data_4XS2 # _model_server_result.job_id 75FOJEAUCO3SC-Bt80ZUXA _model_server_result.datetime_utc '2024-11-29 15:55:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xs2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 4XS2 # _exptl.entry_id 4XS2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 479.98 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1R,2S,3R,5R)-3-({5-(1,3-benzothiazol-2-yl)-6-chloro-2-[(3-methoxypropyl)amino]pyrimidin-4-yl}amino)-5-(hydroxymethyl)cyclopentane-1,2-diol _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 125.47 _cell.angle_gamma 90 _cell.entry_id 4XS2 _cell.length_a 143.97 _cell.length_b 139.99 _cell.length_c 87.62 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XS2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I 1 1 B,F,J 2 1 C,G,K 3 1 D,H,L 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TPO 183 A TPO 342 1_555 A N VAL 184 A VAL 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale2 A C MET 185 A MET 344 1_555 A N TPO 186 A TPO 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale3 A C TPO 186 A TPO 345 1_555 A N SEP 187 A SEP 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale4 A C SEP 187 A SEP 346 1_555 A N ARG 188 A ARG 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? covale ? covale5 B C TPO 183 B TPO 342 1_555 B N VAL 184 B VAL 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale6 B C MET 185 B MET 344 1_555 B N TPO 186 B TPO 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale7 B C TPO 186 B TPO 345 1_555 B N SEP 187 B SEP 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale8 B C SEP 187 B SEP 346 1_555 B N ARG 188 B ARG 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? covale ? covale9 C C TPO 183 C TPO 342 1_555 C N VAL 184 C VAL 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale10 C C MET 185 C MET 344 1_555 C N TPO 186 C TPO 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale11 C C TPO 186 C TPO 345 1_555 C N SEP 187 C SEP 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale12 C C SEP 187 C SEP 346 1_555 C N ARG 188 C ARG 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.36 ? covale ? covale13 D C TPO 183 D TPO 342 1_555 D N VAL 184 D VAL 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale14 D C MET 185 D MET 344 1_555 D N TPO 186 D TPO 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale15 D C TPO 186 D TPO 345 1_555 D N SEP 187 D SEP 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale16 D C SEP 187 D SEP 346 1_555 D N ARG 188 D ARG 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.36 ? # _chem_comp.formula 'C21 H26 Cl N5 O4 S' _chem_comp.formula_weight 479.98 _chem_comp.id 42P _chem_comp.mon_nstd_flag . _chem_comp.name (1R,2S,3R,5R)-3-({5-(1,3-benzothiazol-2-yl)-6-chloro-2-[(3-methoxypropyl)amino]pyrimidin-4-yl}amino)-5-(hydroxymethyl)cyclopentane-1,2-diol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C30 C31 42P doub 1 n y C30 C29 42P sing 2 n y C31 C32 42P sing 3 n y C29 C26 42P doub 4 n y C32 C27 42P doub 5 n y C26 C27 42P sing 6 n y C26 S25 42P sing 7 n y C27 N28 42P sing 8 n y S25 C10 42P sing 9 n y N28 C10 42P doub 10 n y C10 C06 42P sing 11 n n CL9 C05 42P sing 12 n n C06 C05 42P doub 13 n y C06 C01 42P sing 14 n y C05 N04 42P sing 15 n y N07 C01 42P sing 16 n n N07 C11 42P sing 17 n n C18 O19 42P sing 18 n n C18 C14 42P sing 19 n n C01 N02 42P doub 20 n y C15 C11 42P sing 21 n n C15 C14 42P sing 22 n n N04 C03 42P doub 23 n y C11 C12 42P sing 24 n n C14 C13 42P sing 25 n n N02 C03 42P sing 26 n y C03 N08 42P sing 27 n n C13 C12 42P sing 28 n n C13 O17 42P sing 29 n n C12 O16 42P sing 30 n n N08 C20 42P sing 31 n n C20 C21 42P sing 32 n n C21 C22 42P sing 33 n n C22 O23 42P sing 34 n n O23 C24 42P sing 35 n n N07 H1 42P sing 36 n n N08 H2 42P sing 37 n n C11 H3 42P sing 38 n n C12 H4 42P sing 39 n n C13 H5 42P sing 40 n n C14 H6 42P sing 41 n n C15 H7 42P sing 42 n n C15 H8 42P sing 43 n n O16 H9 42P sing 44 n n O17 H10 42P sing 45 n n C18 H11 42P sing 46 n n C18 H12 42P sing 47 n n O19 H13 42P sing 48 n n C20 H14 42P sing 49 n n C20 H15 42P sing 50 n n C21 H16 42P sing 51 n n C21 