data_4XSK # _model_server_result.job_id x385Uj_bPkEnoW4b85AKeQ _model_server_result.datetime_utc '2024-11-07 03:02:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4xsk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":306}' # _entry.id 4XSK # _exptl.entry_id 4XSK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4XSK _cell.length_a 121.025 _cell.length_b 121.025 _cell.length_c 42.774 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XSK _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 31 U CYS 42 1_555 A SG CYS 47 U CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? disulf ? disulf2 A SG CYS 39 U CYS 50 1_555 A SG CYS 110 U CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? disulf ? disulf3 A SG CYS 135 U CYS 136 1_555 A SG CYS 204 U CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 167 U CYS 168 1_555 A SG CYS 183 U CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf5 A SG CYS 194 U CYS 191 1_555 A SG CYS 222 U CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4XSK _atom_sites.fract_transf_matrix[1][1] 0.008263 _atom_sites.fract_transf_matrix[1][2] 0.004771 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009541 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023379 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 U 1 301 123 SO4 SO4 . C 2 SO4 U 1 302 124 SO4 SO4 . D 3 PGE U 1 303 125 PGE PG6 . E 3 PGE U 1 304 126 PGE PG6 . F 4 GOL U 1 305 127 GOL GOL . G 4 GOL U 1 306 128 GOL GOL . H 5 HOH U 1 401 100 HOH HOH . H 5 HOH U 2 402 51 HOH HOH . H 5 HOH U 3 403 62 HOH HOH . H 5 HOH U 4 404 60 HOH HOH . H 5 HOH U 5 405 108 HOH HOH . H 5 HOH U 6 406 54 HOH HOH . H 5 HOH U 7 407 80 HOH HOH . H 5 HOH U 8 408 87 HOH HOH . H 5 HOH U 9 409 41 HOH HOH . H 5 HOH U 10 410 57 HOH HOH . H 5 HOH U 11 411 56 HOH HOH . H 5 HOH U 12 412 73 HOH HOH . H 5 HOH U 13 413 71 HOH HOH . H 5 HOH U 14 414 49 HOH HOH . H 5 HOH U 15 415 81 HOH HOH . H 5 HOH U 16 416 15 HOH HOH . H 5 HOH U 17 417 52 HOH HOH . H 5 HOH U 18 418 22 HOH HOH . H 5 HOH U 19 419 93 HOH HOH . H 5 HOH U 20 420 10 HOH HOH . H 5 HOH U 21 421 25 HOH HOH . H 5 HOH U 22 422 28 HOH HOH . H 5 HOH U 23 423 13 HOH HOH . H 5 HOH U 24 424 12 HOH HOH . H 5 HOH U 25 425 14 HOH HOH . H 5 HOH U 26 426 65 HOH HOH . H 5 HOH U 27 427 106 HOH HOH . H 5 HOH U 28 428 26 HOH HOH . H 5 HOH U 29 429 101 HOH HOH . H 5 HOH U 30 430 102 HOH HOH . H 5 HOH U 31 431 33 HOH HOH . H 5 HOH U 32 432 37 HOH HOH . H 5 HOH U 33 433 3 HOH HOH . H 5 HOH U 34 434 4 HOH HOH . H 5 HOH U 35 435 55 HOH HOH . H 5 HOH U 36 436 82 HOH HOH . H 5 HOH U 37 437 42 HOH HOH . H 5 HOH U 38 438 69 HOH HOH . H 5 HOH U 39 439 43 HOH HOH . H 5 HOH U 40 440 77 HOH HOH . H 5 HOH U 41 441 5 HOH HOH . H 5 HOH U 42 442 18 HOH HOH . H 5 HOH U 43 443 21 HOH HOH . H 5 HOH U 44 444 2 HOH HOH . H 5 HOH U 45 445 92 HOH HOH . H 5 HOH U 46 446 88 HOH HOH . H 5 HOH U 47 447 44 HOH HOH . H 5 HOH U 48 448 113 HOH HOH . H 5 HOH U 49 449 9 HOH HOH . H 5 HOH U 50 450 1 HOH HOH . H 5 HOH U 51 451 40 HOH HOH . H 5 HOH U 52 452 48 HOH HOH . H 5 HOH U 53 453 74 HOH HOH . H 5 HOH U 54 454 39 HOH HOH . H 5 HOH U 55 455 19 HOH HOH . H 5 HOH U 56 456 58 HOH HOH . H 5 HOH U 57 457 91 HOH HOH . H 5 HOH U 58 458 53 HOH HOH . H 5 HOH U 59 459 23 HOH HOH . H 5 HOH U 60 460 78 HOH HOH . H 5 HOH U 61 461 38 HOH HOH . H 5 HOH U 62 462 29 HOH HOH . H 5 HOH U 63 463 31 HOH HOH . H 5 HOH U 64 464 27 HOH HOH . H 5 HOH U 65 465 11 HOH HOH . H 5 HOH U 66 466 45 HOH HOH . H 5 HOH U 67 467 66 HOH HOH . H 5 HOH U 68 468 24 HOH HOH . H 5 HOH U 69 469 59 HOH HOH . H 5 HOH U 70 470 16 HOH HOH . H 5 HOH U 71 471 114 HOH HOH . H 5 HOH U 72 472 118 HOH HOH . H 5 HOH U 73 473 89 HOH HOH . H 5 HOH U 74 474 110 HOH HOH . H 5 HOH U 75 475 8 HOH HOH . H 5 HOH U 76 476 117 HOH HOH . H 5 HOH U 77 477 85 HOH HOH . H 5 HOH U 78 478 34 HOH HOH . H 5 HOH U 79 479 94 HOH HOH . H 5 HOH U 80 480 95 HOH HOH . H 5 HOH U 81 481 96 HOH HOH . H 5 HOH U 82 482 20 HOH HOH . H 5 HOH U 83 483 86 HOH HOH . H 5 HOH U 84 484 116 HOH HOH . H 5 HOH U 85 485 46 HOH HOH . H 5 HOH U 86 486 30 HOH HOH . H 5 HOH U 87 487 32 HOH HOH . H 5 HOH U 88 488 99 HOH HOH . H 5 HOH U 89 489 6 HOH HOH . H 5 HOH U 90 490 68 HOH HOH . H 5 HOH U 91 491 36 HOH HOH . H 5 HOH U 92 492 121 HOH HOH . H 5 HOH U 93 493 70 HOH HOH . H 5 HOH U 94 494 83 HOH HOH . H 5 HOH U 95 495 105 HOH HOH . H 5 HOH U 96 496 67 HOH HOH . H 5 HOH U 97 497 64 HOH HOH . H 5 HOH U 98 498 90 HOH HOH . H 5 HOH U 99 499 17 HOH HOH . H 5 HOH U 100 500 107 HOH HOH . H 5 HOH U 101 501 75 HOH HOH . H 5 HOH U 102 502 111 HOH HOH . H 5 HOH U 103 503 98 HOH HOH . H 5 HOH U 104 504 63 HOH HOH . H 5 HOH U 105 505 97 HOH HOH . H 5 HOH U 106 506 109 HOH HOH . H 5 HOH U 107 507 76 HOH HOH . H 5 HOH U 108 508 104 HOH HOH . H 5 HOH U 109 509 47 HOH HOH . H 5 HOH U 110 510 35 HOH HOH . H 5 HOH U 111 511 61 HOH HOH . H 5 HOH U 112 512 50 HOH HOH . H 5 HOH U 113 513 120 HOH HOH . H 5 HOH U 114 514 72 HOH HOH . H 5 HOH U 115 515 115 HOH HOH . H 5 HOH U 116 516 79 HOH HOH . H 5 HOH U 117 517 103 HOH HOH . H 5 HOH U 118 518 112 HOH HOH . H 5 HOH U 119 519 84 HOH HOH . H 5 HOH U 120 520 122 HOH HOH . H 5 HOH U 121 521 119 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 4 -50.274 -18.306 -9.77 1 30.5 ? C1 GOL 306 U 1 HETATM 2 O O1 GOL . . . G 4 -50.54 -17.447 -8.655 1 22.49 ? O1 GOL 306 U 1 HETATM 3 C C2 GOL . . . G 4 -49.582 -17.582 -10.858 1 30.84 ? C2 GOL 306 U 1 HETATM 4 O O2 GOL . . . G 4 -50.271 -16.358 -11.122 1 38.13 ? O2 GOL 306 U 1 HETATM 5 C C3 GOL . . . G 4 -48.165 -17.146 -10.663 1 29.67 ? C3 GOL 306 U 1 HETATM 6 O O3 GOL . . . G 4 -48.14 -15.949 -11.494 1 29.56 ? O3 GOL 306 U 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #