data_4XRX # _model_server_result.job_id 0hWb-MW-dmegIIoSlU9lWw _model_server_result.datetime_utc '2024-10-19 05:24:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xrx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 4XRX # _exptl.entry_id 4XRX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XRX _cell.length_a 82.405 _cell.length_b 82.405 _cell.length_c 304.301 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XRX _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 261 n n PA O2A NDP sing 262 n n PA O5B NDP sing 263 n n PA O3 NDP sing 264 n n O2A HOA2 NDP sing 265 n n O5B C5B NDP sing 266 n n C5B C4B NDP sing 267 n n C5B H51A NDP sing 268 n n C5B H52A NDP sing 269 n n C4B O4B NDP sing 270 n n C4B C3B NDP sing 271 n n C4B H4B NDP sing 272 n n O4B C1B NDP sing 273 n n C3B O3B NDP sing 274 n n C3B C2B NDP sing 275 n n C3B H3B NDP sing 276 n n O3B HO3A NDP sing 277 n n C2B O2B NDP sing 278 n n C2B C1B NDP sing 279 n n C2B H2B NDP sing 280 n n O2B P2B NDP sing 281 n n C1B N9A NDP sing 282 n n C1B H1B NDP sing 283 n n N9A C8A NDP sing 284 n y N9A C4A NDP sing 285 n y C8A N7A NDP doub 286 n y C8A H8A NDP sing 287 n n N7A C5A NDP sing 288 n y C5A C6A NDP sing 289 n y C5A C4A NDP doub 290 n y C6A N6A NDP sing 291 n n C6A N1A NDP doub 292 n y N6A H61A NDP sing 293 n n N6A H62A NDP sing 294 n n N1A C2A NDP sing 295 n y C2A N3A NDP doub 296 n y C2A H2A NDP sing 297 n n N3A C4A NDP sing 298 n y O3 PN NDP sing 299 n n PN O1N NDP doub 300 n n PN O2N NDP sing 301 n n PN O5D NDP sing 302 n n O2N H21N NDP sing 303 n n O5D C5D NDP sing 304 n n C5D C4D NDP sing 305 n n C5D H51N NDP sing 306 n n C5D H52N NDP sing 307 n n C4D O4D NDP sing 308 n n C4D C3D NDP sing 309 n n C4D H4D NDP sing 310 n n O4D C1D NDP sing 311 n n C3D O3D NDP sing 312 n n C3D C2D NDP sing 313 n n C3D H3D NDP sing 314 n n O3D HO3N NDP sing 315 n n C2D O2D NDP sing 316 n n C2D C1D NDP sing 317 n n C2D H2D NDP sing 318 n n O2D HO2N NDP sing 319 n n C1D N1N NDP sing 320 n n C1D H1D NDP sing 321 n n N1N C2N NDP sing 322 n n N1N C6N NDP sing 323 n n C2N C3N NDP doub 324 n n C2N H2N NDP sing 325 n n C3N C7N NDP sing 326 n n C3N C4N NDP sing 327 n n C7N O7N NDP doub 328 n n C7N N7N NDP sing 329 n n N7N H71N NDP sing 330 n n N7N H72N NDP sing 331 n n C4N C5N NDP sing 332 n n C4N H41N NDP sing 333 n n C4N H42N NDP sing 334 n n C5N C6N NDP doub 335 n n C5N H5N NDP sing 336 n n C6N H6N NDP sing 337 n n P2B O1X NDP doub 338 n n P2B O2X NDP sing 339 n n P2B O3X NDP sing 340 n n O2X HOP2 NDP sing 341 n n O3X HOP3 NDP sing 342 n n # _atom_sites.entry_id 4XRX _atom_sites.fract_transf_matrix[1][1] 0.012135 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012135 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003286 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 501 501 NDP NDP . D 3 42V A 1 502 1 42V UNK . E 2 NDP B 1 501 502 NDP NDP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . C 2 28.901 -16.279 -14.394 1 32.52 ? PA NDP 501 A 1 HETATM 2 O O1A NDP . . . C 2 29.029 -14.798 -14.181 1 32.33 ? O1A NDP 501 A 1 HETATM 3 O O2A NDP . . . C 2 28.792 -16.849 -15.796 1 32.77 ? O2A NDP 501 A 1 HETATM 4 O O5B NDP . . . C 2 27.571 -16.667 -13.596 1 33.82 ? O5B NDP 501 A 1 HETATM 5 C C5B NDP . . . C 2 27.428 -17.711 -12.654 1 33.7 ? C5B NDP 501 A 1 HETATM 6 C C4B NDP . . . C 2 25.971 -17.64 -12.268 1 35.03 ? C4B NDP 501 A 1 HETATM 7 O O4B NDP . . . C 2 25.487 -16.311 -11.983 1 34.57 ? O4B NDP 501 A 1 HETATM 8 C C3B NDP . . . C 2 25.144 -18.083 -13.446 1 36.67 ? C3B NDP 501 A 1 HETATM 9 O O3B NDP . . . C 2 25.242 -19.492 -13.582 1 40.61 ? O3B NDP 501 A 1 HETATM 10 C C2B NDP . . . C 2 23.794 -17.563 -13.022 1 37.32 ? C2B NDP 501 A 1 HETATM 11 O O2B NDP . . . C 2 23.341 -18.326 -11.915 1 40.11 ? O2B NDP 501 A 1 HETATM 12 C C1B NDP . . . C 2 24.149 -16.183 -12.503 1 36.23 ? C1B NDP 501 A 1 HETATM 13 N N9A NDP . . . C 2 24.163 -15.287 -13.688 1 36.38 ? N9A NDP 501 A 1 HETATM 14 C C8A NDP . . . C 2 25.268 -14.648 -14.128 1 36.23 ? C8A NDP 501 A 1 HETATM 15 N N7A NDP . . . C 2 25.015 -13.931 -15.246 1 35.7 ? N7A NDP 501 A 1 HETATM 16 C C5A NDP . . . C 2 23.724 -14.096 -15.534 1 34.68 ? C5A NDP 501 A 1 HETATM 17 C C6A NDP . . . C 2 22.849 -13.585 -16.587 1 34.67 ? C6A NDP 501 A 1 HETATM 18 N N6A NDP . . . C 2 23.393 -12.756 -17.501 1 33.67 ? N6A NDP 501 A 1 HETATM 19 N N1A NDP . . . C 2 21.545 -13.968 -16.575 1 35.52 ? N1A NDP 501 A 1 HETATM 20 C C2A NDP . . . C 2 21.062 -14.799 -15.624 1 34.98 ? C2A NDP 501 A 1 HETATM 21 N N3A NDP . . . C 2 21.824 -15.308 -14.628 1 35.41 ? N3A NDP 501 A 1 HETATM 22 C C4A NDP . . . C 2 23.146 -14.994 -14.523 1 35.48 ? C4A NDP 501 A 1 HETATM 23 O O3 NDP . . . C 2 30.094 -16.986 -13.592 1 30.05 ? O3 NDP 501 A 1 HETATM 24 P PN NDP . . . C 2 30.648 -18.452 -13.935 1 28.48 ? PN NDP 501 A 1 HETATM 25 O O1N NDP . . . C 2 31.692 -18.598 -12.854 1 29.76 ? O1N NDP 501 A 1 HETATM 26 O O2N NDP . . . C 2 29.522 -19.446 -14.141 1 26.9 ? O2N NDP 501 A 1 HETATM 27 O O5D NDP . . . C 2 31.462 -18.261 -15.319 1 30.25 ? O5D NDP 501 A 1 HETATM 28 C C5D NDP . . . C 2 32.071 -19.334 -16.069 1 30.68 ? C5D NDP 501 A 1 HETATM 29 C C4D NDP . . . C 2 33.124 -18.758 -17.026 1 30.35 ? C4D NDP 501 A 1 HETATM 30 O O4D NDP . . . C 2 32.917 -17.342 -17.122 1 30.98 ? O4D NDP 501 A 1 HETATM 31 C C3D NDP . . . C 2 34.564 -18.929 -16.534 1 30.75 ? C3D NDP 501 A 1 HETATM 32 O O3D NDP . . . C 2 35.426 -19.594 -17.494 1 29 ? O3D NDP 501 A 1 HETATM 33 C C2D NDP . . . C 2 35.014 -17.512 -16.18 1 30.27 ? C2D NDP 501 A 1 HETATM 34 O O2D NDP . . . C 2 36.418 -17.284 -16.362 1 29.18 ? O2D NDP 501 A 1 HETATM 35 C C1D NDP . . . C 2 34.156 -16.647 -17.088 1 31.43 ? C1D NDP 501 A 1 HETATM 36 N N1N NDP . . . C 2 34.003 -15.259 -16.632 1 33.95 ? N1N NDP 501 A 1 HETATM 37 C C2N NDP . . . C 2 34.375 -14.266 -17.463 1 34.79 ? C2N NDP 501 A 1 HETATM 38 C C3N NDP . . . C 2 34.265 -12.91 -17.102 1 35.48 ? C3N NDP 501 A 1 HETATM 39 C C7N NDP . . . C 2 34.701 -11.832 -18.063 1 36.1 ? C7N NDP 501 A 1 HETATM 40 O O7N NDP . . . C 2 34.465 -10.658 -17.814 1 35.11 ? O7N NDP 501 A 1 HETATM 41 N N7N NDP . . . C 2 35.36 -12.193 -19.171 1 37.73 ? N7N NDP 501 A 1 HETATM 42 C C4N NDP . . . C 2 33.726 -12.508 -15.746 1 34.59 ? C4N NDP 501 A 1 HETATM 43 C C5N NDP . . . C 2 33.36 -13.674 -14.94 1 34.46 ? C5N NDP 501 A 1 HETATM 44 C C6N NDP . . . C 2 33.508 -14.983 -15.408 1 34.74 ? C6N NDP 501 A 1 HETATM 45 P P2B NDP . . . C 2 22.225 -19.472 -12.061 1 42.58 ? P2B NDP 501 A 1 HETATM 46 O O1X NDP . . . C 2 21.744 -19.626 -10.64 1 44.93 ? O1X NDP 501 A 1 HETATM 47 O O2X NDP . . . C 2 21.216 -18.887 -13.037 1 42.16 ? O2X NDP 501 A 1 HETATM 48 O O3X NDP . . . C 2 22.987 -20.675 -12.537 1 41.04 ? O3X NDP 501 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #