data_4XRX # _model_server_result.job_id rD_v_AiAfzIJh9lHhWxHBQ _model_server_result.datetime_utc '2025-07-02 09:48:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xrx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 4XRX # _exptl.entry_id 4XRX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4XRX _cell.length_a 82.405 _cell.length_b 82.405 _cell.length_c 304.301 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XRX _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 261 n n PA O2A NDP sing 262 n n PA O5B NDP sing 263 n n PA O3 NDP sing 264 n n O2A HOA2 NDP sing 265 n n O5B C5B NDP sing 266 n n C5B C4B NDP sing 267 n n C5B H51A NDP sing 268 n n C5B H52A NDP sing 269 n n C4B O4B NDP sing 270 n n C4B C3B NDP sing 271 n n C4B H4B NDP sing 272 n n O4B C1B NDP sing 273 n n C3B O3B NDP sing 274 n n C3B C2B NDP sing 275 n n C3B H3B NDP sing 276 n n O3B HO3A NDP sing 277 n n C2B O2B NDP sing 278 n n C2B C1B NDP sing 279 n n C2B H2B NDP sing 280 n n O2B P2B NDP sing 281 n n C1B N9A NDP sing 282 n n C1B H1B NDP sing 283 n n N9A C8A NDP sing 284 n y N9A C4A NDP sing 285 n y C8A N7A NDP doub 286 n y C8A H8A NDP sing 287 n n N7A C5A NDP sing 288 n y C5A C6A NDP sing 289 n y C5A C4A NDP doub 290 n y C6A N6A NDP sing 291 n n C6A N1A NDP doub 292 n y N6A H61A NDP sing 293 n n N6A H62A NDP sing 294 n n N1A C2A NDP sing 295 n y C2A N3A NDP doub 296 n y C2A H2A NDP sing 297 n n N3A C4A NDP sing 298 n y O3 PN NDP sing 299 n n PN O1N NDP doub 300 n n PN O2N NDP sing 301 n n PN O5D NDP sing 302 n n O2N H21N NDP sing 303 n n O5D C5D NDP sing 304 n n C5D C4D NDP sing 305 n n C5D H51N NDP sing 306 n n C5D H52N NDP sing 307 n n C4D O4D NDP sing 308 n n C4D C3D NDP sing 309 n n C4D H4D NDP sing 310 n n O4D C1D NDP sing 311 n n C3D O3D NDP sing 312 n n C3D C2D NDP sing 313 n n C3D H3D NDP sing 314 n n O3D HO3N NDP sing 315 n n C2D O2D NDP sing 316 n n C2D C1D NDP sing 317 n n C2D H2D NDP sing 318 n n O2D HO2N NDP sing 319 n n C1D N1N NDP sing 320 n n C1D H1D NDP sing 321 n n N1N C2N NDP sing 322 n n N1N C6N NDP sing 323 n n C2N C3N NDP doub 324 n n C2N H2N NDP sing 325 n n C3N C7N NDP sing 326 n n C3N C4N NDP sing 327 n n C7N O7N NDP doub 328 n n C7N N7N NDP sing 329 n n N7N H71N NDP sing 330 n n N7N H72N NDP sing 331 n n C4N C5N NDP sing 332 n n C4N H41N NDP sing 333 n n C4N H42N NDP sing 334 n n C5N C6N NDP doub 335 n n C5N H5N NDP sing 336 n n C6N H6N NDP sing 337 n n P2B O1X NDP doub 338 n n P2B O2X NDP sing 339 n n P2B O3X NDP sing 340 n n O2X HOP2 NDP sing 341 n n O3X HOP3 NDP sing 342 n n # _atom_sites.entry_id 4XRX _atom_sites.fract_transf_matrix[1][1] 0.012135 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012135 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003286 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 501 501 NDP NDP . D 3 42V A 1 502 1 42V UNK . E 2 NDP B 1 501 502 NDP NDP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . E 2 23.33 3.508 15.645 1 28.77 ? PA NDP 501 B 1 HETATM 2 O O1A NDP . . . E 2 24.073 2.249 15.277 1 28.45 ? O1A NDP 501 B 1 HETATM 3 O O2A NDP . . . E 2 23.251 3.976 17.068 1 29.46 ? O2A NDP 501 B 1 HETATM 4 O O5B NDP . . . E 2 21.84 3.458 15.066 1 30.61 ? O5B NDP 501 B 1 HETATM 5 C C5B NDP . . . E 2 21.587 4.312 13.944 1 30.78 ? C5B NDP 501 B 1 HETATM 6 C C4B NDP . . . E 2 20.304 3.945 13.23 1 30.87 ? C4B NDP 501 B 1 HETATM 7 O O4B NDP . . . E 2 20.163 2.528 13.102 1 31.13 ? O4B NDP 501 B 1 HETATM 8 C C3B NDP . . . E 2 19.107 4.376 14.058 1 31.83 ? C3B NDP 501 B 1 HETATM 9 O O3B NDP . . . E 2 18.761 5.754 13.854 1 34.77 ? O3B NDP 501 B 1 HETATM 10 C C2B NDP . . . E 2 18.021 3.417 13.639 1 30.62 ? C2B NDP 501 B 1 HETATM 11 O O2B NDP . . . E 2 17.573 3.751 12.329 1 31.39 ? O2B NDP 501 B 1 HETATM 12 C C1B NDP . . . E 2 18.834 2.147 13.528 1 30.2 ? C1B NDP 501 B 1 HETATM 13 N N9A NDP . . . E 2 18.872 1.351 14.805 1 29.3 ? N9A NDP 501 B 1 HETATM 14 C C8A NDP . . . E 2 19.996 0.887 15.415 1 28.49 ? C8A NDP 501 B 1 HETATM 15 N N7A NDP . . . E 2 19.71 0.177 16.537 1 26.77 ? N7A NDP 501 B 1 HETATM 16 C C5A NDP . . . E 2 18.375 0.16 16.65 1 27.41 ? C5A NDP 501 B 1 HETATM 17 C C6A NDP . . . E 2 17.41 -0.418 17.601 1 28.04 ? C6A NDP 501 B 1 HETATM 18 N N6A NDP . . . E 2 17.868 -1.116 18.661 1 29.42 ? N6A NDP 501 B 1 HETATM 19 N N1A NDP . . . E 2 16.087 -0.217 17.388 1 27.75 ? N1A NDP 501 B 1 HETATM 20 C C2A NDP . . . E 2 15.636 0.498 16.338 1 27.77 ? C2A NDP 501 B 1 HETATM 21 N N3A NDP . . . E 2 16.459 1.059 15.43 1 28.13 ? N3A NDP 501 B 1 HETATM 22 C C4A NDP . . . E 2 17.815 0.929 15.523 1 28.16 ? C4A NDP 501 B 1 HETATM 23 O O3 NDP . . . E 2 23.784 4.685 14.664 1 28.9 ? O3 NDP 501 B 1 HETATM 24 P PN NDP . . . E 2 24.948 5.726 14.959 1 30.46 ? PN NDP 501 B 1 HETATM 25 O O1N NDP . . . E 2 26.259 5.178 14.407 1 30.39 ? O1N NDP 501 B 1 HETATM 26 O O2N NDP . . . E 2 24.427 7.059 14.468 1 32.18 ? O2N NDP 501 B 1 HETATM 27 O O5D NDP . . . E 2 25.032 5.759 16.567 1 29.16 ? O5D NDP 501 B 1 HETATM 28 C C5D NDP . . . E 2 25.471 6.934 17.246 1 27.41 ? C5D NDP 501 B 1 HETATM 29 C C4D NDP . . . E 2 26.421 6.569 18.375 1 26 ? C4D NDP 501 B 1 HETATM 30 O O4D NDP . . . E 2 26.504 5.154 18.556 1 25.45 ? O4D NDP 501 B 1 HETATM 31 C C3D NDP . . . E 2 27.83 7.031 18.078 1 25.69 ? C3D NDP 501 B 1 HETATM 32 O O3D NDP . . . E 2 28.209 8.055 19.024 1 25.77 ? O3D NDP 501 B 1 HETATM 33 C C2D NDP . . . E 2 28.673 5.767 18.154 1 24.85 ? C2D NDP 501 B 1 HETATM 34 O O2D NDP . . . E 2 29.946 6.067 18.735 1 24.84 ? O2D NDP 501 B 1 HETATM 35 C C1D NDP . . . E 2 27.814 4.82 18.987 1 24.46 ? C1D NDP 501 B 1 HETATM 36 N N1N NDP . . . E 2 27.999 3.37 18.82 1 23.75 ? N1N NDP 501 B 1 HETATM 37 C C2N NDP . . . E 2 28.391 2.63 19.871 1 24.03 ? C2N NDP 501 B 1 HETATM 38 C C3N NDP . . . E 2 28.578 1.243 19.829 1 24.23 ? C3N NDP 501 B 1 HETATM 39 C C7N NDP . . . E 2 29.058 0.489 21.053 1 24.84 ? C7N NDP 501 B 1 HETATM 40 O O7N NDP . . . E 2 29.043 -0.739 21.093 1 24.62 ? O7N NDP 501 B 1 HETATM 41 N N7N NDP . . . E 2 29.55 1.184 22.083 1 25.06 ? N7N NDP 501 B 1 HETATM 42 C C4N NDP . . . E 2 28.327 0.491 18.544 1 24.01 ? C4N NDP 501 B 1 HETATM 43 C C5N NDP . . . E 2 27.903 1.401 17.486 1 24.27 ? C5N NDP 501 B 1 HETATM 44 C C6N NDP . . . E 2 27.748 2.781 17.654 1 23.7 ? C6N NDP 501 B 1 HETATM 45 P P2B NDP . . . E 2 16.482 4.898 11.981 1 33.69 ? P2B NDP 501 B 1 HETATM 46 O O1X NDP . . . E 2 16.03 4.508 10.597 1 33.05 ? O1X NDP 501 B 1 HETATM 47 O O2X NDP . . . E 2 15.467 4.718 13.097 1 33.15 ? O2X NDP 501 B 1 HETATM 48 O O3X NDP . . . E 2 17.173 6.246 11.946 1 33.14 ? O3X NDP 501 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 48 #