH HOH . D 4 HOH A 30 530 706 HOH HOH . D 4 HOH A 31 531 573 HOH HOH . D 4 HOH A 32 532 438 HOH HOH . D 4 HOH A 33 533 720 HOH HOH . D 4 HOH A 34 534 781 HOH HOH . D 4 HOH A 35 535 504 HOH HOH . D 4 HOH A 36 536 474 HOH HOH . D 4 HOH A 37 537 501 HOH HOH . D 4 HOH A 38 538 780 HOH HOH . D 4 HOH A 39 539 500 HOH HOH . D 4 HOH A 40 540 655 HOH HOH . D 4 HOH A 41 541 783 HOH HOH . D 4 HOH A 42 542 782 HOH HOH . D 4 HOH A 43 543 779 HOH HOH . D 4 HOH A 44 544 448 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N NAA 42A . . . C 3 -12.786 13.351 39.535 1 55.3 ? NAA 42A 402 A 1 HETATM 2 C CAB 42A . . . C 3 -13.864 12.845 39.848 1 60.24 ? CAB 42A 402 A 1 HETATM 3 C CAI 42A . . . C 3 -15.191 12.221 40.235 1 51.88 ? CAI 42A 402 A 1 HETATM 4 C CAJ 42A . . . C 3 -16.159 12.814 40.936 1 48.61 ? CAJ 42A 402 A 1 HETATM 5 C CAE 42A . . . C 3 -16.245 14.031 41.47 1 44.28 ? CAE 42A 402 A 1 HETATM 6 C CAC 42A . . . C 3 -17.383 14.4 42.17 1 52.24 ? CAC 42A 402 A 1 HETATM 7 C CAD 42A . . . C 3 -18.42 13.481 42.297 1 48.93 ? CAD 42A 402 A 1 HETATM 8 N NAG 42A . . . C 3 -18.277 12.22 41.713 1 42.29 ? NAG 42A 402 A 1 HETATM 9 C CAK 42A . . . C 3 -17.151 11.927 41.055 1 42.34 ? CAK 42A 402 A 1 HETATM 10 N NAH 42A . . . C 3 -16.781 10.815 40.43 1 47.97 ? NAH 42A 402 A 1 HETATM 11 C CAF 42A . . . C 3 -15.562 10.99 39.916 1 43.62 ? CAF 42A 402 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 394 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 11 #