data_4XSH # _model_server_result.job_id MDgktEPwoEYGHRwoxfjUuw _model_server_result.datetime_utc '2024-11-28 09:13:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xsh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":302}' # _entry.id 4XSH # _exptl.entry_id 4XSH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4XSH _cell.length_a 50.424 _cell.length_b 50.424 _cell.length_c 136.667 _cell.Z_PDB 3 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XSH _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N ? 6 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 19 A THR 19 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc2 A O THR 37 A THR 37 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc3 C O2G GSP . A GSP 201 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.925 ? metalc ? metalc4 C O1B GSP . A GSP 201 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc5 D MG MG . A MG 202 1_555 I O HOH . A HOH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.849 ? metalc ? metalc6 D MG MG . A MG 202 1_555 I O HOH . A HOH 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 4XSH _atom_sites.fract_transf_matrix[1][1] 0.019832 _atom_sites.fract_transf_matrix[1][2] 0.01145 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0229 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007317 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GSP A 1 201 538 GSP GSP . D 4 MG A 1 202 1 MG MG . E 5 NAI B 1 301 1 NAI NAI . F 6 EDO B 1 302 1 EDO EDO . G 6 EDO B 1 303 3 EDO EDO . H 6 EDO B 1 304 4 EDO EDO . I 7 HOH A 1 301 443 HOH HOH . I 7 HOH A 2 302 158 HOH HOH . I 7 HOH A 3 303 428 HOH HOH . I 7 HOH A 4 304 271 HOH HOH . I 7 HOH A 5 305 402 HOH HOH . I 7 HOH A 6 306 509 HOH HOH . I 7 HOH A 7 307 343 HOH HOH . I 7 HOH A 8 308 239 HOH HOH . I 7 HOH A 9 309 382 HOH HOH . I 7 HOH A 10 310 406 HOH HOH . I 7 HOH A 11 311 358 HOH HOH . I 7 HOH A 12 312 383 HOH HOH . I 7 HOH A 13 313 512 HOH HOH . I 7 HOH A 14 314 344 HOH HOH . I 7 HOH A 15 315 511 HOH HOH . I 7 HOH A 16 316 384 HOH HOH . I 7 HOH A 17 317 345 HOH HOH . I 7 HOH A 18 318 348 HOH HOH . I 7 HOH A 19 319 362 HOH HOH . I 7 HOH A 20 320 424 HOH HOH . I 7 HOH A 21 321 347 HOH HOH . I 7 HOH A 22 322 223 HOH HOH . I 7 HOH A 23 323 507 HOH HOH . I 7 HOH A 24 324 131 HOH HOH . I 7 HOH A 25 325 134 HOH HOH . I 7 HOH A 26 326 510 HOH HOH . I 7 HOH A 27 327 371 HOH HOH . I 7 HOH A 28 328 373 HOH HOH . I 7 HOH A 29 329 421 HOH HOH . I 7 HOH A 30 330 354 HOH HOH . J 7 HOH B 1 401 489 HOH HOH . J 7 HOH B 2 402 506 HOH HOH . J 7 HOH B 3 403 473 HOH HOH . J 7 HOH B 4 404 518 HOH HOH . J 7 HOH B 5 405 516 HOH HOH . J 7 HOH B 6 406 393 HOH HOH . J 7 HOH B 7 407 514 HOH HOH . J 7 HOH B 8 408 515 HOH HOH . J 7 HOH B 9 409 504 HOH HOH . J 7 HOH B 10 410 503 HOH HOH . J 7 HOH B 11 411 419 HOH HOH . J 7 HOH B 12 412 319 HOH HOH . J 7 HOH B 13 413 100 HOH HOH . J 7 HOH B 14 414 357 HOH HOH . J 7 HOH B 15 415 427 HOH HOH . J 7 HOH B 16 416 492 HOH HOH . J 7 HOH B 17 417 189 HOH HOH . J 7 HOH B 18 418 487 HOH HOH . J 7 HOH B 19 419 162 HOH HOH . J 7 HOH B 20 420 372 HOH HOH . J 7 HOH B 21 421 505 HOH HOH . J 7 HOH B 22 422 185 HOH HOH . J 7 HOH B 23 423 513 HOH HOH . J 7 HOH B 24 424 456 HOH HOH . J 7 HOH B 25 425 508 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 6 -17.504 16.575 7.726 1 70.53 ? C1 EDO 302 B 1 HETATM 2 O O1 EDO . . . F 6 -18.286 16.486 8.936 1 76.02 ? O1 EDO 302 B 1 HETATM 3 C C2 EDO . . . F 6 -17.906 15.459 6.759 1 78.49 ? C2 EDO 302 B 1 HETATM 4 O O2 EDO . . . F 6 -17.906 15.842 5.374 1 75.19 ? O2 EDO 302 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #