data_4XS3
#
_model_server_result.job_id            Z03vUhniQCaHlIu4MBZI8g 
_model_server_result.datetime_utc      '2025-03-05 18:44:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4xs3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":502}' 
#
_entry.id    4XS3 
#
_exptl.entry_id    4XS3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4XS3 
_cell.length_a            82.586 
_cell.length_b            82.586 
_cell.length_c            306.599 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4XS3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 275 n n 
PA O2A NAP sing 276 n n 
PA O5B NAP sing 277 n n 
PA O3 NAP sing 278 n n 
O2A HOA2 NAP sing 279 n n 
O5B C5B NAP sing 280 n n 
C5B C4B NAP sing 281 n n 
C5B H51A NAP sing 282 n n 
C5B H52A NAP sing 283 n n 
C4B O4B NAP sing 284 n n 
C4B C3B NAP sing 285 n n 
C4B H4B NAP sing 286 n n 
O4B C1B NAP sing 287 n n 
C3B O3B NAP sing 288 n n 
C3B C2B NAP sing 289 n n 
C3B H3B NAP sing 290 n n 
O3B HO3A NAP sing 291 n n 
C2B O2B NAP sing 292 n n 
C2B C1B NAP sing 293 n n 
C2B H2B NAP sing 294 n n 
O2B P2B NAP sing 295 n n 
C1B N9A NAP sing 296 n n 
C1B H1B NAP sing 297 n n 
N9A C8A NAP sing 298 n y 
N9A C4A NAP sing 299 n y 
C8A N7A NAP doub 300 n y 
C8A H8A NAP sing 301 n n 
N7A C5A NAP sing 302 n y 
C5A C6A NAP sing 303 n y 
C5A C4A NAP doub 304 n y 
C6A N6A NAP sing 305 n n 
C6A N1A NAP doub 306 n y 
N6A H61A NAP sing 307 n n 
N6A H62A NAP sing 308 n n 
N1A C2A NAP sing 309 n y 
C2A N3A NAP doub 310 n y 
C2A H2A NAP sing 311 n n 
N3A C4A NAP sing 312 n y 
O3 PN NAP sing 313 n n 
PN O1N NAP doub 314 n n 
PN O2N NAP sing 315 n n 
PN O5D NAP sing 316 n n 
O5D C5D NAP sing 317 n n 
C5D C4D NAP sing 318 n n 
C5D H51N NAP sing 319 n n 
C5D H52N NAP sing 320 n n 
C4D O4D NAP sing 321 n n 
C4D C3D NAP sing 322 n n 
C4D H4D NAP sing 323 n n 
O4D C1D NAP sing 324 n n 
C3D O3D NAP sing 325 n n 
C3D C2D NAP sing 326 n n 
C3D H3D NAP sing 327 n n 
O3D HO3N NAP sing 328 n n 
C2D O2D NAP sing 329 n n 
C2D C1D NAP sing 330 n n 
C2D H2D NAP sing 331 n n 
O2D HO2N NAP sing 332 n n 
C1D N1N NAP sing 333 n n 
C1D H1D NAP sing 334 n n 
N1N C2N NAP sing 335 n y 
N1N C6N NAP doub 336 n y 
C2N C3N NAP doub 337 n y 
C2N H2N NAP sing 338 n n 
C3N C7N NAP sing 339 n n 
C3N C4N NAP sing 340 n y 
C7N O7N NAP doub 341 n n 
C7N N7N NAP sing 342 n n 
N7N H71N NAP sing 343 n n 
N7N H72N NAP sing 344 n n 
C4N C5N NAP doub 345 n y 
C4N H4N NAP sing 346 n n 
C5N C6N NAP sing 347 n y 
C5N H5N NAP sing 348 n n 
C6N H6N NAP sing 349 n n 
P2B O1X NAP doub 350 n n 
P2B O2X NAP sing 351 n n 
P2B O3X NAP sing 352 n n 
O2X HOP2 NAP sing 353 n n 
O3X HOP3 NAP sing 354 n n 
#
_atom_sites.entry_id                     4XS3 
_atom_sites.fract_transf_matrix[1][1]    0.012109 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012109 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003262 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 42W A 1 501 502 42W 42W . 
D 3 NAP A 1 502 2 NAP NDP . 
E 2 42W B 1 501 502 42W 42W . 
F 3 NAP B 1 502 1 NAP NDP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . D 3 12.11 -25.082 -14.566 1 55.61 ? PA NAP 502 A 1 
HETATM 2 O O1A NAP . . . D 3 11.434 -25.715 -13.388 1 55.39 ? O1A NAP 502 A 1 
HETATM 3 O O2A NAP . . . D 3 12.609 -26.155 -15.499 1 65.55 ? O2A NAP 502 A 1 
HETATM 4 O O5B NAP . . . D 3 13.306 -24.222 -14.076 1 60.86 ? O5B NAP 502 A 1 
HETATM 5 C C5B NAP . . . D 3 14.168 -24.71 -13.117 1 68.14 ? C5B NAP 502 A 1 
HETATM 6 C C4B NAP . . . D 3 15.242 -23.675 -12.936 1 60.93 ? C4B NAP 502 A 1 
HETATM 7 O O4B NAP . . . D 3 14.945 -22.841 -11.85 1 80.51 ? O4B NAP 502 A 1 
HETATM 8 C C3B NAP . . . D 3 16.616 -24.225 -12.696 1 58.4 ? C3B NAP 502 A 1 
HETATM 9 O O3B NAP . . . D 3 17.149 -24.708 -13.866 1 49.22 ? O3B NAP 502 A 1 
HETATM 10 C C2B NAP . . . D 3 17.342 -23.042 -12.201 1 78.17 ? C2B NAP 502 A 1 
HETATM 11 O O2B NAP . . . D 3 17.98 -22.334 -13.181 1 78.33 ? O2B NAP 502 A 1 
HETATM 12 C C1B NAP . . . D 3 16.219 -22.161 -11.568 1 96.37 ? C1B NAP 502 A 1 
HETATM 13 N N9A NAP . . . D 3 16.413 -21.561 -10.152 1 113.65 ? N9A NAP 502 A 1 
HETATM 14 C C8A NAP . . . D 3 16.662 -20.269 -9.877 1 104.72 ? C8A NAP 502 A 1 
HETATM 15 N N7A NAP . . . D 3 16.772 -20.097 -8.586 1 120.89 ? N7A NAP 502 A 1 
HETATM 16 C C5A NAP . . . D 3 16.6 -21.266 -7.966 1 129.62 ? C5A NAP 502 A 1 
HETATM 17 C C6A NAP . . . D 3 16.609 -21.666 -6.638 1 130.55 ? C6A NAP 502 A 1 
HETATM 18 N N6A NAP . . . D 3 16.843 -20.722 -5.612 1 122.92 ? N6A NAP 502 A 1 
HETATM 19 N N1A NAP . . . D 3 16.396 -22.949 -6.325 1 126.24 ? N1A NAP 502 A 1 
HETATM 20 C C2A NAP . . . D 3 16.173 -23.866 -7.277 1 123.81 ? C2A NAP 502 A 1 
HETATM 21 N N3A NAP . . . D 3 16.159 -23.507 -8.579 1 117.28 ? N3A NAP 502 A 1 
HETATM 22 C C4A NAP . . . D 3 16.367 -22.228 -8.953 1 120.06 ? C4A NAP 502 A 1 
HETATM 23 O O3 NAP . . . D 3 11.123 -24.147 -15.322 1 70.01 ? O3 NAP 502 A 1 
HETATM 24 P PN NAP . . . D 3 10.862 -22.702 -14.822 1 61.18 ? PN NAP 502 A 1 
HETATM 25 O O1N NAP . . . D 3 10.481 -22.75 -13.359 1 43.07 ? O1N NAP 502 A 1 
HETATM 26 O O2N NAP . . . D 3 12.107 -21.866 -15.01 1 54.88 ? O2N NAP 502 A 1 
HETATM 27 O O5D NAP . . . D 3 9.661 -22.05 -15.661 1 67.06 ? O5D NAP 502 A 1 
HETATM 28 C C5D NAP . . . D 3 9.777 -21.877 -17.068 1 63.93 ? C5D NAP 502 A 1 
HETATM 29 C C4D NAP . . . D 3 8.539 -22.425 -17.773 1 59.8 ? C4D NAP 502 A 1 
HETATM 30 O O4D NAP . . . D 3 8.619 -23.832 -17.882 1 62.18 ? O4D NAP 502 A 1 
HETATM 31 C C3D NAP . . . D 3 7.273 -22.089 -17.102 1 55.06 ? C3D NAP 502 A 1 
HETATM 32 O O3D NAP . . . D 3 6.476 -21.277 -17.906 1 56.07 ? O3D NAP 502 A 1 
HETATM 33 C C2D NAP . . . D 3 6.633 -23.402 -16.863 1 58.14 ? C2D NAP 502 A 1 
HETATM 34 O O2D NAP . . . D 3 5.284 -23.331 -17.074 1 59.13 ? O2D NAP 502 A 1 
HETATM 35 C C1D NAP . . . D 3 7.299 -24.261 -17.867 1 65.31 ? C1D NAP 502 A 1 
HETATM 36 N N1N NAP . . . D 3 7.163 -25.694 -17.591 1 69.74 ? N1N NAP 502 A 1 
HETATM 37 C C2N NAP . . . D 3 7.505 -26.034 -16.27 1 65.11 ? C2N NAP 502 A 1 
HETATM 38 C C3N NAP . . . D 3 7.149 -27.256 -15.739 1 79.26 ? C3N NAP 502 A 1 
HETATM 39 C C7N NAP . . . D 3 7.529 -27.587 -14.316 1 88.37 ? C7N NAP 502 A 1 
HETATM 40 O O7N NAP . . . D 3 8.669 -27.927 -14.063 1 90.85 ? O7N NAP 502 A 1 
HETATM 41 N N7N NAP . . . D 3 6.574 -27.523 -13.222 1 81.37 ? N7N NAP 502 A 1 
HETATM 42 C C4N NAP . . . D 3 6.384 -28.25 -16.565 1 72.72 ? C4N NAP 502 A 1 
HETATM 43 C C5N NAP . . . D 3 6.36 -27.929 -18.034 1 55.07 ? C5N NAP 502 A 1 
HETATM 44 C C6N NAP . . . D 3 6.742 -26.696 -18.485 1 64.86 ? C6N NAP 502 A 1 
HETATM 45 P P2B NAP . . . D 3 19.312 -21.591 -12.882 1 76.17 ? P2B NAP 502 A 1 
HETATM 46 O O1X NAP . . . D 3 20.47 -22.498 -13.158 1 67.03 ? O1X NAP 502 A 1 
HETATM 47 O O2X NAP . . . D 3 19.342 -21.171 -11.438 1 75.82 ? O2X NAP 502 A 1 
HETATM 48 O O3X NAP . . . D 3 19.406 -20.361 -13.753 1 65.98 ? O3X NAP 502 A 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           505 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           48 
#