data_4XRQ # _model_server_result.job_id PMTYJ1_SeyGB8BJblnTb1g _model_server_result.datetime_utc '2024-10-26 18:22:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xrq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4XRQ # _exptl.entry_id 4XRQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 425.522 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-METHYL-NALPHA-[(2-METHYL-1H-INDOL-3-YL)ACETYL]-N-PHENYL-L-PHENYLALANINAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4XRQ _cell.length_a 90.35 _cell.length_b 90.35 _cell.length_c 56.93 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XRQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 168 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 6' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 5 'crystal symmetry operation' 5_555 y,-x+y,z 0.5 0.866025 0 -0.866025 0.5 0 0 0 1 0 0 0 6 'crystal symmetry operation' 6_555 x-y,x,z 0.5 -0.866025 0 0.866025 0.5 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 14 A CYS 14 1_555 A SG CYS 45 A CYS 45 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? disulf ? disulf2 A SG CYS 198 A CYS 198 1_555 A SG CYS 218 A CYS 218 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.054 ? # _chem_comp.formula 'C27 H27 N3 O2' _chem_comp.formula_weight 425.522 _chem_comp.id 1B0 _chem_comp.mon_nstd_flag . _chem_comp.name N-METHYL-NALPHA-[(2-METHYL-1H-INDOL-3-YL)ACETYL]-N-PHENYL-L-PHENYLALANINAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O24 C23 1B0 doub 1 n n C23 N4 1B0 sing 2 n n C23 C25 1B0 sing 3 n n N4 C5 1B0 sing 4 n n C5 C13 1B0 sing 5 n n C5 C6 1B0 sing 6 n n C13 N15 1B0 sing 7 n n C13 O14 1B0 doub 8 n n N15 C17 1B0 sing 9 n n N15 C16 1B0 sing 10 n n C17 C22 1B0 sing 11 n y C17 C18 1B0 doub 12 n y C22 C21 1B0 doub 13 n y C21 C20 1B0 sing 14 n y C20 C19 1B0 doub 15 n y C19 C18 1B0 sing 16 n y C6 C7 1B0 sing 17 n n C7 C12 1B0 sing 18 n y C7 C8 1B0 doub 19 n y C12 C11 1B0 doub 20 n y C11 C10 1B0 sing 21 n y C10 C9 1B0 doub 22 n y C9 C8 1B0 sing 23 n y C25 C1 1B0 sing 24 n n C1 C26 1B0 sing 25 n y C1 C2 1B0 doub 26 n y C26 C31 1B0 sing 27 n y C26 C27 1B0 doub 28 n y C31 C30 1B0 doub 29 n y C30 C29 1B0 sing 30 n y C29 C28 1B0 doub 31 n y C28 C27 1B0 sing 32 n y C27 N3 1B0 sing 33 n y N3 C2 1B0 sing 34 n y C2 C32 1B0 sing 35 n n N4 H4 1B0 sing 36 n n C25 H251 1B0 sing 37 n n C25 H252 1B0 sing 38 n n C5 H5 1B0 sing 39 n n C6 H61C 1B0 sing 40 n n C6 H62C 1B0 sing 41 n n C16 H161 1B0 sing 42 n n C16 H162 1B0 sing 43 n n C16 H163 1B0 sing 44 n n C22 H22 1B0 sing 45 n n C18 H18 1B0 sing 46 n n C21 H21 1B0 sing 47 n n C20 H20 1B0 sing 48 n n C19 H19 1B0 sing 49 n n C12 H12 1B0 sing 50 n n C8 H8 1B0 sing 51 n n C11 H11 1B0 sing 52 n n C10 H10 1B0 sing 53 n n C9 H9 1B0 sing 54 n n C31 H31 1B0 sing 55 n n C30 H30 1B0 sing 56 n n C29 H29 1B0 sing 57 n n C28 H28 1B0 sing 58 n n N3 H3 1B0 sing 59 n n C32 H321 1B0 sing 60 n n C32 H322 1B0 sing 61 n n C32 H323 1B0 sing 62 n n # _atom_sites.entry_id 4XRQ _atom_sites.fract_transf_matrix[1][1] 0.011068 _atom_sites.fract_transf_matrix[1][2] 0.00639 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01278 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017565 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1B0 A 1 301 1148 1B0 1B0 . C 3 HOH A 1 401 27 HOH HOH . C 3 HOH A 2 402 31 HOH HOH . C 3 HOH A 3 403 72 HOH HOH . C 3 HOH A 4 404 1 HOH HOH . C 3 HOH A 5 405 53 HOH HOH . C 3 HOH A 6 406 90 HOH HOH . C 3 HOH A 7 407 34 HOH HOH . C 3 HOH A 8 408 65 HOH HOH . C 3 HOH A 9 409 60 HOH HOH . C 3 HOH A 10 410 50 HOH HOH . C 3 HOH A 11 411 23 HOH HOH . C 3 HOH A 12 412 76 HOH HOH . C 3 HOH A 13 413 49 HOH HOH . C 3 HOH A 14 414 3 HOH HOH . C 3 HOH A 15 415 40 HOH HOH . C 3 HOH A 16 416 64 HOH HOH . C 3 HOH A 17 417 16 HOH HOH . C 3 HOH A 18 418 83 HOH HOH . C 3 HOH A 19 419 41 HOH HOH . C 3 HOH A 20 420 67 HOH HOH . C 3 HOH A 21 421 10 HOH HOH . C 3 HOH A 22 422 87 HOH HOH . C 3 HOH A 23 423 26 HOH HOH . C 3 HOH A 24 424 46 HOH HOH . C 3 HOH A 25 425 21 HOH HOH . C 3 HOH A 26 426 24 HOH HOH . C 3 HOH A 27 427 8 HOH HOH . C 3 HOH A 28 428 22 HOH HOH . C 3 HOH A 29 429 55 HOH HOH . C 3 HOH A 30 430 85 HOH HOH . C 3 HOH A 31 431 17 HOH HOH . C 3 HOH A 32 432 62 HOH HOH . C 3 HOH A 33 433 66 HOH HOH . C 3 HOH A 34 434 15 HOH HOH . C 3 HOH A 35 435 43 HOH HOH . C 3 HOH A 36 436 69 HOH HOH . C 3 HOH A 37 437 89 HOH HOH . C 3 HOH A 38 438 61 HOH HOH . C 3 HOH A 39 439 2 HOH HOH . C 3 HOH A 40 440 4 HOH HOH . C 3 HOH A 41 441 5 HOH HOH . C 3 HOH A 42 442 6 HOH HOH . C 3 HOH A 43 443 7 HOH HOH . C 3 HOH A 44 444 9 HOH HOH . C 3 HOH A 45 445 11 HOH HOH . C 3 HOH A 46 446 12 HOH HOH . C 3 HOH A 47 447 13 HOH HOH . C 3 HOH A 48 448 14 HOH HOH . C 3 HOH A 49 449 18 HOH HOH . C 3 HOH A 50 450 19 HOH HOH . C 3 HOH A 51 451 20 HOH HOH . C 3 HOH A 52 452 25 HOH HOH . C 3 HOH A 53 453 28 HOH HOH . C 3 HOH A 54 454 29 HOH HOH . C 3 HOH A 55 455 30 HOH HOH . C 3 HOH A 56 456 32 HOH HOH . C 3 HOH A 57 457 33 HOH HOH . C 3 HOH A 58 458 35 HOH HOH . C 3 HOH A 59 459 36 HOH HOH . C 3 HOH A 60 460 37 HOH HOH . C 3 HOH A 61 461 38 HOH HOH . C 3 HOH A 62 462 39 HOH HOH . C 3 HOH A 63 463 42 HOH HOH . C 3 HOH A 64 464 44 HOH HOH . C 3 HOH A 65 465 45 HOH HOH . C 3 HOH A 66 466 47 HOH HOH . C 3 HOH A 67 467 48 HOH HOH . C 3 HOH A 68 468 51 HOH HOH . C 3 HOH A 69 469 52 HOH HOH . C 3 HOH A 70 470 54 HOH HOH . C 3 HOH A 71 471 56 HOH HOH . C 3 HOH A 72 472 57 HOH HOH . C 3 HOH A 73 473 58 HOH HOH . C 3 HOH A 74 474 59 HOH HOH . C 3 HOH A 75 475 63 HOH HOH . C 3 HOH A 76 476 68 HOH HOH . C 3 HOH A 77 477 70 HOH HOH . C 3 HOH A 78 478 71 HOH HOH . C 3 HOH A 79 479 73 HOH HOH . C 3 HOH A 80 480 74 HOH HOH . C 3 HOH A 81 481 75 HOH HOH . C 3 HOH A 82 482 77 HOH HOH . C 3 HOH A 83 483 78 HOH HOH . C 3 HOH A 84 484 79 HOH