H17 42P sing 52 n n C22 H18 42P sing 53 n n C22 H19 42P sing 54 n n C24 H20 42P sing 55 n n C24 H21 42P sing 56 n n C24 H22 42P sing 57 n n C29 H23 42P sing 58 n n C30 H24 42P sing 59 n n C31 H25 42P sing 60 n n C32 H26 42P sing 61 n n # _atom_sites.entry_id 4XS2 _atom_sites.fract_transf_matrix[1][1] 0.006946 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004949 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007143 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014014 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 42P A 1 501 1 42P SCH . F 2 42P B 1 501 2 42P SCH . G 2 42P C 1 501 3 42P SCH . H 2 42P D 1 501 4 42P SCH . I 3 HOH A 1 601 5 HOH WAT . I 3 HOH A 2 602 7 HOH WAT . I 3 HOH A 3 603 10 HOH WAT . I 3 HOH A 4 604 18 HOH WAT . I 3 HOH A 5 605 19 HOH WAT . I 3 HOH A 6 606 25 HOH WAT . J 3 HOH B 1 601 2 HOH WAT . J 3 HOH B 2 602 6 HOH WAT . J 3 HOH B 3 603 11 HOH WAT . J 3 HOH B 4 604 12 HOH WAT . J 3 HOH B 5 605 24 HOH WAT . J 3 HOH B 6 606 28 HOH WAT . J 3 HOH B 7 607 29 HOH WAT . K 3 HOH C 1 601 1 HOH WAT . K 3 HOH C 2 602 3 HOH WAT . K 3 HOH C 3 603 14 HOH WAT . K 3 HOH C 4 604 15 HOH WAT . K 3 HOH C 5 605 17 HOH WAT . K 3 HOH C 6 606 23 HOH WAT . K 3 HOH C 7 607 27 HOH WAT . K 3 HOH C 8 608 30 HOH WAT . K 3 HOH C 9 609 31 HOH WAT . L 3 HOH D 1 601 4 HOH WAT . L 3 HOH D 2 602 8 HOH WAT . L 3 HOH D 3 603 9 HOH WAT . L 3 HOH D 4 604 13 HOH WAT . L 3 HOH D 5 605 16 HOH WAT . L 3 HOH D 6 606 20 HOH WAT . L 3 HOH D 7 607 21 HOH WAT . L 3 HOH D 8 608 22 HOH WAT . L 3 HOH D 9 609 26 HOH WAT . L 3 HOH D 10 610 32 HOH WAT . L 3 HOH D 11 611 33 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 42P . . . E 2 29.915 8.89 -7.988 1 98.2 ? C01 42P 501 A 1 HETATM 2 N N02 42P . . . E 2 29.405 8.181 -6.906 1 98.75 ? N02 42P 501 A 1 HETATM 3 C C03 42P . . . E 2 29.731 6.892 -6.777 1 98.88 ? C03 42P 501 A 1 HETATM 4 N N04 42P . . . E 2 30.502 6.193 -7.61 1 98.59 ? N04 42P 501 A 1 HETATM 5 C C05 42P . . . E 2 31.037 6.828 -8.704 1 98.28 ? C05 42P 501 A 1 HETATM 6 C C06 42P . . . E 2 30.767 8.249 -9.02 1 98.19 ? C06 42P 501 A 1 HETATM 7 N N07 42P . . . E 2 29.539 10.212 -8.023 1 96.92 ? N07 42P 501 A 1 HETATM 8 N N08 42P . . . E 2 29.231 6.208 -5.699 1 99.12 ? N08 42P 501 A 1 HETATM 9 CL CL9 42P . . . E 2 31.967 5.663 -9.607 1 97.92 ? CL9 42P 501 A 1 HETATM 10 C C10 42P . . . E 2 31.358 9.04 -10.186 1 97.38 ? C10 42P 501 A 1 HETATM 11 C C11 42P . . . E 2 28.635 11.054 -7.215 1 96.98 ? C11 42P 501 A 1 HETATM 12 C C12 42P . . . E 2 28.914 11.061 -5.689 1 97.13 ? C12 42P 501 A 1 HETATM 13 C C13 42P . . . E 2 29.756 12.339 -5.398 1 96.34 ? C13 42P 501 A 1 HETATM 14 C C14 42P . . . E 2 29.443 13.324 -6.57 1 96.56 ? C14 42P 501 A 1 HETATM 15 C C15 42P . . . E 2 28.602 12.543 -7.619 1 96.71 ? C15 42P 501 A 1 HETATM 16 O O16 42P . . . E 2 27.702 11.041 -4.949 1 97.1 ? O16 42P 501 A 1 HETATM 17 O O17 42P . . . E 2 29.467 12.887 -4.094 1 95.06 ? O17 42P 501 A 1 HETATM 18 C C18 42P . . . E 2 30.663 14.07 -7.173 1 95.53 ? C18 42P 501 A 1 HETATM 19 O O19 42P . . . E 2 30.554 15.485 -7.063 1 94.85 ? O19 42P 501 A 1 HETATM 20 C C20 42P . . . E 2 28.102 6.504 -4.846 1 99.37 ? C20 42P 501 A 1 HETATM 21 C C21 42P . . . E 2 28.143 5.581 -3.626 1 100.33 ? C21 42P 501 A 1 HETATM 22 C C22 42P . . . E 2 26.907 5.794 -2.743 1 101.71 ? C22 42P 501 A 1 HETATM 23 O O23 42P . . . E 2 26.535 4.553 -2.156 1 102.76 ? O23 42P 501 A 1 HETATM 24 C C24 42P . . . E 2 25.155 4.245 -2.345 1 102.69 ? C24 42P 501 A 1 HETATM 25 S S25 42P . . . E 2 32.608 8.446 -11.305 1 95.79 ? S25 42P 501 A 1 HETATM 26 C C26 42P . . . E 2 32.737 9.993 -12.126 1 97.59 ? C26 42P 501 A 1 HETATM 27 C C27 42P . . . E 2 31.827 10.902 -11.497 1 99.02 ? C27 42P 501 A 1 HETATM 28 N N28 42P . . . E 2 31.117 10.352 -10.41 1 98.79 ? N28 42P 501 A 1 HETATM 29 C C29 42P . . . E 2 33.549 10.402 -13.234 1 98.14 ? C29 42P 501 A 1 HETATM 30 C C30 42P . . . E 2 33.449 11.743 -13.732 1 98.1 ? C30 42P 501 A 1 HETATM 31 C C31 42P . . . E 2 32.554 12.673 -13.13 1 98 ? C31 42P 501 A 1 HETATM 32 C C32 42P . . . E 2 31.753 12.255 -12.019 1 98.9 ? C32 42P 501 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #