data_4XS0
#
_model_server_result.job_id            46xFUGeQ3NVSpo9OKpSwmQ 
_model_server_result.datetime_utc      '2025-03-09 02:33:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4xs0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":201}' 
#
_entry.id    4XS0 
#
_exptl.entry_id    4XS0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4XS0 
_cell.length_a            92.219 
_cell.length_b            92.219 
_cell.length_c            365.116 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4XS0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 D FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? 
metalc ? metalc2 D FE HEM . A HEM 201 1_555 J O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? 
metalc ? metalc3 B NE2 HIS 92 B HIS 92 1_555 E FE HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? 
metalc ? metalc4 E FE HEM . B HEM 201 1_555 K O HOH . B HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     4XS0 
_atom_sites.fract_transf_matrix[1][1]    0.010844 
_atom_sites.fract_transf_matrix[1][2]    0.006261 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012521 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002739 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 HEM A 1 201 142 HEM HEM . 
E 4 HEM B 1 201 147 HEM HEM . 
F 5 CL B 1 202 1 CL CL . 
G 5 CL C 1 701 1 CL CL . 
H 5 CL C 1 702 1 CL CL . 
I 6 SO4 C 1 703 1 SO4 SO4 . 
J 7 HOH A 1 301 2 HOH HOH . 
K 7 HOH B 1 301 4 HOH HOH . 
K 7 HOH B 2 302 1 HOH HOH . 
K 7 HOH B 3 303 3 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . D 4 22.371 -39.472 -10.712 1 45.82 ? CHA HEM 201 A 1 
HETATM 2 C CHB HEM . . . D 4 21.974 -35.501 -13.456 1 46.6 ? CHB HEM 201 A 1 
HETATM 3 C CHC HEM . . . D 4 19.156 -37.946 -16.555 1 43.04 ? CHC HEM 201 A 1 
HETATM 4 C CHD HEM . . . D 4 19.512 -41.933 -13.822 1 43.5 ? CHD HEM 201 A 1 
HETATM 5 C C1A HEM . . . D 4 22.513 -38.188 -11.176 1 45.92 ? C1A HEM 201 A 1 
HETATM 6 C C2A HEM . . . D 4 23.274 -37.133 -10.536 1 47.6 ? C2A HEM 201 A 1 
HETATM 7 C C3A HEM . . . D 4 23.158 -36.035 -11.293 1 46.99 ? C3A HEM 201 A 1 
HETATM 8 C C4A HEM . . . D 4 22.327 -36.357 -12.435 1 46.64 ? C4A HEM 201 A 1 
HETATM 9 C CMA HEM . . . D 4 23.803 -34.66 -11.018 1 47.14 ? CMA HEM 201 A 1 
HETATM 10 C CAA HEM . . . D 4 24.072 -37.263 -9.213 1 48.96 ? CAA HEM 201 A 1 
HETATM 11 C CBA HEM . . . D 4 25.583 -37.269 -9.471 1 50.73 ? CBA HEM 201 A 1 
HETATM 12 C CGA HEM . . . D 4 26.055 -38.493 -10.229 1 52.83 ? CGA HEM 201 A 1 
HETATM 13 O O1A HEM . . . D 4 27.082 -38.376 -10.949 1 55.04 ? O1A HEM 201 A 1 
HETATM 14 O O2A HEM . . . D 4 25.438 -39.586 -10.128 1 53.42 ? O2A HEM 201 A 1 
HETATM 15 C C1B HEM . . . D 4 21.179 -35.811 -14.54 1 45.28 ? C1B HEM 201 A 1 
HETATM 16 C C2B HEM . . . D 4 20.814 -34.914 -15.619 1 44.71 ? C2B HEM 201 A 1 
HETATM 17 C C3B HEM . . . D 4 20.037 -35.585 -16.471 1 44.57 ? C3B HEM 201 A 1 
HETATM 18 C C4B HEM . . . D 4 19.886 -36.937 -15.968 1 44.02 ? C4B HEM 201 A 1 
HETATM 19 C CMB HEM . . . D 4 21.25 -33.437 -15.747 1 45.25 ? CMB HEM 201 A 1 
HETATM 20 C CAB HEM . . . D 4 19.418 -35.026 -17.773 1 45.25 ? CAB HEM 201 A 1 
HETATM 21 C CBB HEM . . . D 4 18.517 -34.039 -17.732 1 45.91 ? CBB HEM 201 A 1 
HETATM 22 C C1C HEM . . . D 4 19.004 -39.23 -16.083 1 42.45 ? C1C HEM 201 A 1 
HETATM 23 C C2C HEM . . . D 4 18.219 -40.28 -16.703 1 42.28 ? C2C HEM 201 A 1 
HETATM 24 C C3C HEM . . . D 4 18.319 -41.374 -15.948 1 42.06 ? C3C HEM 201 A 1 
HETATM 25 C C4C HEM . . . D 4 19.169 -41.061 -14.823 1 43.1 ? C4C HEM 201 A 1 
HETATM 26 C CMC HEM . . . D 4 17.411 -40.152 -18.013 1 42.39 ? CMC HEM 201 A 1 
HETATM 27 C CAC HEM . . . D 4 17.658 -42.742 -16.208 1 41.54 ? CAC HEM 201 A 1 
HETATM 28 C CBC HEM . . . D 4 16.33 -42.818 -16.317 1 41.63 ? CBC HEM 201 A 1 
HETATM 29 C C1D HEM . . . D 4 20.31 -41.65 -12.744 1 44.54 ? C1D HEM 201 A 1 
HETATM 30 C C2D HEM . . . D 4 20.654 -42.594 -11.705 1 44.7 ? C2D HEM 201 A 1 
HETATM 31 C C3D HEM . . . D 4 21.547 -41.818 -10.742 1 45.66 ? C3D HEM 201 A 1 
HETATM 32 C C4D HEM . . . D 4 21.651 -40.489 -11.293 1 45.24 ? C4D HEM 201 A 1 
HETATM 33 C CMD HEM . . . D 4 20.22 -44.068 -11.578 1 44.38 ? CMD HEM 201 A 1 
HETATM 34 C CAD HEM . . . D 4 22.183 -42.356 -9.446 1 46.88 ? CAD HEM 201 A 1 
HETATM 35 C CBD HEM . . . D 4 21.177 -42.153 -8.317 1 47.37 ? CBD HEM 201 A 1 
HETATM 36 C CGD HEM . . . D 4 21.642 -42.874 -7.083 1 48.45 ? CGD HEM 201 A 1 
HETATM 37 O O1D HEM . . . D 4 21.907 -42.193 -6.062 1 49.15 ? O1D HEM 201 A 1 
HETATM 38 O O2D HEM . . . D 4 21.74 -44.127 -7.12 1 49.07 ? O2D HEM 201 A 1 
HETATM 39 N NA HEM . . . D 4 21.943 -37.679 -12.323 1 46.3 ? NA HEM 201 A 1 
HETATM 40 N NB HEM . . . D 4 20.598 -37.037 -14.79 1 44.62 ? NB HEM 201 A 1 
HETATM 41 N NC HEM . . . D 4 19.567 -39.745 -14.933 1 43.28 ? NC HEM 201 A 1 
HETATM 42 N ND HEM . . . D 4 20.912 -40.428 -12.47 1 44.95 ? ND HEM 201 A 1 
HETATM 43 FE FE HEM . . . D 4 20.748 -38.73 -13.645 1 44.77 ? FE HEM 201 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           43 
#