HOH . C 3 HOH A 85 485 80 HOH HOH . C 3 HOH A 86 486 81 HOH HOH . C 3 HOH A 87 487 82 HOH HOH . C 3 HOH A 88 488 84 HOH HOH . C 3 HOH A 89 489 86 HOH HOH . C 3 HOH A 90 490 88 HOH HOH . C 3 HOH A 91 491 91 HOH HOH . C 3 HOH A 92 492 92 HOH HOH . C 3 HOH A 93 493 93 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O24 1B0 . . . B 2 31.181 -0.689 -0.287 1 33.76 ? O24 1B0 301 A 1 HETATM 2 C C23 1B0 . . . B 2 29.994 -0.493 -0.082 1 37.99 ? C23 1B0 301 A 1 HETATM 3 N N4 1B0 . . . B 2 29.025 -1.057 -0.802 1 32.25 ? N4 1B0 301 A 1 HETATM 4 C C5 1B0 . . . B 2 29.261 -1.951 -1.922 1 30.9 ? C5 1B0 301 A 1 HETATM 5 C C13 1B0 . . . B 2 29.367 -1.105 -3.174 1 36.12 ? C13 1B0 301 A 1 HETATM 6 N N15 1B0 . . . B 2 30.222 -1.422 -4.155 1 34.63 ? N15 1B0 301 A 1 HETATM 7 C C17 1B0 . . . B 2 31.042 -2.551 -4.011 1 38.37 ? C17 1B0 301 A 1 HETATM 8 C C22 1B0 . . . B 2 30.654 -3.777 -4.556 1 36.09 ? C22 1B0 301 A 1 HETATM 9 C C21 1B0 . . . B 2 31.473 -4.897 -4.408 1 36.69 ? C21 1B0 301 A 1 HETATM 10 C C20 1B0 . . . B 2 32.679 -4.795 -3.711 1 39.11 ? C20 1B0 301 A 1 HETATM 11 C C19 1B0 . . . B 2 33.067 -3.57 -3.166 1 38.92 ? C19 1B0 301 A 1 HETATM 12 C C18 1B0 . . . B 2 32.253 -2.445 -3.319 1 38.75 ? C18 1B0 301 A 1 HETATM 13 C C16 1B0 . . . B 2 30.371 -0.652 -5.387 1 39.71 ? C16 1B0 301 A 1 HETATM 14 O O14 1B0 . . . B 2 28.644 -0.125 -3.269 1 30.49 ? O14 1B0 301 A 1 HETATM 15 C C6 1B0 . . . B 2 28.066 -2.902 -2.028 1 31.02 ? C6 1B0 301 A 1 HETATM 16 C C7 1B0 . . . B 2 28.042 -3.881 -0.87 1 30.15 ? C7 1B0 301 A 1 HETATM 17 C C12 1B0 . . . B 2 28.7 -5.101 -0.978 1 29.71 ? C12 1B0 301 A 1 HETATM 18 C C11 1B0 . . . B 2 28.676 -5.998 0.089 1 33.56 ? C11 1B0 301 A 1 HETATM 19 C C10 1B0 . . . B 2 28.007 -5.677 1.266 1 27.58 ? C10 1B0 301 A 1 HETATM 20 C C9 1B0 . . . B 2 27.356 -4.453 1.381 1 30.25 ? C9 1B0 301 A 1 HETATM 21 C C8 1B0 . . . B 2 27.373 -3.564 0.311 1 27.44 ? C8 1B0 301 A 1 HETATM 22 C C25 1B0 . . . B 2 29.53 0.451 1.009 1 43.6 ? C25 1B0 301 A 1 HETATM 23 C C1 1B0 . . . B 2 30.049 0.12 2.383 1 41.81 ? C1 1B0 301 A 1 HETATM 24 C C26 1B0 . . . B 2 31.319 0.56 2.992 1 42.7 ? C26 1B0 301 A 1 HETATM 25 C C31 1B0 . . . B 2 32.339 1.343 2.465 1 43.55 ? C31 1B0 301 A 1 HETATM 26 C C30 1B0 . . . B 2 33.454 1.608 3.257 1 49.86 ? C30 1B0 301 A 1 HETATM 27 C C29 1B0 . . . B 2 33.53 1.087 4.55 1 43.83 ? C29 1B0 301 A 1 HETATM 28 C C28 1B0 . . . B 2 32.501 0.296 5.061 1 42.51 ? C28 1B0 301 A 1 HETATM 29 C C27 1B0 . . . B 2 31.379 0.025 4.275 1 44.55 ? C27 1B0 301 A 1 HETATM 30 N N3 1B0 . . . B 2 30.248 -0.697 4.514 1 46.37 ? N3 1B0 301 A 1 HETATM 31 C C2 1B0 . . . B 2 29.405 -0.691 3.448 1 44.13 ? C2 1B0 301 A 1 HETATM 32 C C32 1B0 . . . B 2 28.071 -1.383 3.361 1 35.1 ? C32 1B0 301 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 50 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 232 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 32 #